https://github.com/ENCODE-DCC/encoded
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Revision | Author | Date | Message | Commit Date |
---|---|---|---|---|
62d0fff | Ben Hitz | 08 March 2016, 18:24:50 UTC | remove slash from shRNA/RNA-seq, lower viz cut off to 100 experiments | 08 March 2016, 18:24:50 UTC |
68c8481 | Ben Hitz | 08 March 2016, 17:06:50 UTC | Merge pull request #1219 from ENCODE-DCC/ontology-part-of #3586 | 08 March 2016, 17:06:50 UTC |
dc925d6 | Ben Hitz | 08 March 2016, 17:06:05 UTC | Merge pull request #1218 from ENCODE-DCC/3765-fix added missing yield AuditFailure | 08 March 2016, 17:06:05 UTC |
63c4ae4 | Idan Gabdank | 07 March 2016, 20:19:38 UTC | Merge branch 'master' into ontology-part-of | 07 March 2016, 20:19:38 UTC |
92a9888 | Idan Gabdank | 07 March 2016, 20:19:09 UTC | updated the buildout to use new version of ontology json | 07 March 2016, 20:19:09 UTC |
efcf3e1 | Idan Gabdank | 07 March 2016, 20:14:51 UTC | removed "has_part" from the sets going into "terms[term]['data'] | 07 March 2016, 20:14:51 UTC |
4515f87 | Idan Gabdank | 07 March 2016, 19:51:04 UTC | introduced an error in the generate ontologies command - requiring from the user to put the most recent date of OBI ontology release | 07 March 2016, 19:51:04 UTC |
511b9c8 | Idan Gabdank | 07 March 2016, 19:45:23 UTC | added missing yield AuditFailure | 07 March 2016, 19:45:23 UTC |
2947ea9 | Ben Hitz | 06 March 2016, 19:42:45 UTC | Merge pull request #1217 from ENCODE-DCC/3793-fix-trackhubs Return null if not rendering file table | 06 March 2016, 19:42:45 UTC |
9efdb9a | Ben Hitz | 06 March 2016, 19:21:01 UTC | restore lost boostrap imports" | 06 March 2016, 19:21:01 UTC |
3086157 | Forrest Tanaka | 05 March 2016, 05:45:34 UTC | Return null if not rendering file table | 05 March 2016, 05:45:34 UTC |
082d0e0 | Ben Hitz | 05 March 2016, 03:12:27 UTC | add Make clean | 05 March 2016, 03:12:27 UTC |
754c197 | Ben Hitz | 05 March 2016, 02:28:18 UTC | attempt to merge with new filetables | 05 March 2016, 02:28:18 UTC |
4d774e6 | Ben Hitz | 05 March 2016, 02:03:42 UTC | Merge pull request #1215 from ENCODE-DCC/3330-file-tables 3330 file tables | 05 March 2016, 02:03:42 UTC |
92a3d4b | Ben Hitz | 05 March 2016, 02:03:17 UTC | Merge pull request #1213 from ENCODE-DCC/2479-expressive-search 2479 Support more expressive search queries. | 05 March 2016, 02:03:17 UTC |
1941bd7 | Ben Hitz | 05 March 2016, 00:51:19 UTC | Merge pull request #1214 from ENCODE-DCC/3743-donor-docs 3743 donor docs | 05 March 2016, 00:51:19 UTC |
5b41848 | Ben Hitz | 05 March 2016, 00:48:04 UTC | Merge pull request #1212 from ENCODE-DCC/3680-sort-assemblies 3680 sort assemblies | 05 March 2016, 00:48:04 UTC |
05c4185 | Ben Hitz | 05 March 2016, 00:30:09 UTC | fix batch hubs for hg38 | 05 March 2016, 00:30:09 UTC |
aec8a71 | Forrest Tanaka | 04 March 2016, 23:08:05 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3330-file-tables | 04 March 2016, 23:08:05 UTC |
6496f7b | Forrest Tanaka | 04 March 2016, 22:30:20 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-sort-assemblies | 04 March 2016, 22:30:20 UTC |
