| 0dfd9bb | oesteban | 24 July 2017, 16:09:26 UTC | remove sample with nan on subject 50818 for qi_1 (opened #598, #599) | 24 July 2017, 16:09:26 UTC |
| 5e824c9 | oesteban | 24 July 2017, 03:47:41 UTC | Merge branch 'enh/UpdateIQMs' | 24 July 2017, 03:47:41 UTC |
| 14127db | oesteban | 24 July 2017, 03:47:14 UTC | fix data path | 24 July 2017, 03:47:14 UTC |
| dbdb5cc | Oscar Esteban | 24 July 2017, 03:20:22 UTC | Merge pull request #597 from oesteban/enh/UpdateIQMs [ENH] Update IQMs | 24 July 2017, 03:20:22 UTC |
| 4dc080d | oesteban | 24 July 2017, 03:17:08 UTC | update features close #590 | 24 July 2017, 03:17:08 UTC |
| 649ab41 | oesteban | 24 July 2017, 03:12:02 UTC | rename IQM files | 24 July 2017, 03:12:02 UTC |
| f245133 | Oscar Esteban | 22 July 2017, 02:55:13 UTC | Merge pull request #596 from oesteban/fix/ANTs-nthreads [ENH] Change default --ants-nthreads | 22 July 2017, 02:55:13 UTC |
| 0eb11da | oesteban | 22 July 2017, 01:07:44 UTC | test new default on circle, update CHANGES | 22 July 2017, 01:07:44 UTC |
| 82af6f4 | oesteban | 22 July 2017, 01:02:24 UTC | [ENH] Change default --ants-nthreads Using parallelism with ANTs causes numerical instability on the calculated measures. The most sensitive metrics to this problem are the kurtosis calculations on the intensities of regions and qi_2. | 22 July 2017, 01:02:24 UTC |
| 8350579 | oesteban | 21 July 2017, 17:12:21 UTC | calculate correlation of measures when differences are found | 21 July 2017, 17:12:21 UTC |
| 611d245 | oesteban | 21 July 2017, 05:28:24 UTC | check iqms with a tolerance | 21 July 2017, 05:28:24 UTC |
| eff3197 | oesteban | 20 July 2017, 21:47:37 UTC | [docs_only] add openneuro, improve custom classifiers | 20 July 2017, 21:47:37 UTC |
| 902f94c | oesteban | 20 July 2017, 19:02:44 UTC | fix position of poster (docs_only) | 20 July 2017, 19:02:44 UTC |
| 57e02f0 | oesteban | 20 July 2017, 18:58:35 UTC | update documentation (docs_only) | 20 July 2017, 18:58:35 UTC |
| 099581a | oesteban | 20 July 2017, 18:58:03 UTC | Merge remote-tracking branch 'upstream/master' into fix/445 | 20 July 2017, 18:58:03 UTC |
| fde0908 | oesteban | 20 July 2017, 18:36:54 UTC | updating documentation (docs_only) | 20 July 2017, 18:36:54 UTC |
| 6f2c0e8 | oesteban | 20 July 2017, 18:36:29 UTC | updating documentation (docs_only) | 20 July 2017, 18:36:29 UTC |
| 7670e97 | Oscar Esteban | 20 July 2017, 02:37:01 UTC | Merge pull request #592 from oesteban/fix/445 [ENH] Labels in group reports link to docs | 20 July 2017, 02:37:01 UTC |
| 18a9eca | Oscar Esteban | 20 July 2017, 02:18:39 UTC | (docs_only) fix lowercase in t1w links | 20 July 2017, 02:18:39 UTC |
| 54fb046 | Oscar Esteban | 20 July 2017, 02:15:21 UTC | (docs_only) add dummy definition to bold iqms | 20 July 2017, 02:15:21 UTC |
| 4cb4756 | oesteban | 19 July 2017, 22:19:06 UTC | enable links for bold group reports | 19 July 2017, 22:19:06 UTC |
| 905d09c | oesteban | 19 July 2017, 22:07:53 UTC | Merge branch 'master' into fix/445 | 19 July 2017, 22:07:53 UTC |
| c062490 | Oscar Esteban | 19 July 2017, 21:41:30 UTC | Merge pull request #593 from oesteban/fix/313 [ENH] Clip outliers in FD and SPIKES group plots | 19 July 2017, 21:41:30 UTC |
| 6192ffc | oesteban | 19 July 2017, 17:09:46 UTC | [ENH] Clip outliers in FD and SPIKES group plots This will allow to see the distribution while removing outliers that force the range shown in the scatterplot. Fixes #445 | 19 July 2017, 17:09:46 UTC |
