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https://github.com/ENCODE-DCC/encoded
17 March 2024, 18:08:03 UTC
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Revision Author Date Message Commit Date
ef2fd45 Forrest Tanaka 22 June 2016, 22:35:14 UTC Got sorter and objSorter confused Converted all file table date sorting to use sorter method. 22 June 2016, 22:35:14 UTC
9408438 Ben Hitz 17 June 2016, 20:08:17 UTC Merge pull request #1385 from ENCODE-DCC/4072-cleaning-file-audit 4072 cleaning file audit 17 June 2016, 20:08:17 UTC
e1e374d Ben Hitz 17 June 2016, 20:07:17 UTC Merge pull request #1384 from ENCODE-DCC/4151-filtering-ref 4151 Default filter for Reference is All 17 June 2016, 20:07:17 UTC
99ad304 Ben Hitz 17 June 2016, 20:05:51 UTC Merge pull request #1383 from ENCODE-DCC/4164-assembly-fastq 4164 assembly fastq 17 June 2016, 20:05:51 UTC
a71cc9b Idan Gabdank 15 June 2016, 19:20:47 UTC fixed the error message 15 June 2016, 19:20:47 UTC
7248361 Idan Gabdank 15 June 2016, 03:15:42 UTC fixed the audit for catching fastqs with assembly 15 June 2016, 03:15:42 UTC
0ba4fe5 Idan Gabdank 14 June 2016, 21:00:02 UTC added an audit for fastqs with assembly specified 14 June 2016, 21:00:02 UTC
4d93cac Idan Gabdank 14 June 2016, 13:47:07 UTC added missing audit for missing read depth information for RNA assays 14 June 2016, 13:47:07 UTC
d5638dd Idan Gabdank 14 June 2016, 13:40:27 UTC Merge branch 'master' into 4072-cleaning-file-audit 14 June 2016, 13:40:27 UTC
d7bee41 Forrest Tanaka 13 June 2016, 22:33:10 UTC Default filter for Reference is All 13 June 2016, 22:33:10 UTC
7768776 Idan Gabdank 13 June 2016, 17:09:16 UTC Merge branch 'master' into 4072-cleaning-file-audit 13 June 2016, 17:09:16 UTC
08b8d6b Ben Hitz 13 June 2016, 17:08:37 UTC Merge pull request #1382 from ENCODE-DCC/3692-status-upgrade 3692 status upgrade 13 June 2016, 17:08:37 UTC
6301319 Ben Hitz 13 June 2016, 17:07:16 UTC Merge pull request #1372 from ENCODE-DCC/4129-fix-matrix-no-results 4129: fix error with empty matrix results 13 June 2016, 17:07:16 UTC
0550b69 Idan Gabdank 13 June 2016, 15:40:33 UTC Merge branch 'master' into 3692-status-upgrade 13 June 2016, 15:40:33 UTC
a442605 Ben Hitz 12 June 2016, 17:50:14 UTC Merge pull request #1381 from ENCODE-DCC/4086-replicate-nos 4086 Replicate table with two biological replicates and no library 12 June 2016, 17:50:14 UTC
ce99b16 Ben Hitz 12 June 2016, 17:49:31 UTC Merge pull request #1380 from ENCODE-DCC/4041-edge-graph 4041 Handle non-functional graph download button on MS Edge 12 June 2016, 17:49:31 UTC
18854a3 Forrest Tanaka 10 June 2016, 21:53:27 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4086-replicate-nos 10 June 2016, 21:53:27 UTC
b56fc5b Forrest Tanaka 10 June 2016, 21:35:57 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4041-edge-graph 10 June 2016, 21:35:57 UTC
72f91a8 Ben Hitz 08 June 2016, 04:21:43 UTC Merge pull request #1379 from ENCODE-DCC/4090-bam-derived-from 4090 bam derived from 08 June 2016, 04:21:43 UTC
90da50f Ben Hitz 08 June 2016, 04:21:11 UTC Merge pull request #1378 from ENCODE-DCC/4059-replication-collapse 4059 replication collapse 08 June 2016, 04:21:11 UTC
eec461a Ben Hitz 08 June 2016, 04:20:49 UTC Merge pull request #1377 from ENCODE-DCC/4142-missing-size fixing RNA library size audit to yield instead of raising 08 June 2016, 04:20:49 UTC
968820a Ben Hitz 08 June 2016, 04:20:07 UTC Merge pull request #1376 from ENCODE-DCC/3882-target-sort 3882 target sort 08 June 2016, 04:20:07 UTC
6fffb20 Ben Hitz 08 June 2016, 04:19:28 UTC Merge pull request #1373 from ENCODE-DCC/4130-filtering-arrows 4130 Eliminate unnecessary arrows with no filtering menu 08 June 2016, 04:19:28 UTC
