Skip to main content

Browse the archive

https://github.com/ENCODE-DCC/encoded
17 March 2024, 18:08:03 UTC
sort by:
Revision Author Date Message Commit Date
91e342d Laurence Rowe 30 January 2016, 05:13:35 UTC Don't try to be too clever with old antibody_approval objects. Avoid json-ld id clash with antibody_lot objects. Hide from non admin search results. 30 January 2016, 05:13:35 UTC
0a99bd4 Ben Hitz 27 January 2016, 21:07:12 UTC Merge pull request #1129 from ENCODE-DCC/pub-identifiers 3637 References with missing identifiers 27 January 2016, 21:07:12 UTC
8c2d243 Ben Hitz 27 January 2016, 21:06:48 UTC Merge pull request #1128 from ENCODE-DCC/3624-series-abstract-collection 3624 Add Series abstract collection to avoid errors editing child objects. 27 January 2016, 21:06:48 UTC
6dc3e09 Forrest Tanaka 27 January 2016, 19:01:37 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into pub-identifiers 27 January 2016, 19:01:37 UTC
5de5619 Ben Hitz 27 January 2016, 18:54:31 UTC Merge pull request #1127 from ENCODE-DCC/3622-dataset-facets 3622 Data Type facet to appear while logged in 27 January 2016, 18:54:31 UTC
fcb43f5 Ben Hitz 27 January 2016, 18:50:06 UTC Merge pull request #1126 from ENCODE-DCC/3586-3578-3594-fix 3586 3578 3594 3603 Thanks for clarification, this makes sense. 27 January 2016, 18:50:06 UTC
2273005 Ben Hitz 27 January 2016, 18:09:27 UTC Merge pull request #1125 from ENCODE-DCC/3636-tagalign 3636 tagalign 27 January 2016, 18:09:27 UTC
032a15a Ben Hitz 27 January 2016, 18:08:34 UTC Merge pull request #1123 from ENCODE-DCC/3547-fix Update experiment.json 27 January 2016, 18:08:34 UTC
6bf7da5 Ben Hitz 27 January 2016, 18:08:04 UTC Merge pull request #1122 from ENCODE-DCC/biosample-characterizations 3626 Make biosample characterization captions appear again 27 January 2016, 18:08:04 UTC
a156413 Ben Hitz 27 January 2016, 18:06:03 UTC Merge pull request #1121 from ENCODE-DCC/1506-app-version 1506 app version hey a bonus ticket! I will mod ticket or make new one for display 27 January 2016, 18:06:03 UTC
4f35394 Forrest Tanaka 27 January 2016, 04:50:03 UTC New datatype facet criteria Moved the determination of whether to hide the datatype facet out of the FacetLiset component into the Facet component. Changed the criteria to show the datatype facet if more than one datatype exists, and they all have different counts. 27 January 2016, 04:50:03 UTC
318c1c2 Forrest Tanaka 27 January 2016, 03:51:26 UTC Trying new hideTypes criteria Instead of hiding the datatype facet if there’s only one 'type' filter and more than one facet, this now hides it if we have a datatype facet with more than one term, and not all the terms’ doc_counts are the same. 27 January 2016, 03:51:26 UTC
478c75d Forrest Tanaka 27 January 2016, 03:08:09 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3622-dataset-facets 27 January 2016, 03:08:09 UTC
1a60a28 Forrest Tanaka 27 January 2016, 03:07:17 UTC In progress 27 January 2016, 03:07:17 UTC
c3b2b54 Idan Gabdank 27 January 2016, 01:07:51 UTC Merge branch 'master' into 3586-3578-3594-fix 27 January 2016, 01:07:51 UTC
0160ce8 Idan Gabdank 27 January 2016, 00:36:20 UTC fixed punctuation in the spearman audit message 27 January 2016, 00:36:20 UTC
9c44684 Forrest Tanaka 27 January 2016, 00:01:30 UTC Fix by using simple function Instead of using a React component, we use a simple function to render the reference links. That lets the calling code detect if a lack of identifiers makes for nothing to render. 27 January 2016, 00:01:30 UTC
