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17 March 2024, 18:08:03 UTC
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Revision Author Date Message Commit Date
2fec438 Idan Gabdank 06 May 2016, 19:48:20 UTC fixed the erroneous audit trigger for missing read depth in unfiltered alignments files 06 May 2016, 19:48:20 UTC
a7cbaee Idan Gabdank 06 May 2016, 18:47:08 UTC audit message corrected 06 May 2016, 18:47:08 UTC
dcdbc9f Idan Gabdank 06 May 2016, 18:06:51 UTC fixed the exclusion of unfiltered alignments 06 May 2016, 18:06:51 UTC
5c3abd3 Idan Gabdank 06 May 2016, 17:51:17 UTC ignoring unfiltered alignments when checking for read depth 06 May 2016, 17:51:17 UTC
d3dc23a Idan Gabdank 06 May 2016, 17:48:57 UTC adding removed fastqs to out of date analysis 06 May 2016, 17:48:57 UTC
49bdfb0 Ben Hitz 06 May 2016, 04:24:15 UTC Merge pull request #1329 from ENCODE-DCC/3992-audit-cleanup 3992 audit cleanup 06 May 2016, 04:24:15 UTC
7256388 Ben Hitz 06 May 2016, 03:42:18 UTC Merge pull request #1328 from ENCODE-DCC/3452-out-of-date 3452 out of date 06 May 2016, 03:42:18 UTC
59a80c2 Ben Hitz 06 May 2016, 02:52:28 UTC Merge pull request #1318 from ENCODE-DCC/3890-matrix-header-links 3890: link matrix headers to search view 06 May 2016, 02:52:28 UTC
78ce236 Ben Hitz 06 May 2016, 02:51:02 UTC Merge pull request #1326 from ENCODE-DCC/4006-doc-arrow 4006 fix document disclosure arrows stuck in down position 06 May 2016, 02:51:02 UTC
315e681 Ben Hitz 06 May 2016, 02:50:28 UTC Merge pull request #1327 from ENCODE-DCC/4025-ihec-dbxrefs 4025 IHEC dbxrefs 06 May 2016, 02:50:28 UTC
ea21567 Idan Gabdank 06 May 2016, 01:11:09 UTC Merge branch 'master' into 3992-audit-cleanup 06 May 2016, 01:11:09 UTC
6aab0f6 Idan Gabdank 06 May 2016, 00:35:33 UTC Merge branch 'master' into 3452-out-of-date 06 May 2016, 00:35:33 UTC
7c24a2e Idan Gabdank 06 May 2016, 00:35:20 UTC Merge branch 'master' into 3452-out-of-date 06 May 2016, 00:35:20 UTC
52cb522 Ben Hitz 05 May 2016, 23:24:53 UTC Merge pull request #1325 from ENCODE-DCC/3745-revert-low-RNA 3745 revert low RNA 05 May 2016, 23:24:53 UTC
22057a3 Ben Hitz 05 May 2016, 22:39:34 UTC Merge pull request #1324 from ENCODE-DCC/3925-region-search-vis-tweaks default resolution setting on gene browser 05 May 2016, 22:39:34 UTC
6877970 Ben Hitz 05 May 2016, 22:38:56 UTC Merge pull request #1317 from ENCODE-DCC/4031-fix-report-download 4031: fix report TSV download for types with no explicit columns 05 May 2016, 22:38:56 UTC
f50f344 Ben Hitz 05 May 2016, 22:34:19 UTC Merge pull request #1319 from ENCODE-DCC/3891-stable-matrix-group-colors determine matrix group color in a stable way 05 May 2016, 22:34:19 UTC
312caf2 Idan Gabdank 05 May 2016, 21:28:15 UTC fixed the test of low spearman correlation audit 05 May 2016, 21:28:15 UTC
e5e2f9a Idan Gabdank 05 May 2016, 21:26:00 UTC modified spearman correlation audit made it ONLY low and WARNING removed the STD altogether 05 May 2016, 21:26:00 UTC
057b954 Forrest Tanaka 05 May 2016, 20:55:29 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4025-ihec-dbxrefs 05 May 2016, 20:55:29 UTC
e18288f Idan Gabdank 05 May 2016, 20:49:38 UTC Merge branch 'master' into 3745-revert-low-RNA 05 May 2016, 20:49:38 UTC
3279cfe Idan Gabdank 05 May 2016, 20:49:15 UTC Merge branch 'master' into 3992-audit-cleanup 05 May 2016, 20:49:15 UTC
1286a0d Idan Gabdank 05 May 2016, 20:46:38 UTC Merge branch 'master' into 3992-audit-cleanup 05 May 2016, 20:46:38 UTC
f6a7c13 Idan Gabdank 05 May 2016, 20:46:35 UTC included pooled biosamples in missing donor audit 05 May 2016, 20:46:35 UTC