4d0ec66 | estherc | 04 March 2016, 21:49:16 UTC | Make fly and worm donors inherit donor embedded properties | 04 March 2016, 21:49:16 UTC |
a038c96 | Forrest Tanaka | 04 March 2016, 21:02:26 UTC | Fix batchHubLimit Error only seen with lots of experiments. Now defining batchHubLimit | 04 March 2016, 21:02:26 UTC |
04412ba | Forrest Tanaka | 04 March 2016, 19:54:24 UTC | Make dropdown styles consistent between widths Different browser widths were showing different style dropdown menus. | 04 March 2016, 19:54:24 UTC |
c382454 | Forrest Tanaka | 04 March 2016, 19:33:02 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3806-visualize-menu_3793 | 04 March 2016, 19:33:02 UTC |
9784e0f | Forrest Tanaka | 04 March 2016, 19:32:53 UTC | Make matrix Visualize button dropdown work The dropdown was getting hidden because it’s an absolutely positioned element, so it doesn’t push the wrapper element down to make room for it. This moves the Visualze button to its own div, and the height of that div is set with an inline style based on the height of the dropdown. | 04 March 2016, 19:32:53 UTC |
15cd51e | Ben Hitz | 04 March 2016, 19:15:29 UTC | Merge pull request #1211 from ENCODE-DCC/3690-type-facet-2 3690 type facet 2 | 04 March 2016, 19:15:29 UTC |
9deb345 | Ben Hitz | 04 March 2016, 19:15:03 UTC | Merge pull request #1210 from ENCODE-DCC/3546-award-facet 3546 award facet | 04 March 2016, 19:15:03 UTC |
d8e16db | Ben Hitz | 04 March 2016, 19:14:42 UTC | Merge pull request #1209 from ENCODE-DCC/3710-archived 3710 archived | 04 March 2016, 19:14:42 UTC |
28204e7 | Ben Hitz | 04 March 2016, 19:14:14 UTC | Merge pull request #1207 from ENCODE-DCC/3765-ref-epi 3765 ref epi | 04 March 2016, 19:14:14 UTC |
47de6f6 | estherc | 04 March 2016, 18:22:33 UTC | Add upgrade and upgrade test for donors | 04 March 2016, 18:22:33 UTC |
69a82b5 | estherc | 04 March 2016, 18:22:15 UTC | Increment schema version in donors | 04 March 2016, 18:22:15 UTC |
71e8f18 | Ben Hitz | 04 March 2016, 18:18:36 UTC | Merge pull request #1208 from ENCODE-DCC/goofys-wrapper Use a wrapper script for goofys to set ulimit -n. | 04 March 2016, 18:18:36 UTC |
eca2d1c | estherc | 04 March 2016, 17:25:38 UTC | Merge branch 'master' into 3546-award-facet | 04 March 2016, 17:25:38 UTC |
ea7c53d | Forrest Tanaka | 04 March 2016, 16:12:08 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3690-type-facet-2 | 04 March 2016, 16:12:08 UTC |
40ba4d0 | Cricket Alicia Sloan | 04 March 2016, 15:09:32 UTC | Update dataset.json I am reorganizing this list for future plans. We are moving away from using release ready verified and preliminary, so they are at the bottom. The others are in the order that they should should flow. | 04 March 2016, 15:09:32 UTC |
38c4b8f | Forrest Tanaka | 04 March 2016, 08:02:15 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-sort-assemblies | 04 March 2016, 08:02:15 UTC |
884ac1e | Forrest Tanaka | 04 March 2016, 08:02:04 UTC | Set default filter for graphs | 04 March 2016, 08:02:04 UTC |
808d9e6 | Ben Hitz | 04 March 2016, 06:59:14 UTC | Merge pull request #1204 from ENCODE-DCC/ontology-part-of Ontology part of | 04 March 2016, 06:59:14 UTC |
