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17 March 2024, 18:08:03 UTC
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3338f83 Forrest Tanaka 08 March 2016, 20:34:24 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3815-report-bg 08 March 2016, 20:34:24 UTC
0ee94fb Ben Hitz 08 March 2016, 20:22:57 UTC Merge pull request #1222 from ENCODE-DCC/3810-internal_status Update experiment.json 08 March 2016, 20:22:57 UTC
4004dba Forrest Tanaka 08 March 2016, 19:24:09 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3815-report-bg 08 March 2016, 19:24:09 UTC
5df44b1 Forrest Tanaka 08 March 2016, 19:09:16 UTC Adjust table styles To fix the checkerboard patterns on the report view. 08 March 2016, 19:09:16 UTC
5285360 Ben Hitz 08 March 2016, 19:07:30 UTC Merge pull request #1221 from ENCODE-DCC/3680-filter-sorting_3330 3680 Graph Filter Sorting 08 March 2016, 19:07:30 UTC
943fa3f Cricket Alicia Sloan 08 March 2016, 18:25:43 UTC Update experiment.json restrict permissions 08 March 2016, 18:25:43 UTC
1761e40 Forrest Tanaka 08 March 2016, 17:45:08 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-filter-sorting_3330 08 March 2016, 17:45:08 UTC
68c8481 Ben Hitz 08 March 2016, 17:06:50 UTC Merge pull request #1219 from ENCODE-DCC/ontology-part-of #3586 08 March 2016, 17:06:50 UTC
dc925d6 Ben Hitz 08 March 2016, 17:06:05 UTC Merge pull request #1218 from ENCODE-DCC/3765-fix added missing yield AuditFailure 08 March 2016, 17:06:05 UTC
be0401c Forrest Tanaka 08 March 2016, 00:10:02 UTC Merge branch 'ontology-part-of' into 3680-filter-sorting_3330 08 March 2016, 00:10:02 UTC
63c4ae4 Idan Gabdank 07 March 2016, 20:19:38 UTC Merge branch 'master' into ontology-part-of 07 March 2016, 20:19:38 UTC
92a9888 Idan Gabdank 07 March 2016, 20:19:09 UTC updated the buildout to use new version of ontology json 07 March 2016, 20:19:09 UTC
efcf3e1 Idan Gabdank 07 March 2016, 20:14:51 UTC removed "has_part" from the sets going into "terms[term]['data'] 07 March 2016, 20:14:51 UTC
0da5a6f Forrest Tanaka 07 March 2016, 20:13:16 UTC Just to trigger different SHAR 07 March 2016, 20:13:16 UTC
ac5100c Forrest Tanaka 07 March 2016, 20:07:03 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-filter-sorting_3330 07 March 2016, 20:07:03 UTC
943d83e Forrest Tanaka 07 March 2016, 20:06:48 UTC Change filter menu sorting Now use assembly as a secondary key 07 March 2016, 20:06:48 UTC
4515f87 Idan Gabdank 07 March 2016, 19:51:04 UTC introduced an error in the generate ontologies command - requiring from the user to put the most recent date of OBI ontology release 07 March 2016, 19:51:04 UTC
511b9c8 Idan Gabdank 07 March 2016, 19:45:23 UTC added missing yield AuditFailure 07 March 2016, 19:45:23 UTC
9ab452b Forrest Tanaka 07 March 2016, 19:03:12 UTC Series still displayed files the old way Update to the way all other dataset types display files. Also fix a React key warning. 07 March 2016, 19:03:12 UTC
8b26222 Forrest Tanaka 07 March 2016, 18:19:23 UTC Display dataset from files array Instead of relying on search to get released and unreleased files, go back to searching only for unreleased files, and getting files from dataset.files. This way worked for experiments, but not some dataset types. Also fix a problem with the graph filtering menu causing a JS error if undefined. 07 March 2016, 18:19:23 UTC
2947ea9 Ben Hitz 06 March 2016, 19:42:45 UTC Merge pull request #1217 from ENCODE-DCC/3793-fix-trackhubs Return null if not rendering file table 06 March 2016, 19:42:45 UTC
9efdb9a Ben Hitz 06 March 2016, 19:21:01 UTC restore lost boostrap imports" 06 March 2016, 19:21:01 UTC
3086157 Forrest Tanaka 05 March 2016, 05:45:34 UTC Return null if not rendering file table 05 March 2016, 05:45:34 UTC