b3d6f75 Ben Hitz 26 January 2016, 23:57:29 UTC Merge pull request #1124 from ENCODE-DCC/docs_addendum Docs addendum 26 January 2016, 23:57:29 UTC
fad42da Cricket Alicia Sloan 26 January 2016, 23:03:57 UTC Update check_files.py 26 January 2016, 23:03:57 UTC
9f8c098 Cricket Alicia Sloan 26 January 2016, 23:02:39 UTC Update check_files.py 26 January 2016, 23:02:39 UTC
e09c2dc Cricket Alicia Sloan 26 January 2016, 22:59:23 UTC Update file.json 26 January 2016, 22:59:23 UTC
14b3c4b Idan Gabdank 26 January 2016, 19:07:35 UTC added test for library complexity PBC2 Infinity 26 January 2016, 19:07:35 UTC
6823189 Idan Gabdank 26 January 2016, 18:47:43 UTC fixed the audit to accept PBC2 infinity 26 January 2016, 18:47:43 UTC
4ef71aa Idan Gabdank 26 January 2016, 18:32:47 UTC changed inappropriate into biosample term-type mismatch 26 January 2016, 18:32:47 UTC
a508b5f Idan Gabdank 26 January 2016, 18:28:14 UTC fixed the spearman to have only 2 significant digits 26 January 2016, 18:28:14 UTC
4d9a4ca Cricket Alicia Sloan 26 January 2016, 17:23:59 UTC Update experiment.json 26 January 2016, 17:23:59 UTC
b93b1ed Idan Gabdank 26 January 2016, 05:47:10 UTC updated the file audit tests to deal with low/insufficient instead of borderline 26 January 2016, 05:47:10 UTC
3c0bac8 Idan Gabdank 26 January 2016, 05:46:32 UTC Merge branch 'master' into 3586-3578-3594-fix 26 January 2016, 05:46:32 UTC
0c227c8 Laurence Rowe 26 January 2016, 03:14:55 UTC Add Series abstract collection to avoid errors editing child objects. 26 January 2016, 03:14:55 UTC
66e4ba9 Laurence Rowe 26 January 2016, 03:10:13 UTC Document permissions being used. 26 January 2016, 03:10:13 UTC
7fa668e Laurence Rowe 26 January 2016, 00:49:03 UTC Schemas etag based on app version and effective principals. 26 January 2016, 00:49:03 UTC
e44e9f7 Laurence Rowe 26 January 2016, 00:03:26 UTC Create an app version from git describe, adding in patch version from hash of git diff so it can be used as a stable etag. 26 January 2016, 00:26:04 UTC
d3bc62b Idan Gabdank 26 January 2016, 00:12:50 UTC removed duplicated code in biosample audit 26 January 2016, 00:12:50 UTC
2d6c596 Idan Gabdank 26 January 2016, 00:05:24 UTC fixed the inappropriate message in antibody characterization 26 January 2016, 00:05:24 UTC
7a4ca17 Idan Gabdank 25 January 2016, 23:51:29 UTC fixed duplicated message about NTR biosample from experiment audit 25 January 2016, 23:51:29 UTC
6009737 Idan Gabdank 25 January 2016, 23:41:50 UTC invalid changed to inappropriate in bisample audit 25 January 2016, 23:41:50 UTC
b09397a Idan Gabdank 25 January 2016, 23:22:42 UTC Merge branch 'master' into 3586-3578-3594-fix # Conflicts: # src/encoded/audit/antibody_characterization.py 25 January 2016, 23:22:42 UTC
a6f2ddf Idan Gabdank 25 January 2016, 23:21:37 UTC in biosample corrected the wording of inappropriate biosample_term_id 25 January 2016, 23:21:37 UTC
b9b064e Forrest Tanaka 25 January 2016, 23:05:31 UTC Update characterization test Was checking whether a document was a characterization using the @type, but the casing changed which made this test always fail. 25 January 2016, 23:05:31 UTC
9a9af56 Idan Gabdank 25 January 2016, 22:47:33 UTC Corrected the wording in low correlation audit to be consistent with low library complexity audit messages 25 January 2016, 22:47:33 UTC
8cb73ea Idan Gabdank 25 January 2016, 22:27:39 UTC corrected a typo in file_audit 25 January 2016, 22:27:39 UTC
