| 18a7ea5 | falexwolf | 25 July 2017, 16:01:06 UTC | updated travis | 25 July 2017, 16:01:06 UTC |
| 4c930da | falexwolf | 25 July 2017, 15:47:27 UTC | clearer installation instruction | 25 July 2017, 15:47:27 UTC |
| cf8d51a | falexwolf | 25 July 2017, 13:02:19 UTC | better importing in setup.py | 25 July 2017, 13:02:19 UTC |
| 9c457fe | falexwolf | 25 July 2017, 12:54:10 UTC | issue an error when numpy is not present | 25 July 2017, 12:54:10 UTC |
| d9a9840 | falexwolf | 25 July 2017, 12:44:04 UTC | setup.py manages requirements correctly | 25 July 2017, 12:44:04 UTC |
| 8533269 | falexwolf | 25 July 2017, 11:46:11 UTC | updated reference | 25 July 2017, 11:46:11 UTC |
| 9213f32 | falexwolf | 24 July 2017, 15:38:12 UTC | removed redundancy in readme | 24 July 2017, 15:38:12 UTC |
| 5624f7d | falexwolf | 24 July 2017, 15:29:07 UTC | updated summary in readme | 24 July 2017, 15:29:07 UTC |
| 3b8ae4f | falexwolf | 24 July 2017, 15:21:02 UTC | added GitHub link to Readme | 24 July 2017, 15:21:02 UTC |
| f49c4da | falexwolf | 24 July 2017, 14:11:32 UTC | fixed broken links | 24 July 2017, 14:11:32 UTC |
| df15f32 | falexwolf | 24 July 2017, 14:06:40 UTC | simpler description in readme | 24 July 2017, 14:06:40 UTC |
| 14f818e | falexwolf | 24 July 2017, 14:02:03 UTC | corrected absolute links | 24 July 2017, 14:02:03 UTC |
| 6415e80 | falexwolf | 24 July 2017, 13:34:54 UTC | added PyPI info to readme | 24 July 2017, 13:59:02 UTC |
| c8c2bba | Philipp A | 24 July 2017, 12:46:36 UTC | made links absolute | 24 July 2017, 12:46:36 UTC |
| a2bd6e1 | Philipp A | 24 July 2017, 12:26:27 UTC | try rst2html.py | 24 July 2017, 12:26:27 UTC |
| 75c2f34 | Philipp A | 24 July 2017, 11:46:45 UTC | fixed checks | 24 July 2017, 11:56:05 UTC |
| 13b6c8e | Philipp A | 24 July 2017, 11:39:21 UTC | fixed readme again | 24 July 2017, 11:39:21 UTC |
| f4a4b65 | Philipp A | 24 July 2017, 11:27:54 UTC | added docs to check | 24 July 2017, 11:27:54 UTC |
| 51cafb8 | Philipp A | 24 July 2017, 10:26:30 UTC | fixed a few RST problems | 24 July 2017, 10:29:15 UTC |
| d49b02c | falexwolf | 24 July 2017, 09:02:03 UTC | recompute_graph option in aga | 24 July 2017, 09:02:03 UTC |
| 6de69a3 | falexwolf | 24 July 2017, 09:01:52 UTC | raise warning when root cell does not match | 24 July 2017, 09:01:52 UTC |
| d11e70e | falexwolf | 24 July 2017, 08:31:04 UTC | can now assign pandas series to ann_data | 24 July 2017, 08:31:04 UTC |
| d85b3cd | falexwolf | 24 July 2017, 01:10:16 UTC | updated setup to include correct license | 24 July 2017, 01:10:16 UTC |
| a07205c | falexwolf | 24 July 2017, 00:56:54 UTC | remove unnecessary brackets | 24 July 2017, 00:56:54 UTC |
| 5e62115 | falexwolf | 24 July 2017, 00:55:41 UTC | fix another broken link in readme | 24 July 2017, 00:55:41 UTC |
| 573a71f | falexwolf | 24 July 2017, 00:52:49 UTC | fix broken link in readme | 24 July 2017, 00:52:49 UTC |