9168164 Idan Gabdank 07 June 2016, 16:50:07 UTC removing duplication of the audit with empty derived_from 07 June 2016, 16:50:07 UTC
cb74b64 Idan Gabdank 07 June 2016, 16:45:50 UTC Merge branch 'master' into 4090-bam-derived-from 07 June 2016, 16:45:50 UTC
e55b608 Idan Gabdank 06 June 2016, 23:16:01 UTC Merge branch 'master' into 4059-replication-collapse 06 June 2016, 23:16:01 UTC
4addfc9 Forrest Tanaka 06 June 2016, 19:34:45 UTC Disable DL button in MS Edge Edge still doesn’t support PNG download. 06 June 2016, 19:34:45 UTC
cbb7062 estherc 06 June 2016, 18:51:03 UTC Fixed download report test 06 June 2016, 18:51:03 UTC
c57c0ab estherc 06 June 2016, 17:51:40 UTC Add target.gene to experiment columns 06 June 2016, 17:51:40 UTC
a4f1bfa Idan Gabdank 06 June 2016, 17:28:48 UTC fixing RNA library size audit to yield instead of raising 06 June 2016, 17:28:48 UTC
0c9aa16 Forrest Tanaka 06 June 2016, 14:57:22 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4086-replicate-nos 06 June 2016, 14:57:22 UTC
7b03557 Forrest Tanaka 06 June 2016, 14:41:56 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4130-filtering-arrows 06 June 2016, 14:41:56 UTC
4296b32 Ben Hitz 06 June 2016, 00:44:10 UTC Merge pull request #1374 from ENCODE-DCC/4123-reroute-files-limit-all 4123 reroute files limit all 06 June 2016, 00:44:10 UTC
22f4915 Forrest Tanaka 03 June 2016, 21:13:14 UTC Treat libraryless replicates individually It was condensing all libraryless replicates into one row. It now puts all libraryless replicates into each of their own rows. 03 June 2016, 21:13:14 UTC
0161372 Ulugbek Baymuradov 03 June 2016, 21:10:15 UTC only redirect GETs 03 June 2016, 21:10:15 UTC
8a6b0fd Ulugbek Baymuradov 03 June 2016, 18:18:00 UTC redirect /files/ to /search/?type=file 03 June 2016, 18:18:00 UTC
0be6eeb Forrest Tanaka 02 June 2016, 18:18:06 UTC Make entire div conditional on filterOptions Was making only its contents conditional. Second copy of this menu already has its entire div conditional. 02 June 2016, 18:18:06 UTC
1217257 David Glick 02 June 2016, 18:02:18 UTC handle empty matrix results 02 June 2016, 18:02:18 UTC
14c74d5 Ben Hitz 02 June 2016, 16:35:04 UTC Merge pull request #1371 from ENCODE-DCC/4127-travis-ci-timeout increase travis-ci timeout to 400s 02 June 2016, 16:35:04 UTC
52b7256 Ben Hitz 02 June 2016, 00:54:18 UTC increase travis-ci timeout to 400s 02 June 2016, 00:54:18 UTC
29c162f Ben Hitz 01 June 2016, 18:21:49 UTC Merge pull request #1369 from ENCODE-DCC/elastic-cluster 3889 Elastic cluster 01 June 2016, 18:21:49 UTC
b1daaf4 Ben Hitz 01 June 2016, 16:43:52 UTC Merge pull request #1370 from ENCODE-DCC/4098-table-checkerboard 4098 table checkerboard pattern below 01 June 2016, 16:43:52 UTC
d30f9f0 Ulugbek Baymuradov 01 June 2016, 16:03:34 UTC removing assertion on sorted scan 01 June 2016, 16:03:34 UTC
630e687 Idan Gabdank 31 May 2016, 22:15:51 UTC Merge branch 'master' into 3692-status-upgrade 31 May 2016, 22:15:51 UTC
875bd2a Ulugbek Baymuradov 31 May 2016, 21:44:33 UTC Merge branch 'master' into elastic-cluster 31 May 2016, 21:44:33 UTC
a174751 Forrest Tanaka 31 May 2016, 20:42:05 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4098-table-checkerboard 31 May 2016, 20:42:05 UTC
d6071c6 Idan Gabdank 31 May 2016, 19:29:13 UTC removed h3k9me3 that is not needed in control bam read depth 31 May 2016, 19:29:13 UTC
8491f4c Idan Gabdank 31 May 2016, 19:20:05 UTC Merge branch 'master' into 4072-cleaning-file-audit 31 May 2016, 19:20:05 UTC
d197702 Ben Hitz 31 May 2016, 14:48:47 UTC Merge pull request #1364 from ENCODE-DCC/3329-combo-widget-2 3329 updates to combo widget 31 May 2016, 14:48:47 UTC
5be3086 Ben Hitz 31 May 2016, 14:48:09 UTC Merge pull request #1365 from ENCODE-DCC/4092-qc-merge-correction 4092 Fix merge error 31 May 2016, 14:48:09 UTC
