https://github.com/ENCODE-DCC/encoded
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Revision | Author | Date | Message | Commit Date |
---|---|---|---|---|
6711b0c | Forrest Tanaka | 27 July 2016, 01:21:02 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4250-pennants | 27 July 2016, 01:21:02 UTC |
2a37811 | Forrest Tanaka | 27 July 2016, 01:20:48 UTC | Add nhgri pennant back Had replaced it with new ENCODE pennant. | 27 July 2016, 01:20:48 UTC |
80755b8 | Ben Hitz | 27 July 2016, 00:20:57 UTC | Merge pull request #1454 from ENCODE-DCC/revert-1448-4201-treatment-ant-bio Revert "4201 treatment ant bio" | 27 July 2016, 00:20:57 UTC |
29a40e0 | Ben Hitz | 27 July 2016, 00:20:47 UTC | Revert "4201 treatment ant bio" | 27 July 2016, 00:20:47 UTC |
3a75ff9 | Ben Hitz | 27 July 2016, 00:19:51 UTC | Merge pull request #1453 from ENCODE-DCC/4088-archived-files 4088 Display archived files in file tables and graphs | 27 July 2016, 00:19:51 UTC |
0a6fc85 | Ben Hitz | 27 July 2016, 00:18:58 UTC | Merge pull request #1448 from ENCODE-DCC/4201-treatment-ant-bio 4201 treatment ant bio | 27 July 2016, 00:18:58 UTC |
023f43f | Forrest Tanaka | 26 July 2016, 23:04:04 UTC | Updated ENCODE pennant Redmine #4250 | 26 July 2016, 23:04:04 UTC |
9f8b8f0 | Forrest Tanaka | 26 July 2016, 23:03:03 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4250-pennants | 26 July 2016, 23:03:03 UTC |
13b2d5a | Idan Gabdank | 26 July 2016, 22:46:23 UTC | calling the new field in treatment: 'biosamples_used' | 26 July 2016, 22:46:23 UTC |
d79013a | Idan Gabdank | 26 July 2016, 17:45:21 UTC | Merge branch 'master' into 4201-treatment-ant-bio | 26 July 2016, 17:45:21 UTC |
e7c0694 | Idan Gabdank | 26 July 2016, 17:45:18 UTC | renaming biosamples in treatment into biosample_components | 26 July 2016, 17:45:18 UTC |
16a3110 | Ben Hitz | 26 July 2016, 17:34:19 UTC | Merge pull request #1451 from ENCODE-DCC/4265-host 4265 host | 26 July 2016, 17:34:19 UTC |
2d4ff6a | Ben Hitz | 26 July 2016, 17:33:33 UTC | Merge pull request #1450 from ENCODE-DCC/4180-platforms 4180 platforms | 26 July 2016, 17:33:33 UTC |
c66768f | Ben Hitz | 26 July 2016, 17:32:33 UTC | Merge pull request #1449 from ENCODE-DCC/4308-nested-tad 4308 nested tad | 26 July 2016, 17:32:33 UTC |
40d2a4f | Forrest Tanaka | 26 July 2016, 17:24:38 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4088-archived-files | 26 July 2016, 17:24:38 UTC |
627c6c2 | Ben Hitz | 26 July 2016, 17:23:50 UTC | Merge pull request #1447 from ENCODE-DCC/4312-lock-tags locked internal tags | 26 July 2016, 17:23:50 UTC |
b765d4a | Forrest Tanaka | 26 July 2016, 17:18:31 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4088-archived-files | 26 July 2016, 17:18:31 UTC |
d9757b3 | Forrest Tanaka | 26 July 2016, 14:37:24 UTC | Update ENCODE pennant | 26 July 2016, 14:37:24 UTC |
bde0163 | Forrest Tanaka | 26 July 2016, 14:35:22 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4250-pennants | 26 July 2016, 14:35:22 UTC |