| 3a85862 | falexwolf | 24 July 2017, 00:42:00 UTC | fixed readme | 24 July 2017, 00:42:00 UTC |
| 7774eb5 | falexwolf | 24 July 2017, 00:26:07 UTC | updated readme | 24 July 2017, 00:26:07 UTC |
| 9f21edb | falexwolf | 23 July 2017, 23:41:22 UTC | updated 3d plot | 23 July 2017, 23:41:22 UTC |
| f2fd1f6 | falexwolf | 23 July 2017, 23:15:54 UTC | added option to subsample | 23 July 2017, 23:15:54 UTC |
| a6c89e9 | falexwolf | 23 July 2017, 22:26:04 UTC | cleaning up for version 0.2 | 23 July 2017, 22:26:04 UTC |
| 2c509d7 | falexwolf | 23 July 2017, 09:17:26 UTC | cleaned up dpt | 23 July 2017, 09:17:26 UTC |
| efe3353 | falexwolf | 22 July 2017, 10:44:24 UTC | fixing bugs | 22 July 2017, 10:44:24 UTC |
| 5ce8928 | falexwolf | 22 July 2017, 08:22:54 UTC | deleted compat module | 22 July 2017, 08:22:54 UTC |
| 3a61aa5 | falexwolf | 22 July 2017, 08:22:12 UTC | renamed plotting modules | 22 July 2017, 08:22:12 UTC |
| 23c3714 | falexwolf | 22 July 2017, 08:02:15 UTC | cleaned up plotting | 22 July 2017, 08:02:15 UTC |
| 9240327 | falexwolf | 22 July 2017, 08:01:47 UTC | updated main and settings to cache parameter | 22 July 2017, 08:01:47 UTC |
| 9844021 | falexwolf | 22 July 2017, 08:01:20 UTC | cleaned up readwrite, added cache parameter | 22 July 2017, 08:01:20 UTC |
| dcb8d5e | falexwolf | 21 July 2017, 17:30:44 UTC | rank_genes_groups yields meaningful results | 21 July 2017, 17:30:44 UTC |
| 627188c | falexwolf | 21 July 2017, 11:45:11 UTC | renamed diffrank to rank_genes_groups | 21 July 2017, 11:45:11 UTC |
| cd93c54 | falexwolf | 21 July 2017, 11:43:44 UTC | cleaned up toolkit | 21 July 2017, 11:43:44 UTC |
| abf1f42 | Philipp A | 20 July 2017, 15:11:38 UTC | removed fail mark from passing test | 20 July 2017, 15:11:38 UTC |
| 310deb9 | Philipp A | 20 July 2017, 14:31:04 UTC | fixed visualization link | 20 July 2017, 14:31:04 UTC |
| e5d94b5 | Philipp A | 20 July 2017, 14:10:09 UTC | converted -- → – | 20 July 2017, 14:10:09 UTC |
| 3c2d5d3 | Philipp A | 20 July 2017, 14:08:54 UTC | converted README to rST for PyPI, added many references | 20 July 2017, 14:08:54 UTC |
| a8b9093 | Philipp A | 18 July 2017, 13:52:15 UTC | Python 2 support is broken | 20 July 2017, 12:26:29 UTC |
| 173a0e9 | Philipp A | 18 July 2017, 13:48:53 UTC | Added classifiers | 20 July 2017, 12:26:29 UTC |
| 5102091 | falexwolf | 19 July 2017, 15:45:19 UTC | cleaned up several issues | 19 July 2017, 15:45:19 UTC |
| ccbe0c5 | falexwolf | 18 July 2017, 12:16:28 UTC | added a further continuity constraint | 18 July 2017, 12:16:28 UTC |
| 37d0b76 | falexwolf | 17 July 2017, 23:24:35 UTC | fixed bug in aga and plotting | 17 July 2017, 23:24:35 UTC |
| 2236065 | falexwolf | 17 July 2017, 21:29:32 UTC | Seurat Tutorial now works fully | 17 July 2017, 21:29:32 UTC |
| 75fe9e4 | falexwolf | 17 July 2017, 17:05:31 UTC | diffrank now tests single groups | 17 July 2017, 17:05:31 UTC |