25341fb | Ben Hitz | 04 March 2016, 04:41:14 UTC | Merge pull request #1206 from ENCODE-DCC/3720-generic-qc-metric 3720 generic qc metric | 04 March 2016, 04:41:14 UTC |
3c9a47a | Laurence Rowe | 04 March 2016, 03:26:58 UTC | Use a wrapper script for goofys to set ulimit -n. | 04 March 2016, 03:26:58 UTC |
2d8370b | Ben Hitz | 04 March 2016, 03:03:20 UTC | Merge remote-tracking branch 'origin' into 3793-fix-trackhubs | 04 March 2016, 03:03:20 UTC |
95739a6 | Forrest Tanaka | 04 March 2016, 01:06:24 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-sort-assemblies | 04 March 2016, 01:06:24 UTC |
1b14056 | Forrest Tanaka | 04 March 2016, 01:06:12 UTC | In progress | 04 March 2016, 01:06:12 UTC |
fb53d97 | Forrest Tanaka | 04 March 2016, 00:51:39 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3690-type-facet-2 | 04 March 2016, 00:51:39 UTC |
0272f43 | Forrest Tanaka | 04 March 2016, 00:51:31 UTC | Discount audit facets for data type facet display | 04 March 2016, 00:51:31 UTC |
cd8ae6e | Ben Hitz | 04 March 2016, 00:30:16 UTC | Merge pull request #1205 from ENCODE-DCC/3623-mad-score 3623 mad score | 04 March 2016, 00:30:16 UTC |
be2bcc6 | Ben Hitz | 04 March 2016, 00:06:15 UTC | refactor | 04 March 2016, 00:06:15 UTC |
5156b66 | Ben Hitz | 03 March 2016, 23:23:54 UTC | fix GRCh38, dataset buttons | 03 March 2016, 23:23:54 UTC |
394e712 | Cricket Alicia Sloan | 03 March 2016, 23:08:37 UTC | Update dataset.json | 03 March 2016, 23:08:37 UTC |
a180c1e | Cricket Alicia Sloan | 03 March 2016, 23:07:33 UTC | Update file.json | 03 March 2016, 23:07:33 UTC |
59fe45b | Ben Hitz | 03 March 2016, 22:58:28 UTC | Merge branch 'master' into 3671-save-trackhubs-2 | 03 March 2016, 22:58:28 UTC |
71f0f90 | Idan Gabdank | 03 March 2016, 22:17:59 UTC | fixed typo | 03 March 2016, 22:17:59 UTC |
6bb4eef | Idan Gabdank | 03 March 2016, 21:53:57 UTC | Merge branch 'master' into 3720-generic-qc-metric | 03 March 2016, 21:53:57 UTC |
f57d811 | Idan Gabdank | 03 March 2016, 21:53:54 UTC | Added additional attachments enums | 03 March 2016, 21:53:54 UTC |
75ac2ce | estherc | 03 March 2016, 20:00:26 UTC | Merge branch 'master' into 3743-donor-docs | 03 March 2016, 20:00:26 UTC |
d53f07b | Idan Gabdank | 03 March 2016, 19:57:42 UTC | Merge remote-tracking branch 'origin/3623-mad-score' into 3623-mad-score resolved the conflict | 03 March 2016, 19:57:42 UTC |
73963ad | Idan Gabdank | 03 March 2016, 19:54:54 UTC | Merge remote-tracking branch 'origin/3623-mad-score' into 3623-mad-score # Conflicts: # src/encoded/tests/test_audit_file.py | 03 March 2016, 19:54:54 UTC |
0f6f30e | Idan Gabdank | 03 March 2016, 19:38:32 UTC | modified the audit to follow IHEC requirements | 03 March 2016, 19:38:32 UTC |
5dfd8f8 | Idan Gabdank | 03 March 2016, 19:32:17 UTC | Merge branch 'master' into 3765-ref-epi | 03 March 2016, 19:32:17 UTC |
3643604 | Idan Gabdank | 03 March 2016, 19:30:13 UTC | Merge branch 'master' into ontology-part-of | 03 March 2016, 19:30:13 UTC |