91ea391 Idan Gabdank 25 January 2016, 22:25:12 UTC fixed the consistency check for biosample_term_id in part_of property removed the validity for any two biosamples sharing an organ - due to the fact that logically two different cell types would appear as valid as long as they share common organ - which is untrue Removed the test of these cases 25 January 2016, 22:25:12 UTC
93821a6 Ben Hitz 22 January 2016, 21:42:48 UTC Merge pull request #1120 from ENCODE-DCC/3588-lot-status Fix for #3588 lot reviews merging despite travis-ci build failures 22 January 2016, 21:42:48 UTC
a396cb6 Ben Hitz 22 January 2016, 21:42:25 UTC Merge pull request #1119 from ENCODE-DCC/3360-remove-raw-indexing-from-large-fields 3360 remove raw indexing from large fields Merging despite travis-ci failures 22 January 2016, 21:42:25 UTC
ec3a143 Ben Hitz 22 January 2016, 21:40:22 UTC Merge pull request #1117 from ENCODE-DCC/3618-step-run 3618 step run Merging despite travis-ci failure to build properly. 22 January 2016, 21:40:22 UTC
dcbcb3f Ben Hitz 22 January 2016, 18:11:47 UTC Merge pull request #1118 from ENCODE-DCC/3533-experiment-series 3533 Experiments link back to the Series dataset objects that refer to them 22 January 2016, 18:11:47 UTC
e997f63 Ben Hitz 22 January 2016, 18:08:34 UTC Merge pull request #1116 from ENCODE-DCC/3615-lambda Update file.json 22 January 2016, 18:08:34 UTC
a5aaba7 Ben Hitz 22 January 2016, 18:07:38 UTC Merge pull request #1115 from ENCODE-DCC/3547-internal-status 3547 internal status 22 January 2016, 18:07:38 UTC
a45427f Ben Hitz 22 January 2016, 17:49:27 UTC Merge pull request #1114 from ENCODE-DCC/3578-NTR-dedup 3578 NTR dedup Still working out that raise vs. yield, eh? Quite tricky. 22 January 2016, 17:49:27 UTC
b242bfb Laurence Rowe 22 January 2016, 02:12:19 UTC Scripts for reporting on blackhole objects. 22 January 2016, 02:14:05 UTC
2ebbe8c Forrest Tanaka 22 January 2016, 01:54:51 UTC Merge remote-tracking branch 'origin/master' into 3533-experiment-series # Conflicts: # src/encoded/static/components/experiment.js # src/encoded/static/scss/style.scss 22 January 2016, 01:55:10 UTC
e554966 Cricket Alicia Sloan 22 January 2016, 01:12:05 UTC Update file.json adding in the enums that Tim needs to post 22 January 2016, 01:12:05 UTC
8e51154 Cricket Alicia Sloan 22 January 2016, 01:08:19 UTC Update experiment.json removing trailing comma 22 January 2016, 01:08:19 UTC
d872486 Ben Hitz 22 January 2016, 00:34:02 UTC Merge pull request #1113 from ENCODE-DCC/3589-badges 3589 award.project badges on biosample/experiment pages 22 January 2016, 00:34:02 UTC
cfca6b8 Idan Gabdank 22 January 2016, 00:20:37 UTC corrected typo 22 January 2016, 00:20:37 UTC
32951dd Laurence Rowe 21 January 2016, 23:54:02 UTC Change upgrade step to not use rev link. 21 January 2016, 23:54:02 UTC
7856c4c Forrest Tanaka 21 January 2016, 23:01:24 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3533-experiment-series 21 January 2016, 23:01:24 UTC
7fc5891 Forrest Tanaka 21 January 2016, 23:01:15 UTC Filter released related datasets If we’re not logged in, filter out unreleased datasets from the related_series array. 21 January 2016, 23:01:15 UTC
099424e Laurence Rowe 21 January 2016, 22:52:52 UTC Avoid access_keys reverse link so editing access keys does not reindex content. 21 January 2016, 22:52:52 UTC
8254ba0 Idan Gabdank 21 January 2016, 22:50:01 UTC Merge branch 'master' into 3578-NTR-dedup 21 January 2016, 22:50:01 UTC