2154c95 Forrest Tanaka 05 May 2016, 20:45:25 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4006-doc-arrow 05 May 2016, 20:45:25 UTC
8b57fbd Ben Hitz 05 May 2016, 20:44:13 UTC Merge pull request #1323 from ENCODE-DCC/3870-add-types 3870 add types 05 May 2016, 20:44:13 UTC
2a5396e Idan Gabdank 05 May 2016, 20:44:11 UTC modified bottlenecking audit collapsed mild and moderate into mild to moderate WARNING audit 05 May 2016, 20:44:11 UTC
4985798 Ben Hitz 05 May 2016, 20:43:49 UTC Merge pull request #1322 from ENCODE-DCC/3840-snp-lookup 3840 snp lookup 05 May 2016, 20:43:49 UTC
4e4bae5 Forrest Tanaka 05 May 2016, 20:41:14 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4006-doc-arrow 05 May 2016, 20:41:14 UTC
b4cb21c Ben Hitz 05 May 2016, 20:40:34 UTC Merge pull request #1316 from ENCODE-DCC/3797-qc-files 3797 Show shared QC object files 05 May 2016, 20:40:34 UTC
7dba534 Idan Gabdank 05 May 2016, 20:39:06 UTC Merge branch 'master' into 3992-audit-cleanup 05 May 2016, 20:39:06 UTC
6225296 Idan Gabdank 05 May 2016, 20:39:02 UTC modified broad read depth audit warning low 40-45M not compliant insufficient < 40M 05 May 2016, 20:39:02 UTC
722c38d Ben Hitz 05 May 2016, 20:38:41 UTC Merge pull request #1314 from ENCODE-DCC/4019-dataset-unreleased-files 4019 Use file searches for dataset types 05 May 2016, 20:38:41 UTC
d7865d0 Idan Gabdank 05 May 2016, 20:23:27 UTC missing raw data in replicate for submitted turned to be ERROR 05 May 2016, 20:23:27 UTC
2b9957b Idan Gabdank 05 May 2016, 20:23:03 UTC Merge branch 'master' into 3992-audit-cleanup 05 May 2016, 20:23:03 UTC
3088b15 Ben Hitz 05 May 2016, 20:11:15 UTC Merge pull request #1321 from ENCODE-DCC/3943-mgi 3943 Add MGI.D for mouse donor MGI 05 May 2016, 20:11:15 UTC
186d20d Ben Hitz 05 May 2016, 20:09:54 UTC Merge pull request #1320 from ENCODE-DCC/3938-donor-construct 3938 Combine biosample construct arrays 05 May 2016, 20:09:54 UTC
9033ac6 Idan Gabdank 05 May 2016, 18:16:23 UTC modified the gtex experiments design audit the audit will be triggered only in cases of gtex experiments with multiple donors and tissue types 05 May 2016, 18:16:23 UTC
7b43874 Ben Hitz 05 May 2016, 18:11:14 UTC Merge branch '3890-matrix-header-links' of https://github.com/ENCODE-DCC/encoded into 3890-matrix-header-links 05 May 2016, 18:11:14 UTC
51439a8 Idan Gabdank 05 May 2016, 17:38:31 UTC Added input and output types in analysis step Added : 1. open chromatin regions 2. filtered regions 3. filtered peaks 05 May 2016, 17:38:31 UTC
4ad414b Idan Gabdank 05 May 2016, 17:33:24 UTC added filtered peaks and regions to file schema 05 May 2016, 17:33:24 UTC
f4ef4b7 Idan Gabdank 05 May 2016, 17:24:16 UTC added bed5 to file_format_types 05 May 2016, 17:24:16 UTC
2a30015 Idan Gabdank 05 May 2016, 17:22:58 UTC added bed5 to checkfiles 05 May 2016, 17:22:58 UTC
5c11f33 Idan Gabdank 05 May 2016, 17:18:32 UTC removed the splitting of RNA-seq into low input 05 May 2016, 17:18:32 UTC
aed733a Forrest Tanaka 05 May 2016, 17:14:18 UTC Fixed wrong class for document arrows Also fixed a 1-pixel offset problem in the audit arrows. 05 May 2016, 17:14:18 UTC
0e49419 Forrest Tanaka 05 May 2016, 16:54:19 UTC Add IHEC: to dataset dbxrefs 05 May 2016, 16:54:19 UTC
2b4a1f8 Forrest Tanaka 05 May 2016, 16:47:42 UTC Revert "Add IHEC: dbxrefs to datasets" This reverts commit 828bfe1ab73c9434f426e86ab498720681738aee. 05 May 2016, 16:47:42 UTC
828bfe1 Forrest Tanaka 05 May 2016, 16:45:52 UTC Add IHEC: dbxrefs to datasets 05 May 2016, 16:45:52 UTC
598ebb7 Forrest Tanaka 05 May 2016, 16:26:40 UTC Revert "Add IHEC: dbxrefs to datasets" This reverts commit 5518c168181cc2ef65d9a40e265f0486d6241278. 05 May 2016, 16:26:40 UTC