5f72cc0 | Ben Hitz | 03 March 2016, 19:24:59 UTC | Merge pull request #1195 from ENCODE-DCC/3739-matrix-facet-improvements Matrix facet improvements -- see http://redmine.encodedcc.org/issues/3739 | 03 March 2016, 19:24:59 UTC |
5588648 | Ben Hitz | 03 March 2016, 19:24:39 UTC | Merge pull request #1203 from ENCODE-DCC/3774-audit-resort 3774 audit resort | 03 March 2016, 19:24:39 UTC |
e8cf3d8 | Laurence Rowe | 03 March 2016, 19:10:43 UTC | 2479 Support more expressive search queries. | 03 March 2016, 19:10:43 UTC |
bd31027 | Forrest Tanaka | 03 March 2016, 19:01:12 UTC | Drop Library column from processed files | 03 March 2016, 19:01:12 UTC |
f18fb1d | Forrest Tanaka | 03 March 2016, 18:47:20 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3330-file-tables | 03 March 2016, 18:47:20 UTC |
5a11ea6 | Idan Gabdank | 03 March 2016, 18:15:06 UTC | Merge branch 'master' into 3765-ref-epi | 03 March 2016, 18:15:06 UTC |
3dd9f9c | Forrest Tanaka | 03 March 2016, 18:01:54 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-sort-assemblies | 03 March 2016, 18:01:54 UTC |
3cab31f | Forrest Tanaka | 03 March 2016, 18:01:47 UTC | Sort assembly/annotation menu for graph | 03 March 2016, 18:01:47 UTC |
7a972a8 | Idan Gabdank | 03 March 2016, 17:56:32 UTC | Merge branch 'master' into 3623-mad-score # Conflicts: # src/encoded/tests/test_audit_file.py | 03 March 2016, 17:56:32 UTC |
66fe5c8 | Idan Gabdank | 03 March 2016, 17:54:56 UTC | Merge branch 'master' into 3774-audit-resort | 03 March 2016, 17:54:56 UTC |
4974345 | Ben Hitz | 03 March 2016, 17:15:14 UTC | Merge pull request #1193 from ENCODE-DCC/check-files-aws 3112 Check files aws | 03 March 2016, 17:15:14 UTC |
173b8ce | Idan Gabdank | 03 March 2016, 06:15:54 UTC | Merge branch 'master' into ontology-part-of | 03 March 2016, 06:15:54 UTC |
2c86271 | Idan Gabdank | 03 March 2016, 06:10:20 UTC | removed conflicting mixin/attachment from the properties of generic_quality_metric | 03 March 2016, 06:10:20 UTC |
e54df5f | Idan Gabdank | 03 March 2016, 01:27:08 UTC | added generic QC metric to quality_metric collections | 03 March 2016, 01:27:08 UTC |
897a0e1 | David Glick | 01 March 2016, 05:28:21 UTC | Matrix facet improvements -- see http://redmine.encodedcc.org/issues/3739 * Better formatting when there are 0 results * Show filters that aren't in the facet list, like we do for standard search * Include audit facets for users with search_audit permission | 03 March 2016, 01:15:22 UTC |
ed5a8c1 | Ben Hitz | 03 March 2016, 01:12:11 UTC | Merge pull request #1201 from ENCODE-DCC/3592-control-depth 3592 control depth | 03 March 2016, 01:12:11 UTC |
c89d45f | Ben Hitz | 03 March 2016, 01:11:35 UTC | Merge pull request #1200 from ENCODE-DCC/3570-biosample-summary 3570 biosample summary | 03 March 2016, 01:11:35 UTC |
64731bf | Ben Hitz | 03 March 2016, 01:09:59 UTC | Merge pull request #1199 from ENCODE-DCC/3788-mgi 3788 MGI linkouts | 03 March 2016, 01:09:59 UTC |
cec8f77 | Ben Hitz | 03 March 2016, 01:06:41 UTC | Merge pull request #1198 from ENCODE-DCC/3690-type-facet 3690 type facet | 03 March 2016, 01:06:41 UTC |
11a3d96 | Idan Gabdank | 03 March 2016, 01:00:28 UTC | Merge branch 'master' into 3720-generic-qc-metric | 03 March 2016, 01:00:28 UTC |