8155ad9 Idan Gabdank 21 January 2016, 22:49:58 UTC Merge branch 'master' into 3578-NTR-dedup # Conflicts: # src/encoded/tests/test_audit_experiment.py 21 January 2016, 22:49:58 UTC
bc8f353 Laurence Rowe 21 January 2016, 22:34:42 UTC Avoid using reverse links on this object as invalidating a virtual step_run can cause thousands of objects to be reindexed. 21 January 2016, 22:34:42 UTC
6f20dc5 Idan Gabdank 21 January 2016, 22:33:02 UTC fixed the wording of audit errors, and made the messages in experiment to appear only when it lacks replicates 21 January 2016, 22:33:02 UTC
90fceb0 Ben Hitz 21 January 2016, 22:23:47 UTC Merge pull request #1112 from ENCODE-DCC/3594-spearman 3594 spearman 21 January 2016, 22:23:47 UTC
3b1a19f Ben Hitz 21 January 2016, 22:22:29 UTC Merge pull request #1108 from ENCODE-DCC/3189-needs-pipeline 3189 needs pipeline all better now 21 January 2016, 22:22:29 UTC
8d4a873 Forrest Tanaka 21 January 2016, 19:48:16 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3589-badges 21 January 2016, 19:48:16 UTC
aa253eb Cricket Alicia Sloan 21 January 2016, 19:11:18 UTC Update experiment.json First draft 21 January 2016, 19:11:18 UTC
06bf480 Idan Gabdank 21 January 2016, 18:44:01 UTC Merge branch 'master' into 3578-NTR-dedup Moved the ontology prefix into biosample_term check in biosample modified the euro message to include biosample type 21 January 2016, 18:44:01 UTC
540004a Idan Gabdank 21 January 2016, 18:36:59 UTC Merge branch 'master' into 3189-needs-pipeline # Conflicts: # src/encoded/audit/experiment.py # src/encoded/tests/test_audit_file.py 21 January 2016, 18:36:59 UTC
fae4902 Forrest Tanaka 21 January 2016, 17:18:13 UTC React to touches Now reacts properly to touch-screen touches on tooltip taps. 21 January 2016, 17:18:13 UTC
2a894ea Idan Gabdank 21 January 2016, 17:03:19 UTC fixed the tests 21 January 2016, 17:03:19 UTC
b72a08a Forrest Tanaka 21 January 2016, 16:33:47 UTC Fix Chrome tooltip display bug An apparent bug in Chrome makes the tooltips appear far to the right of where they’re supposed to. It seems Chrome sometimes (for whatever reason) puts a multiplier on the “left” CSS attribute. It affects no other browsers. This change works around this bug. 21 January 2016, 16:33:47 UTC
f89f533 idan 21 January 2016, 07:57:52 UTC fixed the tests for insufficient spearman correlation 21 January 2016, 07:57:52 UTC
ea52b0d Forrest Tanaka 21 January 2016, 06:48:26 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3533-experiment-series 21 January 2016, 06:48:26 UTC
6ed7811 idan 21 January 2016, 06:23:48 UTC Merge branch 'master' into 3594-spearman 21 January 2016, 06:23:48 UTC
502f1f6 idan 21 January 2016, 06:23:45 UTC updated the error message in insufficient spearman correlation 21 January 2016, 06:23:45 UTC
d2e0e48 Ben Hitz 21 January 2016, 01:06:51 UTC Merge pull request #1111 from ENCODE-DCC/3587-captions 3587 antibody characterization captions 21 January 2016, 01:06:51 UTC
bdc7347 Ben Hitz 21 January 2016, 01:06:09 UTC Merge pull request #1110 from ENCODE-DCC/3597-audit-cleanup 3597 audit cleanup 21 January 2016, 01:06:09 UTC
bb3edc3 Ben Hitz 21 January 2016, 01:05:03 UTC Merge pull request #1109 from ENCODE-DCC/3603-500-on-posting-Infinity Allow PBC2 to be "Infinity" or float 21 January 2016, 01:05:03 UTC
360d849 Ben Hitz 21 January 2016, 01:03:51 UTC Merge pull request #1107 from ENCODE-DCC/3495-lib-complexity 3495 lib complexity 21 January 2016, 01:03:51 UTC
