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https://github.com/ENCODE-DCC/encoded
17 March 2024, 18:08:03 UTC
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Revision Author Date Message Commit Date
a4f1bfa Idan Gabdank 06 June 2016, 17:28:48 UTC fixing RNA library size audit to yield instead of raising 06 June 2016, 17:28:48 UTC
4296b32 Ben Hitz 06 June 2016, 00:44:10 UTC Merge pull request #1374 from ENCODE-DCC/4123-reroute-files-limit-all 4123 reroute files limit all 06 June 2016, 00:44:10 UTC
0161372 Ulugbek Baymuradov 03 June 2016, 21:10:15 UTC only redirect GETs 03 June 2016, 21:10:15 UTC
8a6b0fd Ulugbek Baymuradov 03 June 2016, 18:18:00 UTC redirect /files/ to /search/?type=file 03 June 2016, 18:18:00 UTC
14c74d5 Ben Hitz 02 June 2016, 16:35:04 UTC Merge pull request #1371 from ENCODE-DCC/4127-travis-ci-timeout increase travis-ci timeout to 400s 02 June 2016, 16:35:04 UTC
52b7256 Ben Hitz 02 June 2016, 00:54:18 UTC increase travis-ci timeout to 400s 02 June 2016, 00:54:18 UTC
29c162f Ben Hitz 01 June 2016, 18:21:49 UTC Merge pull request #1369 from ENCODE-DCC/elastic-cluster 3889 Elastic cluster 01 June 2016, 18:21:49 UTC
b1daaf4 Ben Hitz 01 June 2016, 16:43:52 UTC Merge pull request #1370 from ENCODE-DCC/4098-table-checkerboard 4098 table checkerboard pattern below 01 June 2016, 16:43:52 UTC
d30f9f0 Ulugbek Baymuradov 01 June 2016, 16:03:34 UTC removing assertion on sorted scan 01 June 2016, 16:03:34 UTC
875bd2a Ulugbek Baymuradov 31 May 2016, 21:44:33 UTC Merge branch 'master' into elastic-cluster 31 May 2016, 21:44:33 UTC
a174751 Forrest Tanaka 31 May 2016, 20:42:05 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4098-table-checkerboard 31 May 2016, 20:42:05 UTC
d197702 Ben Hitz 31 May 2016, 14:48:47 UTC Merge pull request #1364 from ENCODE-DCC/3329-combo-widget-2 3329 updates to combo widget 31 May 2016, 14:48:47 UTC
5be3086 Ben Hitz 31 May 2016, 14:48:09 UTC Merge pull request #1365 from ENCODE-DCC/4092-qc-merge-correction 4092 Fix merge error 31 May 2016, 14:48:09 UTC
73a4483 Ben Hitz 31 May 2016, 14:47:47 UTC Merge pull request #1366 from ENCODE-DCC/4200-mm10-minimal-visualize Minimal change to make mm10-minimal mimic mm10 for making trackHubs. 31 May 2016, 14:47:47 UTC
3a54057 Ben Hitz 31 May 2016, 14:47:05 UTC Merge pull request #1367 from ENCODE-DCC/4099-dataset-tables 4099 Display file gallery on all dataset pages 31 May 2016, 14:47:05 UTC
57a23a8 Ben Hitz 31 May 2016, 14:45:46 UTC Merge pull request #1368 from ENCODE-DCC/4109-remove-motif-audit Removed unapproved char method audit and test 31 May 2016, 14:45:46 UTC
3d7ae22 estherc 27 May 2016, 23:34:02 UTC Removed unapproved char method audit and test 27 May 2016, 23:34:02 UTC
49b5dbd Ulugbek Baymuradov 27 May 2016, 21:57:30 UTC fix peak metadata download in clustered mode 27 May 2016, 21:57:30 UTC
d0a35bd Forrest Tanaka 27 May 2016, 18:45:16 UTC Put checkerboard on file tables only 27 May 2016, 18:45:16 UTC
03fc897 Forrest Tanaka 27 May 2016, 17:38:10 UTC Display file gallery on all dataset pages Now use a flag to indicate whether to draw a graph or not. 27 May 2016, 17:38:10 UTC
cf99f55 Forrest Tanaka 27 May 2016, 16:58:32 UTC Fix merge error Part of moving code around and adding a new module to avoid circular dependencies for annotations displaying file tables 27 May 2016, 16:58:32 UTC
0635d52 Tim Dreszer 27 May 2016, 16:52:12 UTC Minimal change to make mm10-minimal mimic mm10 for making trackHubs. 27 May 2016, 16:52:12 UTC