| 0d6d658 | oesteban | 19 July 2017, 16:43:23 UTC | [ENH] Clip outliers in FD and SPIKES group plots This will allow to see the distribution while removing outliers that force the range shown in the scatterplot. Fixes #445 | 19 July 2017, 16:43:23 UTC |
| 8fcb736 | oesteban | 19 July 2017, 16:23:21 UTC | remove leftover trace | 19 July 2017, 16:23:21 UTC |
| 1dc6204 | oesteban | 19 July 2017, 16:22:50 UTC | [ENH] Labels in group reports link to docs Closes #445 This early version works only for t1w images | 19 July 2017, 16:22:50 UTC |
| 7739c16 | Oscar Esteban | 19 July 2017, 07:17:04 UTC | Merge pull request #586 from oesteban/enh/451 [ENH] Add new classifier to CI testing | 19 July 2017, 07:17:04 UTC |
| b626ab8 | Oscar Esteban | 19 July 2017, 05:11:26 UTC | fix classifier path | 19 July 2017, 05:11:26 UTC |
| b6bd845 | Oscar Esteban | 19 July 2017, 02:03:14 UTC | increase timeout | 19 July 2017, 02:03:14 UTC |
| 443e054 | Oscar Esteban | 18 July 2017, 23:38:56 UTC | Merge pull request #591 from oesteban/fix/587 [ENH] Pin niworkflows to stable release (docs_only) | 18 July 2017, 23:38:56 UTC |
| d3f8e77 | oesteban | 18 July 2017, 21:37:06 UTC | [ENH] Pin niworkflows to stable release (docs_only) Closes #587 | 18 July 2017, 21:37:06 UTC |
| 2cc6c3c | oesteban | 18 July 2017, 19:23:29 UTC | fix prediction (`-X` flag) | 18 July 2017, 19:23:29 UTC |
| f9485cb | oesteban | 18 July 2017, 19:00:04 UTC | add test on classifier | 18 July 2017, 19:00:04 UTC |
| 935d573 | oesteban | 18 July 2017, 18:05:32 UTC | fit classifier | 18 July 2017, 18:05:32 UTC |
| 68c02e0 | oesteban | 18 July 2017, 18:03:27 UTC | add comments, restructure | 18 July 2017, 18:03:27 UTC |
| 543549f | oesteban | 18 July 2017, 18:00:12 UTC | read preprocessing combinations from parameters file | 18 July 2017, 18:00:12 UTC |
| bde1668 | oesteban | 18 July 2017, 17:07:33 UTC | improving loading parameters | 18 July 2017, 17:07:33 UTC |
| 9d8cedc | Oscar Esteban | 18 July 2017, 17:00:04 UTC | Merge pull request #588 from oesteban/fix/579 [FIX] OMP_NUM_THREADS not defined in Docker image | 18 July 2017, 17:00:04 UTC |
| 139f30c | Oscar Esteban | 18 July 2017, 02:53:45 UTC | [FIX] OMP_NUM_THREADS not defined in Docker image Fixes #579 | 18 July 2017, 02:53:45 UTC |
| 98c8ce3 | Oscar Esteban | 18 July 2017, 01:40:21 UTC | use new pickled classifiers | 18 July 2017, 01:40:21 UTC |
| a89c13a | oesteban | 17 July 2017, 22:17:46 UTC | fix `-X` in `mriqc_clf` | 17 July 2017, 22:17:46 UTC |
| d149ad4 | oesteban | 17 July 2017, 18:32:54 UTC | [ENH] Add new classifier to CI testing Closes #451 | 17 July 2017, 18:32:54 UTC |
| 7b77625 | oesteban | 17 July 2017, 16:39:03 UTC | [FIX] Hard-code version before deploying to PyPI Fixes #585 | 17 July 2017, 16:39:03 UTC |
| 2d10bb9 | Oscar Esteban | 17 July 2017, 01:40:29 UTC | Merge pull request #584 from oesteban/fix/581 [FIX] Remove versions of afni and fsl in Dockerfile | 17 July 2017, 01:40:29 UTC |
| b65b6a8 | Oscar Esteban | 16 July 2017, 02:44:21 UTC | [FIX] Remove versions of afni and fsl in Dockerfile Since neurodebian does not maintain old packages, when they are updated, the build is broken. Fixes #581 | 16 July 2017, 02:44:21 UTC |
| dc9e1e3 | Oscar Esteban | 11 July 2017, 20:23:58 UTC | Merge pull request #583 from poldracklab/chrisfilo-patch-1 [RTM] run ldconfig | 11 July 2017, 20:23:58 UTC |