| 0909af0 | falexwolf | 17 July 2017, 14:31:26 UTC | better scaling in pl.aga_graph | 17 July 2017, 14:31:26 UTC |
| 6a4309c | falexwolf | 17 July 2017, 12:39:22 UTC | cleaned up simulated data | 17 July 2017, 12:39:22 UTC |
| 3f7b172 | falexwolf | 16 July 2017, 22:31:02 UTC | allow plotting full attachedness | 16 July 2017, 22:31:02 UTC |
| 479e17d | falexwolf | 16 July 2017, 16:55:37 UTC | tidied up blood data | 16 July 2017, 16:55:37 UTC |
| ed4e772 | falexwolf | 16 July 2017, 14:37:23 UTC | saving planaria | 16 July 2017, 14:37:23 UTC |
| dd77374 | falexwolf | 16 July 2017, 14:37:03 UTC | updated readme | 16 July 2017, 14:37:03 UTC |
| 0c568cd | falexwolf | 15 July 2017, 15:39:03 UTC | save nestorowa16 analysis | 15 July 2017, 15:39:03 UTC |
| 7d33504 | falexwolf | 15 July 2017, 12:53:54 UTC | aga tree plots including confidence | 15 July 2017, 12:53:54 UTC |
| 34f6571 | falexwolf | 14 July 2017, 14:54:05 UTC | tidied up draw_graph | 14 July 2017, 14:54:05 UTC |
| d787e73 | falexwolf | 14 July 2017, 13:49:07 UTC | reproducing old planaria analysis | 14 July 2017, 13:49:07 UTC |
| 11df6cd | falexwolf | 14 July 2017, 10:07:32 UTC | added various graph drawing algorithms for visualization | 14 July 2017, 10:07:32 UTC |
| f09a623 | falexwolf | 12 July 2017, 12:29:25 UTC | multi-panel plotting of aga_tree | 12 July 2017, 12:29:25 UTC |
| 62689b5 | falexwolf | 12 July 2017, 09:59:59 UTC | tidy up logging, improve aga_timeseries plot | 12 July 2017, 09:59:59 UTC |
| 47b95a9 | falexwolf | 12 July 2017, 02:09:40 UTC | added timeseries plot for aga | 12 July 2017, 02:09:40 UTC |
| 24fa810 | falexwolf | 12 July 2017, 00:25:37 UTC | added overview plotting for aga | 12 July 2017, 00:25:37 UTC |
| 44af6a6 | falexwolf | 11 July 2017, 22:10:50 UTC | updated aga and readwrite | 11 July 2017, 22:10:50 UTC |
| 3956dff | falexwolf | 11 July 2017, 22:10:22 UTC | added the data of two examples as text files | 11 July 2017, 22:10:22 UTC |
| 4577d71 | falexwolf | 11 July 2017, 22:09:00 UTC | updated structure of examples module | 11 July 2017, 22:09:00 UTC |
| 2b28c63 | falexwolf | 11 July 2017, 22:08:37 UTC | updated sim tool | 11 July 2017, 22:08:37 UTC |
| 852c0eb | falexwolf | 11 July 2017, 21:08:31 UTC | graph contraction for aga | 11 July 2017, 21:08:31 UTC |
| dbbf22b | falexwolf | 11 July 2017, 15:33:27 UTC | restructured aga and louvain | 11 July 2017, 15:33:27 UTC |
| f87686a | falexwolf | 11 July 2017, 11:53:58 UTC | added louvain clustering 2 | 11 July 2017, 11:53:58 UTC |
| 4e26e37 | falexwolf | 11 July 2017, 11:53:23 UTC | added louvain clustering | 11 July 2017, 11:53:23 UTC |
| 238283e | falexwolf | 11 July 2017, 11:08:46 UTC | added cache_warning, removed 'as_strings' option | 11 July 2017, 11:08:46 UTC |
| d770405 | falexwolf | 11 July 2017, 07:01:27 UTC | renamed ega to aga, dropped abbreviation sett' | 11 July 2017, 07:01:27 UTC |