c34daca | Idan Gabdank | 25 July 2016, 20:02:54 UTC | added treatment with antibody to inserts | 25 July 2016, 20:02:54 UTC |
213680b | Idan Gabdank | 25 July 2016, 19:51:15 UTC | Merge branch 'master' into 4201-treatment-ant-bio | 25 July 2016, 19:51:15 UTC |
d2c3f68 | aditin14 | 25 July 2016, 15:54:20 UTC | added to output_category | 25 July 2016, 15:54:20 UTC |
bf4f80e | Idan Gabdank | 23 July 2016, 05:46:39 UTC | removed unnecessary test | 23 July 2016, 05:46:39 UTC |
d2c6537 | Idan Gabdank | 23 July 2016, 04:51:00 UTC | locked internal tags | 23 July 2016, 04:51:00 UTC |
48cfbc9 | Idan Gabdank | 23 July 2016, 04:43:48 UTC | merging master and resolving conflicts | 23 July 2016, 04:43:48 UTC |
40bfa83 | Idan Gabdank | 23 July 2016, 04:40:32 UTC | resolved conflicts # Conflicts: # src/encoded/audit/experiment.py # src/encoded/audit/file.py # src/encoded/tests/test_audit_experiment.py | 23 July 2016, 04:40:32 UTC |
c50d503 | Idan Gabdank | 23 July 2016, 04:03:40 UTC | Merge branch 'master' into 4265-host | 23 July 2016, 04:03:40 UTC |
88b66fd | Idan Gabdank | 23 July 2016, 04:03:30 UTC | fixed insert | 23 July 2016, 04:03:30 UTC |
9117414 | Ben Hitz | 23 July 2016, 02:52:53 UTC | Merge pull request #1445 from ENCODE-DCC/4297-tags-audit 4297 tags audit | 23 July 2016, 02:52:53 UTC |
d4683ce | Idan Gabdank | 23 July 2016, 00:08:39 UTC | started addition of biosample and antibody to treatments | 23 July 2016, 00:08:39 UTC |
63a69d4 | Idan Gabdank | 22 July 2016, 23:49:19 UTC | adding host property to biosample | 22 July 2016, 23:49:19 UTC |
2a38593 | Idan Gabdank | 22 July 2016, 23:28:51 UTC | Merge branch 'master' into 4297-tags-audit | 22 July 2016, 23:28:51 UTC |
d0f7490 | Idan Gabdank | 22 July 2016, 23:28:42 UTC | Merge branch 'master' into 4297-tags-audit | 22 July 2016, 23:28:42 UTC |
20ddee9 | Ben Hitz | 22 July 2016, 22:29:20 UTC | Merge pull request #1444 from ENCODE-DCC/4300-mapped_read_length Add mapped_read_length property to file object | 22 July 2016, 22:29:20 UTC |
a3829b1 | Forrest Tanaka | 22 July 2016, 21:17:28 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4088-archived-files # Conflicts: # src/encoded/static/components/globals.js | 22 July 2016, 21:17:28 UTC |
6639dc2 | Forrest Tanaka | 22 July 2016, 18:48:28 UTC | Allow archived files while logged out Involves changing dataset.py to include archived along with released files. Should be reviewed. | 22 July 2016, 18:48:28 UTC |
e65e555 | Ben Hitz | 22 July 2016, 18:38:36 UTC | Merge pull request #1443 from ENCODE-DCC/3294-antibody-status 3494 Antibody Status | 22 July 2016, 18:38:36 UTC |
cc4253c | Ben Hitz | 22 July 2016, 18:38:07 UTC | Merge pull request #1441 from ENCODE-DCC/4296-checkfiles-fix excluding 'replaced' files from uniqueness of content_md5sum requirement | 22 July 2016, 18:38:07 UTC |