73a4483 Ben Hitz 31 May 2016, 14:47:47 UTC Merge pull request #1366 from ENCODE-DCC/4200-mm10-minimal-visualize Minimal change to make mm10-minimal mimic mm10 for making trackHubs. 31 May 2016, 14:47:47 UTC
3a54057 Ben Hitz 31 May 2016, 14:47:05 UTC Merge pull request #1367 from ENCODE-DCC/4099-dataset-tables 4099 Display file gallery on all dataset pages 31 May 2016, 14:47:05 UTC
57a23a8 Ben Hitz 31 May 2016, 14:45:46 UTC Merge pull request #1368 from ENCODE-DCC/4109-remove-motif-audit Removed unapproved char method audit and test 31 May 2016, 14:45:46 UTC
6bad888 Idan Gabdank 28 May 2016, 15:28:48 UTC fixed test of file audit 28 May 2016, 15:28:48 UTC
97c146b Idan Gabdank 28 May 2016, 00:25:03 UTC yet another in process removed 28 May 2016, 00:25:03 UTC
8de2309 Idan Gabdank 28 May 2016, 00:23:34 UTC cleaned the code in the file audit 28 May 2016, 00:23:34 UTC
b2c8434 Idan Gabdank 27 May 2016, 23:42:59 UTC fixed test_types_experiment to check for anisogenic 27 May 2016, 23:42:59 UTC
a4f95f4 Idan Gabdank 27 May 2016, 23:40:22 UTC another few in progress 27 May 2016, 23:40:22 UTC
3d7ae22 estherc 27 May 2016, 23:34:02 UTC Removed unapproved char method audit and test 27 May 2016, 23:34:02 UTC
e5649e6 Idan Gabdank 27 May 2016, 22:15:37 UTC fixed another 'in progress' 27 May 2016, 22:15:37 UTC
49b5dbd Ulugbek Baymuradov 27 May 2016, 21:57:30 UTC fix peak metadata download in clustered mode 27 May 2016, 21:57:30 UTC
9c6b012 Idan Gabdank 27 May 2016, 21:52:58 UTC collapsed RNA-pipeline missing read depth into ‘missing read depth’ removed this message from file audit cleaned the code of audit_file_read_depth, and renamed it to be audit_file_chip_seq_control_read_depth 27 May 2016, 21:52:58 UTC
41978ba Idan Gabdank 27 May 2016, 21:14:35 UTC updated experimental audit to include only anisogenic 27 May 2016, 21:14:35 UTC
c3b0857 Idan Gabdank 27 May 2016, 21:12:05 UTC modified the calculated property code collapsing any anisogenic replication into simply anisogenic 27 May 2016, 21:12:05 UTC
e70d1eb Idan Gabdank 27 May 2016, 20:45:05 UTC fixed data fixtures experimental status 27 May 2016, 20:45:05 UTC
0101ce0 Idan Gabdank 27 May 2016, 20:08:41 UTC fixing audits and test_audits to include inly valid statuses 27 May 2016, 20:08:41 UTC
923621f Idan Gabdank 27 May 2016, 18:54:17 UTC status upgrade of experiment removed the following statuses: in progress, in review, release ready, verified and preliminary. In existing schemas the statuses will be replaced by started, revoked, verified and proposed 27 May 2016, 18:54:17 UTC
d0a35bd Forrest Tanaka 27 May 2016, 18:45:16 UTC Put checkerboard on file tables only 27 May 2016, 18:45:16 UTC
03fc897 Forrest Tanaka 27 May 2016, 17:38:10 UTC Display file gallery on all dataset pages Now use a flag to indicate whether to draw a graph or not. 27 May 2016, 17:38:10 UTC
b823dad Idan Gabdank 27 May 2016, 17:36:51 UTC added audit for bam files without FASTQ in derived from list 27 May 2016, 17:36:51 UTC
cf99f55 Forrest Tanaka 27 May 2016, 16:58:32 UTC Fix merge error Part of moving code around and adding a new module to avoid circular dependencies for annotations displaying file tables 27 May 2016, 16:58:32 UTC
0635d52 Tim Dreszer 27 May 2016, 16:52:12 UTC Minimal change to make mm10-minimal mimic mm10 for making trackHubs. 27 May 2016, 16:52:12 UTC
a1fecb3 Ben Hitz 27 May 2016, 03:28:36 UTC Merge pull request #1361 from ENCODE-DCC/4092-qc-title 4092 modify QC details panel title to show QC type as part of title 27 May 2016, 03:28:36 UTC
e2b6222 Forrest Tanaka 27 May 2016, 03:06:29 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3329-combo-widget-2 27 May 2016, 03:06:29 UTC