| be13e07 | falexwolf | 10 July 2017, 16:16:00 UTC | do not write dpt or ega order to adata | 10 July 2017, 16:16:00 UTC |
| fa8dc8d | falexwolf | 10 July 2017, 16:15:44 UTC | reading of text files no throws error for ill-formatting | 10 July 2017, 16:15:44 UTC |
| 8aa6512 | falexwolf | 10 July 2017, 11:29:29 UTC | ega: mireya's data works | 10 July 2017, 11:29:29 UTC |
| 8d32697 | falexwolf | 10 July 2017, 09:18:23 UTC | ega: using in addition the median distance | 10 July 2017, 09:18:23 UTC |
| 47f777a | falexwolf | 10 July 2017, 09:03:44 UTC | ega: precomputed clusters full random walk distance | 10 July 2017, 09:03:44 UTC |
| 27bc3b1 | falexwolf | 07 July 2017, 13:36:06 UTC | ega: now using surface instead of volume to suppress connections to large clusters | 07 July 2017, 13:36:06 UTC |
| 8b1c358 | falexwolf | 07 July 2017, 11:46:06 UTC | ega: account for euclidian distance and large partitions in attachedness | 07 July 2017, 11:46:06 UTC |
| f6619ca | falexwolf | 07 July 2017, 09:46:43 UTC | towards star split in ega, binary split still works | 07 July 2017, 09:46:43 UTC |
| 9958a56 | falexwolf | 06 July 2017, 10:03:09 UTC | treat number of components in diffusion maps consistently | 06 July 2017, 10:03:09 UTC |
| 81e1b12 | falexwolf | 06 July 2017, 08:51:37 UTC | ega does not need to recompute diffmap any longer | 06 July 2017, 08:51:37 UTC |
| e32cb8e | falexwolf | 06 July 2017, 08:45:26 UTC | write Ktilde to disk by default | 06 July 2017, 08:45:26 UTC |
| 3a273d3 | falexwolf | 06 July 2017, 08:31:16 UTC | reproduce 0.1+70.g165e893 using correct initialization | 06 July 2017, 08:31:16 UTC |
| 7a682d4 | falexwolf | 06 July 2017, 08:02:08 UTC | new splitting criterion in ega | 06 July 2017, 08:02:08 UTC |
| 8cf7801 | falexwolf | 05 July 2017, 13:32:34 UTC | can now plot legend labels on data 2 | 05 July 2017, 13:32:34 UTC |
| f4ac174 | falexwolf | 05 July 2017, 13:32:10 UTC | can now plot legend labels on data | 05 July 2017, 13:32:10 UTC |
| 2cea834 | falexwolf | 04 July 2017, 11:34:31 UTC | fixed command line interface | 04 July 2017, 11:34:31 UTC |
| fa05ef0 | falexwolf | 04 July 2017, 09:59:28 UTC | slightly modified kendall tau criterium for cases, where everything is correlated | 04 July 2017, 09:59:28 UTC |
| 92df32d | falexwolf | 04 July 2017, 06:57:26 UTC | reorganized dpt and ega plotting | 04 July 2017, 06:57:26 UTC |
| ba34ef3 | falexwolf | 04 July 2017, 06:47:14 UTC | fully restored previous dpt version | 04 July 2017, 06:47:14 UTC |
| 1e85c08 | falexwolf | 03 July 2017, 15:35:47 UTC | avoid subtracting boolean arrays | 03 July 2017, 15:35:47 UTC |
| 28a240c | falexwolf | 03 July 2017, 11:58:59 UTC | changed default flavor ega | 03 July 2017, 11:58:59 UTC |
| f2380d8 | falexwolf | 03 July 2017, 11:57:50 UTC | updated legends in scatter | 03 July 2017, 11:57:50 UTC |
| cc5a6dc | falexwolf | 03 July 2017, 10:13:03 UTC | output warnings if not finding the delimiter | 03 July 2017, 10:13:03 UTC |