cf7f87b | Ben Hitz | 22 July 2016, 18:37:33 UTC | Merge pull request #1440 from ENCODE-DCC/4222-encylopaedia-version 4222 Add encyclopedia version to matrix view of annotations | 22 July 2016, 18:37:33 UTC |
e9d267a | Ben Hitz | 22 July 2016, 18:37:00 UTC | Merge pull request #1439 from ENCODE-DCC/4288-S-cycle Added S to cell cycle phase in biosample.json | 22 July 2016, 18:37:00 UTC |
81d5973 | Ben Hitz | 22 July 2016, 18:35:12 UTC | Merge pull request #1442 from ENCODE-DCC/4242-502-search 4242 Eliminate 502 error when parens in search query string | 22 July 2016, 18:35:12 UTC |
54e558d | aditin14 | 22 July 2016, 16:33:22 UTC | Added nested tads to output_type in file.json | 22 July 2016, 16:33:22 UTC |
f2e81e5 | J. Seth Strattan | 21 July 2016, 23:59:31 UTC | Add mapped_read_length property to file object | 21 July 2016, 23:59:31 UTC |
4e093bf | Idan Gabdank | 21 July 2016, 22:40:20 UTC | restricting only for ENTEx and SESCC | 21 July 2016, 22:40:20 UTC |
46200cc | Idan Gabdank | 21 July 2016, 18:33:08 UTC | excluding DREAM from inconsistent internal_tags audit | 21 July 2016, 18:33:08 UTC |
f76f450 | Idan Gabdank | 21 July 2016, 17:55:12 UTC | fixing audit message | 21 July 2016, 17:55:12 UTC |
d18c0f5 | Forrest Tanaka | 20 July 2016, 23:55:53 UTC | Just add to matrix y facet list | 20 July 2016, 23:55:53 UTC |
763d2c8 | Forrest Tanaka | 20 July 2016, 19:01:13 UTC | Added “archived” to unreleased files list | 20 July 2016, 19:01:13 UTC |
3a7c9c9 | Forrest Tanaka | 20 July 2016, 15:40:13 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4242-502-search | 20 July 2016, 15:40:13 UTC |
9a46690 | Forrest Tanaka | 20 July 2016, 15:38:21 UTC | Add antibody status display Added to both search result pages and antibody pages. | 20 July 2016, 15:38:21 UTC |
fa38a2d | Forrest Tanaka | 20 July 2016, 15:01:43 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4250-pennants | 20 July 2016, 15:01:43 UTC |
f5030c6 | Idan Gabdank | 19 July 2016, 23:03:21 UTC | added inconsistent internal tags between biosamples belonging to the same experiment audit | 19 July 2016, 23:03:21 UTC |
b52857a | Idan Gabdank | 19 July 2016, 22:24:45 UTC | introduced internal tag audit for experiments | 19 July 2016, 22:24:45 UTC |
f9e3ca7 | Idan Gabdank | 19 July 2016, 21:12:42 UTC | excluding 'replaced' files from uniqueness of content_md5sum requirement | 19 July 2016, 21:12:42 UTC |
52681eb | aditin14 | 19 July 2016, 20:55:54 UTC | Added S to cell cycle phase in biosample.json | 19 July 2016, 20:55:54 UTC |
4ae4258 | Ben Hitz | 19 July 2016, 16:24:05 UTC | Merge pull request #1438 from ENCODE-DCC/html5lib 4250 Lock html5lib version | 19 July 2016, 16:24:05 UTC |
26f8279 | Forrest Tanaka | 19 July 2016, 15:07:37 UTC | Add pennant images | 19 July 2016, 15:07:37 UTC |
9bb20fe | Forrest Tanaka | 18 July 2016, 22:50:41 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into html5lib | 18 July 2016, 22:50:41 UTC |
4726d1c | Ben Hitz | 18 July 2016, 16:59:37 UTC | Merge pull request #1437 from ENCODE-DCC/4216-excluding-dream 4216 excluding dream | 18 July 2016, 16:59:37 UTC |