0ef2988 Forrest Tanaka 27 May 2016, 03:01:48 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4092-qc-title # Conflicts: # src/encoded/static/components/experiment.js 27 May 2016, 03:01:48 UTC
1573bb7 Ben Hitz 27 May 2016, 02:21:33 UTC Merge pull request #1363 from ENCODE-DCC/4044-wal-e-crontab 4044 wal e crontab 27 May 2016, 02:21:33 UTC
e337ae6 Ben Hitz 27 May 2016, 02:21:04 UTC Merge pull request #1362 from ENCODE-DCC/3992-continued 3992 continued 27 May 2016, 02:21:04 UTC
358b48e Forrest Tanaka 27 May 2016, 00:00:20 UTC Fix badges and missing ExperimentTable 27 May 2016, 00:00:20 UTC
1b66a4d Chris 26 May 2016, 23:40:04 UTC Edit for aws-deployment.rst 26 May 2016, 23:40:04 UTC
7c86cf5 Chris 26 May 2016, 23:38:52 UTC update: we are not going to use automation for wal-e to s3, it will be an added step to the aws deply procedure which i have updated. 26 May 2016, 23:38:52 UTC
41fee1e Forrest Tanaka 26 May 2016, 23:00:51 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3329-combo-widget-2 26 May 2016, 23:00:51 UTC
5947022 Forrest Tanaka 26 May 2016, 23:00:42 UTC Return audit trigger hover background 26 May 2016, 23:00:42 UTC
7af285f Ben Hitz 26 May 2016, 22:47:01 UTC Merge pull request #1360 from ENCODE-DCC/4015-truncate-indexer-errors 4015 truncate indexer errors 26 May 2016, 22:47:01 UTC
424ae6b Chris 26 May 2016, 22:36:40 UTC test 26 May 2016, 22:36:40 UTC
dd47bac Chris 26 May 2016, 22:35:01 UTC test 26 May 2016, 22:35:01 UTC
62d8b98 Chris 26 May 2016, 22:24:41 UTC fix 26 May 2016, 22:24:41 UTC
5ceb215 Forrest Tanaka 26 May 2016, 22:21:07 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3329-combo-widget-2 26 May 2016, 22:21:07 UTC
734e33e Forrest Tanaka 26 May 2016, 22:20:59 UTC Corrected <select> styling Mostly cross-browser issues. 26 May 2016, 22:20:59 UTC
25ea68a Chris 26 May 2016, 21:38:52 UTC adding update to cron.daily 26 May 2016, 21:38:52 UTC
4baff64 Idan Gabdank 26 May 2016, 21:31:13 UTC Merge branch 'master' into 3992-continued 26 May 2016, 21:31:13 UTC
0fd0510 Ben Hitz 26 May 2016, 21:20:35 UTC Merge pull request #1359 from ENCODE-DCC/3775-antibody-audits 3775 antibody audits 26 May 2016, 21:20:35 UTC
834f68a Ben Hitz 26 May 2016, 21:20:07 UTC Merge pull request #1358 from ENCODE-DCC/4045-annotation-graph 4045 Graphs for Annotation Datasets 26 May 2016, 21:20:07 UTC
f12e3aa Ben Hitz 26 May 2016, 21:18:27 UTC Merge pull request #1357 from ENCODE-DCC/4000-compliant-over-exempt 4000 compliant over exempt 26 May 2016, 21:18:27 UTC
9dcb6cf Chris 26 May 2016, 21:16:27 UTC finishing testing 26 May 2016, 21:16:27 UTC
c92f41d Chris 26 May 2016, 20:44:09 UTC adding crontab to an if for demo as a test, if working then will change for production 26 May 2016, 20:44:09 UTC
1ebd480 Forrest Tanaka 26 May 2016, 20:41:52 UTC Finish collapsing titles with filter menu 26 May 2016, 20:41:52 UTC
906fafa Forrest Tanaka 26 May 2016, 17:48:17 UTC Finish filtering menu in process file table Still need to stop reacting to clicks anywhere on file table header bars and move them to their own trigger to fix problem with nested element clicks. 26 May 2016, 17:48:17 UTC
29c646e Forrest Tanaka 26 May 2016, 17:07:40 UTC Fix missing attachment display New conditional prevented display if the attachment property in the quality_metric was 'attachment'. 26 May 2016, 17:07:40 UTC
4158cd1 Forrest Tanaka 26 May 2016, 15:43:21 UTC In progress About to make a larger change to pass filterOption current value instead of selectedAnnotation and selectedAssembly. Marking this point in case I need to go back. 26 May 2016, 15:43:21 UTC
8f406cf estherc 26 May 2016, 05:56:58 UTC Merge branch 'master' into 3775-antibody-audits 26 May 2016, 05:56:58 UTC
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