a1fecb3 Ben Hitz 27 May 2016, 03:28:36 UTC Merge pull request #1361 from ENCODE-DCC/4092-qc-title 4092 modify QC details panel title to show QC type as part of title 27 May 2016, 03:28:36 UTC
e2b6222 Forrest Tanaka 27 May 2016, 03:06:29 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3329-combo-widget-2 27 May 2016, 03:06:29 UTC
0ef2988 Forrest Tanaka 27 May 2016, 03:01:48 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4092-qc-title # Conflicts: # src/encoded/static/components/experiment.js 27 May 2016, 03:01:48 UTC
1573bb7 Ben Hitz 27 May 2016, 02:21:33 UTC Merge pull request #1363 from ENCODE-DCC/4044-wal-e-crontab 4044 wal e crontab 27 May 2016, 02:21:33 UTC
e337ae6 Ben Hitz 27 May 2016, 02:21:04 UTC Merge pull request #1362 from ENCODE-DCC/3992-continued 3992 continued 27 May 2016, 02:21:04 UTC
358b48e Forrest Tanaka 27 May 2016, 00:00:20 UTC Fix badges and missing ExperimentTable 27 May 2016, 00:00:20 UTC
1b66a4d Chris 26 May 2016, 23:40:04 UTC Edit for aws-deployment.rst 26 May 2016, 23:40:04 UTC
7c86cf5 Chris 26 May 2016, 23:38:52 UTC update: we are not going to use automation for wal-e to s3, it will be an added step to the aws deply procedure which i have updated. 26 May 2016, 23:38:52 UTC
41fee1e Forrest Tanaka 26 May 2016, 23:00:51 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3329-combo-widget-2 26 May 2016, 23:00:51 UTC
5947022 Forrest Tanaka 26 May 2016, 23:00:42 UTC Return audit trigger hover background 26 May 2016, 23:00:42 UTC
7af285f Ben Hitz 26 May 2016, 22:47:01 UTC Merge pull request #1360 from ENCODE-DCC/4015-truncate-indexer-errors 4015 truncate indexer errors 26 May 2016, 22:47:01 UTC
424ae6b Chris 26 May 2016, 22:36:40 UTC test 26 May 2016, 22:36:40 UTC
dd47bac Chris 26 May 2016, 22:35:01 UTC test 26 May 2016, 22:35:01 UTC
62d8b98 Chris 26 May 2016, 22:24:41 UTC fix 26 May 2016, 22:24:41 UTC
5ceb215 Forrest Tanaka 26 May 2016, 22:21:07 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 3329-combo-widget-2 26 May 2016, 22:21:07 UTC
734e33e Forrest Tanaka 26 May 2016, 22:20:59 UTC Corrected <select> styling Mostly cross-browser issues. 26 May 2016, 22:20:59 UTC
25ea68a Chris 26 May 2016, 21:38:52 UTC adding update to cron.daily 26 May 2016, 21:38:52 UTC
4baff64 Idan Gabdank 26 May 2016, 21:31:13 UTC Merge branch 'master' into 3992-continued 26 May 2016, 21:31:13 UTC
0fd0510 Ben Hitz 26 May 2016, 21:20:35 UTC Merge pull request #1359 from ENCODE-DCC/3775-antibody-audits 3775 antibody audits 26 May 2016, 21:20:35 UTC
834f68a Ben Hitz 26 May 2016, 21:20:07 UTC Merge pull request #1358 from ENCODE-DCC/4045-annotation-graph 4045 Graphs for Annotation Datasets 26 May 2016, 21:20:07 UTC
f12e3aa Ben Hitz 26 May 2016, 21:18:27 UTC Merge pull request #1357 from ENCODE-DCC/4000-compliant-over-exempt 4000 compliant over exempt 26 May 2016, 21:18:27 UTC
9dcb6cf Chris 26 May 2016, 21:16:27 UTC finishing testing 26 May 2016, 21:16:27 UTC
c92f41d Chris 26 May 2016, 20:44:09 UTC adding crontab to an if for demo as a test, if working then will change for production 26 May 2016, 20:44:09 UTC
1ebd480 Forrest Tanaka 26 May 2016, 20:41:52 UTC Finish collapsing titles with filter menu 26 May 2016, 20:41:52 UTC
906fafa Forrest Tanaka 26 May 2016, 17:48:17 UTC Finish filtering menu in process file table Still need to stop reacting to clicks anywhere on file table header bars and move them to their own trigger to fix problem with nested element clicks. 26 May 2016, 17:48:17 UTC