de0c015 | Forrest Tanaka | 17 July 2016, 04:30:40 UTC | Update to setuptools 18.5 Also correct xcode-select line. | 17 July 2016, 04:30:40 UTC |
641091a | Forrest Tanaka | 17 July 2016, 03:31:36 UTC | Try versions.cfg update for html5lib | 17 July 2016, 03:31:36 UTC |
5984186 | Forrest Tanaka | 16 July 2016, 17:06:55 UTC | Try different html5lib install | 16 July 2016, 17:06:55 UTC |
8663838 | Forrest Tanaka | 16 July 2016, 16:55:22 UTC | Try install html5lib 1.0b8 | 16 July 2016, 16:55:22 UTC |
d520f72 | Forrest Tanaka | 16 July 2016, 06:02:08 UTC | Update travis.yml | 16 July 2016, 06:02:08 UTC |
c362254 | Forrest Tanaka | 16 July 2016, 06:00:22 UTC | Update setuptools version | 16 July 2016, 06:00:22 UTC |
52e1630 | Idan Gabdank | 15 July 2016, 18:15:43 UTC | adding internal_tags to concrete classes | 15 July 2016, 18:15:43 UTC |
75c9d6e | Idan Gabdank | 15 July 2016, 18:00:42 UTC | Merge branch 'master' into 4216-excluding-dream | 15 July 2016, 18:00:42 UTC |
879415f | Ben Hitz | 14 July 2016, 18:06:13 UTC | Merge pull request #1435 from ENCODE-DCC/4216-excluding-dream 4216 excluding dream | 14 July 2016, 18:06:13 UTC |
ec3cfc2 | Ben Hitz | 14 July 2016, 18:05:57 UTC | Merge pull request #1434 from ENCODE-DCC/4270-butlr-files Update to take btr files | 14 July 2016, 18:05:57 UTC |
3897c2e | Forrest Tanaka | 14 July 2016, 01:49:15 UTC | Merge branch 'master' of https://github.com/ENCODE-DCC/encoded into 4216-excluding-dream | 14 July 2016, 01:49:15 UTC |
22413d9 | Forrest Tanaka | 14 July 2016, 01:49:06 UTC | Change tags to internal_tags Also name change on graphic file because of enum change in internal_tags for entex. | 14 July 2016, 01:49:06 UTC |
5117ce1 | Ben Hitz | 14 July 2016, 01:00:49 UTC | Merge pull request #1433 from ENCODE-DCC/4263-bdsc-dbxref Add linkout for BDSC dbxrefs | 14 July 2016, 01:00:49 UTC |
56432bd | estherc | 13 July 2016, 22:54:05 UTC | Update to take btr files | 13 July 2016, 22:54:05 UTC |
57731f0 | Idan Gabdank | 13 July 2016, 22:46:15 UTC | renamed cues into internal_tags | 13 July 2016, 22:46:15 UTC |
0f9b420 | estherc | 13 July 2016, 22:42:46 UTC | Add linkout for BDSC dbxrefs | 13 July 2016, 22:42:46 UTC |
4871e5b | Forrest Tanaka | 13 July 2016, 15:43:08 UTC | Replace encodeURIComponent Now use one defined in globals.js that calls the original encodeURIComponent and in addition encodes parentheses. | 13 July 2016, 15:43:08 UTC |
a8ccfab | Idan Gabdank | 12 July 2016, 20:10:43 UTC | changes GTEx into ENTEx in insert | 12 July 2016, 20:10:43 UTC |
c735e01 | Idan Gabdank | 12 July 2016, 19:14:54 UTC | fixed inserts, and audits and test to have 'cues' instead of 'tags' | 12 July 2016, 19:14:54 UTC |
34c5d99 | Idan Gabdank | 12 July 2016, 19:11:22 UTC | Merge branch 'master' into 4216-excluding-dream | 12 July 2016, 19:11:22 UTC |