082d0e0 Ben Hitz 05 March 2016, 03:12:27 UTC add Make clean 05 March 2016, 03:12:27 UTC
754c197 Ben Hitz 05 March 2016, 02:28:18 UTC attempt to merge with new filetables 05 March 2016, 02:28:18 UTC
4d774e6 Ben Hitz 05 March 2016, 02:03:42 UTC Merge pull request #1215 from ENCODE-DCC/3330-file-tables 3330 file tables 05 March 2016, 02:03:42 UTC
92a3d4b Ben Hitz 05 March 2016, 02:03:17 UTC Merge pull request #1213 from ENCODE-DCC/2479-expressive-search 2479 Support more expressive search queries. 05 March 2016, 02:03:17 UTC
1941bd7 Ben Hitz 05 March 2016, 00:51:19 UTC Merge pull request #1214 from ENCODE-DCC/3743-donor-docs 3743 donor docs 05 March 2016, 00:51:19 UTC
5b41848 Ben Hitz 05 March 2016, 00:48:04 UTC Merge pull request #1212 from ENCODE-DCC/3680-sort-assemblies 3680 sort assemblies 05 March 2016, 00:48:04 UTC
05c4185 Ben Hitz 05 March 2016, 00:30:09 UTC fix batch hubs for hg38 05 March 2016, 00:30:09 UTC
aec8a71 Forrest Tanaka 04 March 2016, 23:08:05 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3330-file-tables 04 March 2016, 23:08:05 UTC
6496f7b Forrest Tanaka 04 March 2016, 22:30:20 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-sort-assemblies 04 March 2016, 22:30:20 UTC
4d0ec66 estherc 04 March 2016, 21:49:16 UTC Make fly and worm donors inherit donor embedded properties 04 March 2016, 21:49:16 UTC
a038c96 Forrest Tanaka 04 March 2016, 21:02:26 UTC Fix batchHubLimit Error only seen with lots of experiments. Now defining batchHubLimit 04 March 2016, 21:02:26 UTC
04412ba Forrest Tanaka 04 March 2016, 19:54:24 UTC Make dropdown styles consistent between widths Different browser widths were showing different style dropdown menus. 04 March 2016, 19:54:24 UTC
c382454 Forrest Tanaka 04 March 2016, 19:33:02 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3806-visualize-menu_3793 04 March 2016, 19:33:02 UTC
9784e0f Forrest Tanaka 04 March 2016, 19:32:53 UTC Make matrix Visualize button dropdown work The dropdown was getting hidden because it’s an absolutely positioned element, so it doesn’t push the wrapper element down to make room for it. This moves the Visualze button to its own div, and the height of that div is set with an inline style based on the height of the dropdown. 04 March 2016, 19:32:53 UTC
15cd51e Ben Hitz 04 March 2016, 19:15:29 UTC Merge pull request #1211 from ENCODE-DCC/3690-type-facet-2 3690 type facet 2 04 March 2016, 19:15:29 UTC
9deb345 Ben Hitz 04 March 2016, 19:15:03 UTC Merge pull request #1210 from ENCODE-DCC/3546-award-facet 3546 award facet 04 March 2016, 19:15:03 UTC
d8e16db Ben Hitz 04 March 2016, 19:14:42 UTC Merge pull request #1209 from ENCODE-DCC/3710-archived 3710 archived 04 March 2016, 19:14:42 UTC
28204e7 Ben Hitz 04 March 2016, 19:14:14 UTC Merge pull request #1207 from ENCODE-DCC/3765-ref-epi 3765 ref epi 04 March 2016, 19:14:14 UTC
47de6f6 estherc 04 March 2016, 18:22:33 UTC Add upgrade and upgrade test for donors 04 March 2016, 18:22:33 UTC
69a82b5 estherc 04 March 2016, 18:22:15 UTC Increment schema version in donors 04 March 2016, 18:22:15 UTC
71e8f18 Ben Hitz 04 March 2016, 18:18:36 UTC Merge pull request #1208 from ENCODE-DCC/goofys-wrapper Use a wrapper script for goofys to set ulimit -n. 04 March 2016, 18:18:36 UTC
eca2d1c estherc 04 March 2016, 17:25:38 UTC Merge branch 'master' into 3546-award-facet 04 March 2016, 17:25:38 UTC
ea7c53d Forrest Tanaka 04 March 2016, 16:12:08 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3690-type-facet-2 04 March 2016, 16:12:08 UTC
40ba4d0 Cricket Alicia Sloan 04 March 2016, 15:09:32 UTC Update dataset.json I am reorganizing this list for future plans. We are moving away from using release ready verified and preliminary, so they are at the bottom. The others are in the order that they should should flow. 04 March 2016, 15:09:32 UTC