327e621 Ben Hitz 21 January 2016, 01:02:56 UTC Merge pull request #1106 from ENCODE-DCC/3585-gtex-experiments 3585 gtex experiments I don't understand why the GTEX-ness of a donor or parent is not encoded in the biosample/donor metadata. Why do we have lists? 21 January 2016, 01:02:56 UTC
8140175 Ben Hitz 21 January 2016, 00:59:38 UTC Merge pull request #1105 from ENCODE-DCC/3481-awards 3481 awards - crosschecked with 3573, still required. 21 January 2016, 00:59:38 UTC
29afeb1 Ben Hitz 21 January 2016, 00:54:27 UTC Merge pull request #1104 from ENCODE-DCC/3600-restricted Add restricted boolean to file 21 January 2016, 00:54:27 UTC
8213e37 Ben Hitz 21 January 2016, 00:54:05 UTC Merge pull request #1103 from ENCODE-DCC/3586-part-of-ontology 3586 part of ontology 21 January 2016, 00:54:05 UTC
4caeae8 Forrest Tanaka 21 January 2016, 00:49:02 UTC First implementation 21 January 2016, 00:49:02 UTC
bb6c6df Forrest Tanaka 20 January 2016, 22:50:50 UTC Correct a Jest test New antibody characterization display changed conditions. 20 January 2016, 22:50:50 UTC
4743b7d J. Seth Strattan 20 January 2016, 22:19:59 UTC Allow the string "Infinity" for float('inf') 20 January 2016, 22:19:59 UTC
d4e765a J. Seth Strattan 20 January 2016, 21:49:25 UTC Allow PBC2 to be a number 20 January 2016, 21:49:25 UTC
3141fdd Idan Gabdank 20 January 2016, 06:46:52 UTC Merge branch 'master' into 3495-lib-complexity 20 January 2016, 06:46:52 UTC
e23b93a Idan Gabdank 20 January 2016, 06:45:08 UTC Merge branch 'master' into 3585-gtex-experiments 20 January 2016, 06:45:08 UTC
63aa620 Idan Gabdank 20 January 2016, 06:38:39 UTC Merge branch 'master' into 3189-needs-pipeline 20 January 2016, 06:38:39 UTC
5cd92db Idan Gabdank 20 January 2016, 06:38:37 UTC fixed a bug detected needing chip-sea pipelines 1. typo was removed 2. target was erroneously looked for in file, so I moved it up to the experiment level Added tests for chip-sea 20 January 2016, 06:38:37 UTC
a6b5fb0 estherc 20 January 2016, 01:07:36 UTC Merge branch 'master' into 3481-awards 20 January 2016, 01:07:36 UTC
56bcddc Idan Gabdank 20 January 2016, 00:02:06 UTC excluded bind-n-sea from biosample audit in experiment 20 January 2016, 00:02:06 UTC
0eae286 Forrest Tanaka 19 January 2016, 23:34:54 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3587-captions 19 January 2016, 23:34:54 UTC
84f60cb Forrest Tanaka 19 January 2016, 23:34:42 UTC Fix missing caption Caused by the wrong conditional for displaying the caption in the drop-down section: instead of checking for the existence of the caption, I was testing for the existence of the calculated excerpt. Also fixed the caption/excerpt not appearing next to the preview icon. Also fixed the lack of padding in the drop-down area of antibody characterizations. 19 January 2016, 23:34:42 UTC
99f95cb Idan Gabdank 19 January 2016, 23:26:48 UTC removed CONTROLs from unreplicated experiments audit 19 January 2016, 23:26:48 UTC
38ccde5 Idan Gabdank 19 January 2016, 23:22:42 UTC missing flow cell details changed to be relevant only for modERN and GGR 19 January 2016, 23:22:42 UTC
0cf58e9 Idan Gabdank 19 January 2016, 23:14:31 UTC Merge branch 'master' into 3578-NTR-dedup 19 January 2016, 23:14:31 UTC
8727426 Idan Gabdank 19 January 2016, 23:14:28 UTC commented out the audit in case of biosample_ter_id issues in experiment, since it duplicates biosample audit messages 19 January 2016, 23:14:28 UTC
back to top