29c646e Forrest Tanaka 26 May 2016, 17:07:40 UTC Fix missing attachment display New conditional prevented display if the attachment property in the quality_metric was 'attachment'. 26 May 2016, 17:07:40 UTC
4158cd1 Forrest Tanaka 26 May 2016, 15:43:21 UTC In progress About to make a larger change to pass filterOption current value instead of selectedAnnotation and selectedAssembly. Marking this point in case I need to go back. 26 May 2016, 15:43:21 UTC
8f406cf estherc 26 May 2016, 05:56:58 UTC Merge branch 'master' into 3775-antibody-audits 26 May 2016, 05:56:58 UTC
0032557 Idan Gabdank 26 May 2016, 04:48:46 UTC correcting the file ERCC spike-ins fro single cell 26 May 2016, 04:48:46 UTC
627b3b5 estherc 26 May 2016, 04:36:01 UTC Fixed biosample typo in audit message 26 May 2016, 04:36:01 UTC
c0116fa estherc 26 May 2016, 04:09:33 UTC Edit need primary char audit message 26 May 2016, 04:09:33 UTC
dd78995 estherc 26 May 2016, 03:56:53 UTC Add not reviewed characterizations audit 26 May 2016, 03:56:53 UTC
747d5a5 Forrest Tanaka 26 May 2016, 00:01:19 UTC In progress 26 May 2016, 00:01:19 UTC
41ac883 estherc 25 May 2016, 23:43:03 UTC Add biosample term name detail to primary char audit 25 May 2016, 23:43:03 UTC
1709300 Idan Gabdank 25 May 2016, 23:21:20 UTC corrected the audit wording to be 'aligned reads' 25 May 2016, 23:21:20 UTC
115dbcd Forrest Tanaka 25 May 2016, 23:12:12 UTC Change disclosure icons …to plus and minus instead of carets. Also hide graph if all assemblies selected. 25 May 2016, 23:12:12 UTC
0a592d2 Ulugbek Baymuradov 25 May 2016, 23:10:41 UTC another one 25 May 2016, 23:10:41 UTC
9a8f151 Ulugbek Baymuradov 25 May 2016, 23:09:08 UTC done fixing conflicts 25 May 2016, 23:09:08 UTC
801e819 Ulugbek Baymuradov 25 May 2016, 23:02:04 UTC fix merge conflicts 2 25 May 2016, 23:02:04 UTC
6ba7651 Ulugbek Baymuradov 25 May 2016, 22:55:14 UTC fix merge conflicts 25 May 2016, 22:55:14 UTC
8d01be8 Chris 25 May 2016, 22:46:52 UTC added postgress user to command 25 May 2016, 22:46:52 UTC
dd0667b Idan Gabdank 25 May 2016, 17:55:38 UTC add an audit for reads files with read_length = 0 25 May 2016, 17:55:38 UTC
1e5f672 Idan Gabdank 25 May 2016, 17:50:26 UTC changed "mixed read lengths" audit the audit will not trigger for read length differences up to +- 2 25 May 2016, 17:50:26 UTC
7245ba6 Forrest Tanaka 25 May 2016, 17:36:49 UTC Change QC title according to ticket 25 May 2016, 17:36:49 UTC
bbbca8b Idan Gabdank 25 May 2016, 17:31:00 UTC modified audit 'unexpected run-type' to be 'non-standard run type' removed duplicated report on missing run_type - it is already checked in file audit 25 May 2016, 17:31:00 UTC
4944858 Forrest Tanaka 24 May 2016, 22:55:19 UTC Correct old jest test 24 May 2016, 22:55:19 UTC
562e811 Forrest Tanaka 24 May 2016, 22:52:52 UTC [this] might not always exist when loading dagre 24 May 2016, 22:52:52 UTC
8aadbaf Idan Gabdank 24 May 2016, 22:43:11 UTC fixed a few things WGBS read length down to 100 missing run_type WARNING collapse missing target ERROR collapse 24 May 2016, 22:43:11 UTC
53bbfa4 Idan Gabdank 24 May 2016, 22:22:47 UTC Merge branch 'master' into 3992-continued 24 May 2016, 22:22:47 UTC
00d6151 Forrest Tanaka 24 May 2016, 17:34:29 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4045-annotation-graph 24 May 2016, 17:34:29 UTC