38c4b8f Forrest Tanaka 04 March 2016, 08:02:15 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-sort-assemblies 04 March 2016, 08:02:15 UTC
884ac1e Forrest Tanaka 04 March 2016, 08:02:04 UTC Set default filter for graphs 04 March 2016, 08:02:04 UTC
808d9e6 Ben Hitz 04 March 2016, 06:59:14 UTC Merge pull request #1204 from ENCODE-DCC/ontology-part-of Ontology part of 04 March 2016, 06:59:14 UTC
25341fb Ben Hitz 04 March 2016, 04:41:14 UTC Merge pull request #1206 from ENCODE-DCC/3720-generic-qc-metric 3720 generic qc metric 04 March 2016, 04:41:14 UTC
3c9a47a Laurence Rowe 04 March 2016, 03:26:58 UTC Use a wrapper script for goofys to set ulimit -n. 04 March 2016, 03:26:58 UTC
2d8370b Ben Hitz 04 March 2016, 03:03:20 UTC Merge remote-tracking branch 'origin' into 3793-fix-trackhubs 04 March 2016, 03:03:20 UTC
95739a6 Forrest Tanaka 04 March 2016, 01:06:24 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-sort-assemblies 04 March 2016, 01:06:24 UTC
1b14056 Forrest Tanaka 04 March 2016, 01:06:12 UTC In progress 04 March 2016, 01:06:12 UTC
fb53d97 Forrest Tanaka 04 March 2016, 00:51:39 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3690-type-facet-2 04 March 2016, 00:51:39 UTC
0272f43 Forrest Tanaka 04 March 2016, 00:51:31 UTC Discount audit facets for data type facet display 04 March 2016, 00:51:31 UTC
cd8ae6e Ben Hitz 04 March 2016, 00:30:16 UTC Merge pull request #1205 from ENCODE-DCC/3623-mad-score 3623 mad score 04 March 2016, 00:30:16 UTC
be2bcc6 Ben Hitz 04 March 2016, 00:06:15 UTC refactor 04 March 2016, 00:06:15 UTC
5156b66 Ben Hitz 03 March 2016, 23:23:54 UTC fix GRCh38, dataset buttons 03 March 2016, 23:23:54 UTC
394e712 Cricket Alicia Sloan 03 March 2016, 23:08:37 UTC Update dataset.json 03 March 2016, 23:08:37 UTC
a180c1e Cricket Alicia Sloan 03 March 2016, 23:07:33 UTC Update file.json 03 March 2016, 23:07:33 UTC
59fe45b Ben Hitz 03 March 2016, 22:58:28 UTC Merge branch 'master' into 3671-save-trackhubs-2 03 March 2016, 22:58:28 UTC
71f0f90 Idan Gabdank 03 March 2016, 22:17:59 UTC fixed typo 03 March 2016, 22:17:59 UTC
6bb4eef Idan Gabdank 03 March 2016, 21:53:57 UTC Merge branch 'master' into 3720-generic-qc-metric 03 March 2016, 21:53:57 UTC
f57d811 Idan Gabdank 03 March 2016, 21:53:54 UTC Added additional attachments enums 03 March 2016, 21:53:54 UTC
75ac2ce estherc 03 March 2016, 20:00:26 UTC Merge branch 'master' into 3743-donor-docs 03 March 2016, 20:00:26 UTC
d53f07b Idan Gabdank 03 March 2016, 19:57:42 UTC Merge remote-tracking branch 'origin/3623-mad-score' into 3623-mad-score resolved the conflict 03 March 2016, 19:57:42 UTC
73963ad Idan Gabdank 03 March 2016, 19:54:54 UTC Merge remote-tracking branch 'origin/3623-mad-score' into 3623-mad-score # Conflicts: # src/encoded/tests/test_audit_file.py 03 March 2016, 19:54:54 UTC
0f6f30e Idan Gabdank 03 March 2016, 19:38:32 UTC modified the audit to follow IHEC requirements 03 March 2016, 19:38:32 UTC
5dfd8f8 Idan Gabdank 03 March 2016, 19:32:17 UTC Merge branch 'master' into 3765-ref-epi 03 March 2016, 19:32:17 UTC
3643604 Idan Gabdank 03 March 2016, 19:30:13 UTC Merge branch 'master' into ontology-part-of 03 March 2016, 19:30:13 UTC
5f72cc0 Ben Hitz 03 March 2016, 19:24:59 UTC Merge pull request #1195 from ENCODE-DCC/3739-matrix-facet-improvements Matrix facet improvements -- see http://redmine.encodedcc.org/issues/3739 03 March 2016, 19:24:59 UTC
5588648 Ben Hitz 03 March 2016, 19:24:39 UTC Merge pull request #1203 from ENCODE-DCC/3774-audit-resort 3774 audit resort 03 March 2016, 19:24:39 UTC
e8cf3d8 Laurence Rowe 03 March 2016, 19:10:43 UTC 2479 Support more expressive search queries. 03 March 2016, 19:10:43 UTC