fdc1551 | Ben Hitz | 12 July 2016, 17:36:10 UTC | Merge pull request #1432 from ENCODE-DCC/4159-fileindexer-status 4159 fileindexer status | 12 July 2016, 17:36:10 UTC |
740ce42 | Ben Hitz | 12 July 2016, 15:31:26 UTC | Merge pull request #1431 from ENCODE-DCC/4252-tech-reps 4252 tech reps | 12 July 2016, 15:31:26 UTC |
7c3d4e7 | Ben Hitz | 12 July 2016, 15:30:30 UTC | Merge pull request #1430 from ENCODE-DCC/4200-fix fixed the derived_from audit | 12 July 2016, 15:30:30 UTC |
91f8040 | Ben Hitz | 12 July 2016, 15:30:06 UTC | Merge pull request #1429 from ENCODE-DCC/4194-fix 4194 fix | 12 July 2016, 15:30:06 UTC |
7f0fb52 | Idan Gabdank | 12 July 2016, 00:17:52 UTC | changed tags to cues boosted the cues in dataset, bisample and donor | 12 July 2016, 00:17:52 UTC |
d2fa403 | Idan Gabdank | 12 July 2016, 00:11:50 UTC | Merge branch 'master' into 4216-excluding-dream | 12 July 2016, 00:11:50 UTC |
7fa32b5 | Idan Gabdank | 12 July 2016, 00:02:37 UTC | Merge branch 'master' into 4252-tech-reps | 12 July 2016, 00:02:37 UTC |
14eeecb | Idan Gabdank | 11 July 2016, 19:06:51 UTC | fixed the derived_from audit | 11 July 2016, 19:06:51 UTC |
5f2cbf8 | Idan Gabdank | 11 July 2016, 18:39:58 UTC | Merge branch 'master' into 4194-fix | 11 July 2016, 18:39:58 UTC |
5adc255 | Ben Hitz | 09 July 2016, 18:55:24 UTC | Merge pull request #1428 from ENCODE-DCC/4205-travis-for-slack 4205 travis for slack | 09 July 2016, 18:55:24 UTC |
04f5d6b | Ben Hitz | 09 July 2016, 18:54:25 UTC | Merge pull request #1425 from ENCODE-DCC/4257-biosample-audits 4257 biosample audits | 09 July 2016, 18:54:25 UTC |
ec63beb | Idan Gabdank | 08 July 2016, 23:04:30 UTC | removing extra spaces after links to objects in audit messages generated by Forrest | 08 July 2016, 23:04:30 UTC |
155d830 | Idan Gabdank | 08 July 2016, 22:53:25 UTC | forcing the tags in datasets/biosamples/donors to be unique, preventing addition of the same tag multiple times changing the EN-Tex tag to be GTEx | 08 July 2016, 22:53:25 UTC |
5eee0aa | Idan Gabdank | 08 July 2016, 22:43:03 UTC | Merge branch 'master' into 4216-excluding-dream | 08 July 2016, 22:43:03 UTC |
129bc66 | Idan Gabdank | 08 July 2016, 20:52:31 UTC | Merge branch 'master' into 4252-tech-reps | 08 July 2016, 20:52:31 UTC |
0c7628a | Idan Gabdank | 08 July 2016, 20:52:29 UTC | added missing update step of file from 7 to 8 | 08 July 2016, 20:52:29 UTC |
d425faf | Chris | 08 July 2016, 20:13:57 UTC | Merge branch '4205-travis-for-slack' of https://github.com/ENCODE-DCC/encoded into 4205-travis-for-slack correcting conflicting issues for merge | 08 July 2016, 20:13:57 UTC |
48d0a91 | Chris | 08 July 2016, 18:36:30 UTC | re-edited yml file for theproper key | 08 July 2016, 20:13:32 UTC |
0f66441 | Chris | 08 July 2016, 18:34:17 UTC | fixing merge | 08 July 2016, 20:13:32 UTC |
a43ae50 | Chris | 08 July 2016, 18:26:01 UTC | fixing merge | 08 July 2016, 20:13:32 UTC |
3aa2a2e | Chris | 08 July 2016, 18:24:01 UTC | merging issues | 08 July 2016, 20:13:32 UTC |