793f4c6 Forrest Tanaka 24 May 2016, 17:27:18 UTC Remove some test data 24 May 2016, 17:27:18 UTC
00bccef Forrest Tanaka 24 May 2016, 17:24:29 UTC Fix contributing_files problem. 24 May 2016, 17:24:29 UTC
0895d06 Ben Hitz 24 May 2016, 13:17:00 UTC Merge pull request #1356 from ENCODE-DCC/4084-microRNA 4084 microRNA 24 May 2016, 13:17:00 UTC
f66d44c Ulugbek Baymuradov 23 May 2016, 23:12:06 UTC fixed a bug with generator looping over results infinitely 23 May 2016, 23:12:06 UTC
8c7e593 Forrest Tanaka 23 May 2016, 22:44:54 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4045-annotation-graph 23 May 2016, 22:44:54 UTC
7af1aa1 Forrest Tanaka 23 May 2016, 22:44:47 UTC Have annotations display graphs 23 May 2016, 22:44:47 UTC
51828be Idan Gabdank 23 May 2016, 22:16:21 UTC fixed test of controlled_by read depth 23 May 2016, 22:16:21 UTC
fd07af5 Idan Gabdank 23 May 2016, 22:12:29 UTC Merge branch 'master' into 3992-continued 23 May 2016, 22:12:29 UTC
407a6af Idan Gabdank 23 May 2016, 22:12:27 UTC removed 'derived_from' audits from file 23 May 2016, 22:12:27 UTC
885490d Ben Hitz 23 May 2016, 22:08:12 UTC Merge pull request #1354 from ENCODE-DCC/3329-combo-widget-2 3329 combined graph and filters panel. 23 May 2016, 22:08:12 UTC
7f1cdb8 Ben Hitz 23 May 2016, 22:07:06 UTC Merge pull request #1352 from ENCODE-DCC/4069-Heap-Size-Bug 4069 heap size bug 23 May 2016, 22:07:06 UTC
9dc24c9 Idan Gabdank 23 May 2016, 21:54:07 UTC Merge branch 'master' into 4084-microRNA 23 May 2016, 21:54:07 UTC
8643235 Idan Gabdank 23 May 2016, 21:51:32 UTC fixed incorrect assembly comparisons in control bams 23 May 2016, 21:51:32 UTC
f161c9b estherc 23 May 2016, 21:51:12 UTC Fix secondary status override 23 May 2016, 21:51:12 UTC
6a06550 estherc 23 May 2016, 21:30:37 UTC Change rank key for status lookup 23 May 2016, 21:30:37 UTC
b7fcbd8 estherc 23 May 2016, 21:25:02 UTC Exclude controls from audit 23 May 2016, 21:25:02 UTC
93287ef Idan Gabdank 23 May 2016, 20:44:49 UTC fixed the usage of unfiltered alignments for read depth in controls 23 May 2016, 20:44:49 UTC
1aac289 Idan Gabdank 23 May 2016, 20:39:44 UTC collapsing duplicates missing run_type into one WARNING 23 May 2016, 20:39:44 UTC
9e3dce0 Ulugbek Baymuradov 23 May 2016, 20:27:34 UTC debug 23 May 2016, 20:27:34 UTC
7b6cf4c Idan Gabdank 23 May 2016, 20:22:06 UTC Merge branch 'master' into 3992-continued 23 May 2016, 20:22:06 UTC
cf05dee Idan Gabdank 23 May 2016, 20:22:03 UTC all RNA assays to report read depth a sum of unique and multi mapping reads 23 May 2016, 20:22:03 UTC
ff0dcc7 Forrest Tanaka 23 May 2016, 20:05:28 UTC Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4045-annotation-graph 23 May 2016, 20:05:28 UTC
b30e96b Forrest Tanaka 23 May 2016, 20:05:16 UTC Fix Jest Also rename ExperimentGraph component to FileGraph. 23 May 2016, 20:05:16 UTC
60eeb50 Ben Hitz 23 May 2016, 19:51:04 UTC Merge pull request #1355 from ENCODE-DCC/docfix sparql docs 23 May 2016, 19:51:04 UTC
b2ed533 Ben Hitz 23 May 2016, 19:50:43 UTC Update database.rst 23 May 2016, 19:50:43 UTC
a20e6c0 Ben Hitz 23 May 2016, 19:49:32 UTC Update database.rst 23 May 2016, 19:49:32 UTC
f5f6ea2 Ben Hitz 23 May 2016, 19:47:06 UTC sparql docs 23 May 2016, 19:47:06 UTC
5c6da68 Idan Gabdank 23 May 2016, 19:42:50 UTC Excluded ‘archived’ from ‘missing controlled_by' 23 May 2016, 19:42:50 UTC
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