673aca5 | Idan Gabdank | 03 March 2016, 01:00:05 UTC | added generic qc metric object to schemas | 03 March 2016, 01:00:05 UTC |
0e2cc85 | Idan Gabdank | 03 March 2016, 00:37:56 UTC | fixed audit script error that happened in cases biosamples were not given biosample_term_name | 03 March 2016, 00:37:56 UTC |
3762d47 | Ben Hitz | 03 March 2016, 00:28:21 UTC | Merge pull request #1202 from ENCODE-DCC/revert-1196-3563-boto3 Revert "3563 boto3" | 03 March 2016, 00:28:21 UTC |
08f5e67 | Ben Hitz | 03 March 2016, 00:27:08 UTC | Revert "3563 boto3" | 03 March 2016, 00:27:08 UTC |
44b833e | Idan Gabdank | 02 March 2016, 23:57:33 UTC | Merge branch 'master' into ontology-part-of | 02 March 2016, 23:57:33 UTC |
06b5bc2 | Idan Gabdank | 02 March 2016, 23:57:31 UTC | changed audit level to DCC_ACTION for inconsistent part_of term id | 02 March 2016, 23:57:31 UTC |
8887a31 | Ben Hitz | 02 March 2016, 23:15:45 UTC | Merge pull request #1196 from ENCODE-DCC/3563-boto3 3563 boto3 | 02 March 2016, 23:15:45 UTC |
962915a | Idan Gabdank | 02 March 2016, 22:27:41 UTC | corrected the audit wording | 02 March 2016, 22:27:41 UTC |
c55011c | Idan Gabdank | 02 March 2016, 22:21:13 UTC | Merge branch 'master' into ontology-part-of | 02 March 2016, 22:21:13 UTC |
2e974a4 | Idan Gabdank | 02 March 2016, 22:16:43 UTC | Merge branch 'master' into 3592-control-depth # Conflicts: # src/encoded/audit/file.py | 02 March 2016, 22:16:43 UTC |
ecef3ff | Laurence Rowe | 02 March 2016, 21:49:52 UTC | Increase file descriptor limit for goofys. Ideally this would apply to a goofys specific user, but as it is configured in fstab it runs as root. | 02 March 2016, 21:49:52 UTC |
60b7bbf | Idan Gabdank | 02 March 2016, 21:13:19 UTC | fixed test of audit with proper error level | 02 March 2016, 21:13:19 UTC |
af1bf05 | Forrest Tanaka | 02 March 2016, 20:56:22 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3570-biosample-summary | 02 March 2016, 20:56:22 UTC |
0dd8c71 | Idan Gabdank | 02 March 2016, 20:47:17 UTC | Merge branch 'master' into 3765-ref-epi | 02 March 2016, 20:47:17 UTC |
d291098 | Idan Gabdank | 02 March 2016, 20:47:16 UTC | fixed WGBS problem ,the Massa term name was incorrect | 02 March 2016, 20:47:16 UTC |
40dffc9 | Idan Gabdank | 02 March 2016, 18:31:11 UTC | Merge branch 'master' into 3774-audit-resort | 02 March 2016, 18:31:11 UTC |
8f0cff9 | Idan Gabdank | 02 March 2016, 18:30:37 UTC | added tests for multiple donors and biosample term names to reference epigenomes | 02 March 2016, 18:30:37 UTC |
b6a65c5 | Forrest Tanaka | 02 March 2016, 17:37:40 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3788-mgi | 02 March 2016, 17:37:40 UTC |
8ebf703 | Forrest Tanaka | 02 March 2016, 16:15:29 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3690-type-facet | 02 March 2016, 16:15:29 UTC |
29050b4 | Idan Gabdank | 02 March 2016, 06:58:34 UTC | dataset audits modifications 1. extracted publication_data from dataset audit 2. added reference_epigenome audit 3. added tests to reference_epigenome audit | 02 March 2016, 06:58:34 UTC |