5518c16 Forrest Tanaka 05 May 2016, 15:51:32 UTC Add IHEC: dbxrefs to datasets 05 May 2016, 15:51:32 UTC
18e67af David Glick 05 May 2016, 05:01:08 UTC determine matrix group color in a stable way 05 May 2016, 05:01:08 UTC
7f86731 David Glick 05 May 2016, 04:31:04 UTC link matrix headers to search view 05 May 2016, 04:31:04 UTC
b8f8134 David Glick 05 May 2016, 03:35:22 UTC fix report TSV download for types with no explicit columns 05 May 2016, 03:35:22 UTC
5c5f73c Ulugbek Baymuradov 05 May 2016, 00:59:37 UTC default resolution setting on gene browser 05 May 2016, 00:59:37 UTC
39e5448 Idan Gabdank 05 May 2016, 00:31:01 UTC correcting the tests reflect new standards for RNA seq read depth 05 May 2016, 00:31:01 UTC
efe4daf Idan Gabdank 05 May 2016, 00:20:39 UTC excluding squall from read_length audit 05 May 2016, 00:20:39 UTC
ce21514 Idan Gabdank 05 May 2016, 00:13:00 UTC modified the standard read depth of RNA-seq 05 May 2016, 00:13:00 UTC
2223f9c Idan Gabdank 05 May 2016, 00:04:43 UTC Merge branch 'master' into 3992-audit-cleanup 05 May 2016, 00:04:43 UTC
4a557f0 Idan Gabdank 05 May 2016, 00:04:41 UTC updated the audits 1. excluded single cell from replicate concordance 2. excluded CRISPR from mismatched controls read length 05 May 2016, 00:04:41 UTC
07ce05c Idan Gabdank 04 May 2016, 23:45:23 UTC limiting the out-of-date-analysis to encode uniform pipelines 04 May 2016, 23:45:23 UTC
812b844 Idan Gabdank 04 May 2016, 23:36:55 UTC Merge branch 'master' into 3452-out-of-date 04 May 2016, 23:36:55 UTC
d64d4e1 Forrest Tanaka 04 May 2016, 23:36:47 UTC Add MGI.D for mouse donor MGI 04 May 2016, 23:36:47 UTC
54a9757 Forrest Tanaka 04 May 2016, 22:38:42 UTC Combine biosample construct arrays Now concatenate biosample.construct and biosample.model_organism_donor_construct arrays to display them all together in the biosample summary panel. 04 May 2016, 22:38:42 UTC
50cf7ad Forrest Tanaka 04 May 2016, 15:35:47 UTC Now making qc label with @id Instead of using qc objects’ @type to make a label, we now break apart the @id. 04 May 2016, 15:35:47 UTC
15101a7 Forrest Tanaka 04 May 2016, 14:51:39 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3797-qc-files 04 May 2016, 14:51:39 UTC
ba32461 Idan Gabdank 03 May 2016, 22:21:14 UTC fixed indentation 03 May 2016, 22:21:14 UTC
12710d5 Ben Hitz 03 May 2016, 21:54:52 UTC Merge pull request #1313 from ENCODE-DCC/3975-construct-audit 3975 construct audit 03 May 2016, 21:54:52 UTC
7ee7f9b Ben Hitz 03 May 2016, 21:54:08 UTC Merge pull request #1312 from ENCODE-DCC/invariant-violation 3969 Matrix page Invariant violation fix 03 May 2016, 21:54:08 UTC
df96304 Idan Gabdank 03 May 2016, 21:30:08 UTC excluding unprocessed experiments from out-of-date analysis audit 03 May 2016, 21:30:08 UTC
db3357a Idan Gabdank 03 May 2016, 21:21:48 UTC making audits of control paire_with and inconsistent control replicates to be checked only for RAMPAGE and ChIP-seq 03 May 2016, 21:21:48 UTC
232b871 Idan Gabdank 03 May 2016, 20:36:13 UTC excluding shRNA from control read length audit 03 May 2016, 20:36:13 UTC
9f5b207 Idan Gabdank 03 May 2016, 19:41:27 UTC excluded 'proposed' and 'preliminary' from missing raw data audit 03 May 2016, 19:41:27 UTC
1a6b1d7 Idan Gabdank 03 May 2016, 19:32:11 UTC making all RNA Bind-n-Seq unreplicated 03 May 2016, 19:32:11 UTC
baddecf Forrest Tanaka 03 May 2016, 18:22:43 UTC Use file searches for dataset types Dataset-derived objects were using their own files array only for their file tables. Now they do file searches just like Experiments do. 03 May 2016, 18:22:43 UTC
a25fa24 Idan Gabdank 03 May 2016, 05:09:45 UTC fixed a bug attempting to grab an accession from GRCh38 reference 03 May 2016, 05:09:45 UTC