bd31027 Forrest Tanaka 03 March 2016, 19:01:12 UTC Drop Library column from processed files 03 March 2016, 19:01:12 UTC
f18fb1d Forrest Tanaka 03 March 2016, 18:47:20 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3330-file-tables 03 March 2016, 18:47:20 UTC
5a11ea6 Idan Gabdank 03 March 2016, 18:15:06 UTC Merge branch 'master' into 3765-ref-epi 03 March 2016, 18:15:06 UTC
3dd9f9c Forrest Tanaka 03 March 2016, 18:01:54 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3680-sort-assemblies 03 March 2016, 18:01:54 UTC
3cab31f Forrest Tanaka 03 March 2016, 18:01:47 UTC Sort assembly/annotation menu for graph 03 March 2016, 18:01:47 UTC
7a972a8 Idan Gabdank 03 March 2016, 17:56:32 UTC Merge branch 'master' into 3623-mad-score # Conflicts: # src/encoded/tests/test_audit_file.py 03 March 2016, 17:56:32 UTC
66fe5c8 Idan Gabdank 03 March 2016, 17:54:56 UTC Merge branch 'master' into 3774-audit-resort 03 March 2016, 17:54:56 UTC
4974345 Ben Hitz 03 March 2016, 17:15:14 UTC Merge pull request #1193 from ENCODE-DCC/check-files-aws 3112 Check files aws 03 March 2016, 17:15:14 UTC
173b8ce Idan Gabdank 03 March 2016, 06:15:54 UTC Merge branch 'master' into ontology-part-of 03 March 2016, 06:15:54 UTC
2c86271 Idan Gabdank 03 March 2016, 06:10:20 UTC removed conflicting mixin/attachment from the properties of generic_quality_metric 03 March 2016, 06:10:20 UTC
e54df5f Idan Gabdank 03 March 2016, 01:27:08 UTC added generic QC metric to quality_metric collections 03 March 2016, 01:27:08 UTC
897a0e1 David Glick 01 March 2016, 05:28:21 UTC Matrix facet improvements -- see http://redmine.encodedcc.org/issues/3739 * Better formatting when there are 0 results * Show filters that aren't in the facet list, like we do for standard search * Include audit facets for users with search_audit permission 03 March 2016, 01:15:22 UTC
ed5a8c1 Ben Hitz 03 March 2016, 01:12:11 UTC Merge pull request #1201 from ENCODE-DCC/3592-control-depth 3592 control depth 03 March 2016, 01:12:11 UTC
c89d45f Ben Hitz 03 March 2016, 01:11:35 UTC Merge pull request #1200 from ENCODE-DCC/3570-biosample-summary 3570 biosample summary 03 March 2016, 01:11:35 UTC
64731bf Ben Hitz 03 March 2016, 01:09:59 UTC Merge pull request #1199 from ENCODE-DCC/3788-mgi 3788 MGI linkouts 03 March 2016, 01:09:59 UTC
cec8f77 Ben Hitz 03 March 2016, 01:06:41 UTC Merge pull request #1198 from ENCODE-DCC/3690-type-facet 3690 type facet 03 March 2016, 01:06:41 UTC
11a3d96 Idan Gabdank 03 March 2016, 01:00:28 UTC Merge branch 'master' into 3720-generic-qc-metric 03 March 2016, 01:00:28 UTC
673aca5 Idan Gabdank 03 March 2016, 01:00:05 UTC added generic qc metric object to schemas 03 March 2016, 01:00:05 UTC
0e2cc85 Idan Gabdank 03 March 2016, 00:37:56 UTC fixed audit script error that happened in cases biosamples were not given biosample_term_name 03 March 2016, 00:37:56 UTC
3762d47 Ben Hitz 03 March 2016, 00:28:21 UTC Merge pull request #1202 from ENCODE-DCC/revert-1196-3563-boto3 Revert "3563 boto3" 03 March 2016, 00:28:21 UTC
08f5e67 Ben Hitz 03 March 2016, 00:27:08 UTC Revert "3563 boto3" 03 March 2016, 00:27:08 UTC
44b833e Idan Gabdank 02 March 2016, 23:57:33 UTC Merge branch 'master' into ontology-part-of 02 March 2016, 23:57:33 UTC
06b5bc2 Idan Gabdank 02 March 2016, 23:57:31 UTC changed audit level to DCC_ACTION for inconsistent part_of term id 02 March 2016, 23:57:31 UTC
8887a31 Ben Hitz 02 March 2016, 23:15:45 UTC Merge pull request #1196 from ENCODE-DCC/3563-boto3 3563 boto3 02 March 2016, 23:15:45 UTC
962915a Idan Gabdank 02 March 2016, 22:27:41 UTC corrected the audit wording 02 March 2016, 22:27:41 UTC
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