bbe3970 Idan Gabdank 03 May 2016, 00:24:49 UTC added an audit that flags any file derived from revoked files 03 May 2016, 00:24:49 UTC
10b5831 Idan Gabdank 03 May 2016, 00:13:30 UTC added tests for out of date analysis audit 03 May 2016, 00:13:30 UTC
47d84ac Idan Gabdank 03 May 2016, 00:01:40 UTC added tests for constructs in biosample audit 03 May 2016, 00:01:40 UTC
1c8cf3e Idan Gabdank 02 May 2016, 23:47:41 UTC indentation bug 02 May 2016, 23:47:41 UTC
c440f5f Idan Gabdank 02 May 2016, 23:45:09 UTC added an audit for catching organ fastqs that have not been processed 02 May 2016, 23:45:09 UTC
fba6c25 Forrest Tanaka 02 May 2016, 21:49:53 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into invariant-violation 02 May 2016, 21:49:53 UTC
057c3a2 Idan Gabdank 02 May 2016, 21:20:23 UTC fixed incorrect audit triggering in case of empty construct list in biosample 02 May 2016, 21:20:23 UTC
5cf344c Idan Gabdank 02 May 2016, 21:13:33 UTC Merge branch 'master' into 3975-construct-audit 02 May 2016, 21:13:33 UTC
814ed06 Ben Hitz 02 May 2016, 20:08:05 UTC Merge pull request #1311 from ENCODE-DCC/1533-search-by-submitted-file-name 1533 search by submitted file name 02 May 2016, 20:08:05 UTC
3a03a1b Ben Hitz 02 May 2016, 20:06:45 UTC Merge pull request #1308 from ENCODE-DCC/3960-file-assembly 3960 file assembly 02 May 2016, 20:06:45 UTC
73f8bdc Ben Hitz 02 May 2016, 16:14:47 UTC Merge pull request #1307 from ENCODE-DCC/3997-matrix-negative-filters 3997: fix matrix with != filters 02 May 2016, 16:14:47 UTC
71e8bcd Forrest Tanaka 02 May 2016, 16:00:41 UTC Change React returns to null Matrix code (but many others too!) return an empty string in conditional expressions when conditions aren’t met. Replacing these empty strings with "null" seems to eliminate the invariant violations. 02 May 2016, 16:00:41 UTC
b6d120e Forrest Tanaka 30 April 2016, 01:53:40 UTC Added missing React keys Still has the same problem, but key warning is gone. 30 April 2016, 01:53:40 UTC
23d0fe8 Ben Hitz 29 April 2016, 21:24:41 UTC Merge remote-tracking branch 'origin/3997-matrix-negative-filters' into 3997-matrix-negative-filters 29 April 2016, 21:24:41 UTC
228a067 Ben Hitz 29 April 2016, 03:32:30 UTC Merge pull request #1310 from ENCODE-DCC/doc-addendum add force re-index doc 29 April 2016, 03:32:30 UTC
8349dc1 Ben Hitz 29 April 2016, 03:31:44 UTC add force re-index doc 29 April 2016, 03:31:44 UTC
debebcc Ben Hitz 29 April 2016, 03:30:07 UTC Merge pull request #1309 from ENCODE-DCC/4005-align-buttons align buttons 29 April 2016, 03:30:07 UTC
ee3eebd Ben Hitz 29 April 2016, 03:29:45 UTC Merge pull request #1306 from ENCODE-DCC/3809-checkfiles-log 3809 checkfiles log 29 April 2016, 03:29:45 UTC
db91b47 David Glick 28 April 2016, 21:29:55 UTC reuse logic from set_filters for matrix filters 28 April 2016, 21:29:55 UTC
9f2e8ed Ulugbek Baymuradov 28 April 2016, 20:58:25 UTC align buttons 28 April 2016, 20:58:25 UTC
a93c1de Idan Gabdank 28 April 2016, 19:40:04 UTC added test for missing assembly without denied from files 28 April 2016, 19:40:04 UTC
c2c23aa Forrest Tanaka 28 April 2016, 19:32:33 UTC Lowercase qc type display 28 April 2016, 19:32:33 UTC
f9ecb69 Forrest Tanaka 28 April 2016, 19:22:43 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3797-qc-files 28 April 2016, 19:22:43 UTC
1644d46 Forrest Tanaka 28 April 2016, 19:22:37 UTC Updated styling 28 April 2016, 19:22:37 UTC
8af79d8 Idan Gabdank 28 April 2016, 18:59:12 UTC added an audit checking for missing or inconsistent assemblies 28 April 2016, 18:59:12 UTC
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