| 182114a | Chris Filo Gorgolewski | 10 July 2017, 20:57:14 UTC | run ldconfig | 10 July 2017, 20:57:14 UTC |
| d494c16 | Oscar Esteban | 08 July 2017, 02:28:04 UTC | Merge pull request #582 from oesteban/enh/final-fixes-clf [FIX] Test DS030 with --load-classifier + some minor enhancements | 08 July 2017, 02:28:04 UTC |
| bd88f46 | oesteban | 07 July 2017, 20:24:10 UTC | fix test evaluation when using --load-classifier | 07 July 2017, 20:24:10 UTC |
| 962e531 | oesteban | 07 July 2017, 20:23:40 UTC | fix inter-rater variability plot | 07 July 2017, 20:23:40 UTC |
| e78254d | oesteban | 07 July 2017, 20:22:59 UTC | add noghost file | 07 July 2017, 20:22:59 UTC |
| 8831278 | Oscar Esteban | 06 July 2017, 22:54:04 UTC | Merge pull request #580 from oesteban/enh/inter-rater-variability [ENH] Sort out notebooks and inter-rater variability | 06 July 2017, 22:54:04 UTC |
| 0a5a775 | oesteban | 06 July 2017, 20:47:07 UTC | add DS030 ghosts table | 06 July 2017, 20:47:07 UTC |
| 4fd7a5f | oesteban | 06 July 2017, 20:46:43 UTC | update notebooks | 06 July 2017, 20:46:43 UTC |
| f4a00f3 | oesteban | 06 July 2017, 16:33:37 UTC | update notebooks | 06 July 2017, 16:33:37 UTC |
| 89cfc8b | oesteban | 05 July 2017, 08:02:55 UTC | update notebooks | 05 July 2017, 08:02:55 UTC |
| 38051b6 | oesteban | 05 July 2017, 08:01:21 UTC | change notebook name | 05 July 2017, 08:01:21 UTC |
| d3143a6 | oesteban | 05 July 2017, 08:00:20 UTC | update MRIQC notebook | 05 July 2017, 08:00:20 UTC |
| b477062 | oesteban | 05 July 2017, 07:59:25 UTC | new confusion matrix plot | 05 July 2017, 07:59:25 UTC |
| d62282a | oesteban | 05 July 2017, 07:58:40 UTC | add new classifiers | 05 July 2017, 07:58:40 UTC |
| 7137c61 | oesteban | 04 July 2017, 17:16:07 UTC | Merge remote-tracking branch 'origin/add_ds030_results' into enh/inter-rater-variability | 04 July 2017, 17:16:07 UTC |
| 834559d | Oscar Esteban | 04 July 2017, 17:14:54 UTC | [ENH] Add DS030 predictions table [skip ci] | 04 July 2017, 17:14:54 UTC |
| c501974 | Oscar Esteban | 04 July 2017, 00:06:47 UTC | Update README.rst [docs_only] Add citation info. | 04 July 2017, 00:06:47 UTC |
| 79e9f84 | oesteban | 03 July 2017, 21:47:31 UTC | Merge branch 'master' into enh/inter-rater-variability | 03 July 2017, 21:47:31 UTC |
| ee2e2c2 | Oscar Esteban | 03 July 2017, 20:52:48 UTC | Merge pull request #577 from oesteban/enh/experiment-1 [ENH] Nested cross-validation of all models + permutation test | 03 July 2017, 20:52:48 UTC |
| 4095fe9 | oesteban | 03 July 2017, 18:49:48 UTC | improve logging of cross-validated model | 03 July 2017, 18:49:48 UTC |
| 9f69d76 | oesteban | 03 July 2017, 18:18:37 UTC | add optional permutation test to evaluation | 03 July 2017, 18:18:37 UTC |
| c5c472d | oesteban | 01 July 2017, 22:43:17 UTC | add permutation test | 01 July 2017, 22:43:17 UTC |
| 41f64bc | oesteban | 01 July 2017, 19:47:17 UTC | update batch plots generation | 01 July 2017, 19:47:17 UTC |
| dbabacd | Oscar Esteban | 25 June 2017, 21:34:01 UTC | [skip ci] add .DS_Store to .gitignore | 25 June 2017, 21:34:01 UTC |
| 4b7a493 | Oscar Esteban | 25 June 2017, 18:14:51 UTC | small fixes | 25 June 2017, 18:14:51 UTC |
| fb3e8d6 | oesteban | 24 June 2017, 18:29:29 UTC | Merge branch 'master' into enh/experiment-1 | 24 June 2017, 18:29:29 UTC |
| 48c25b8 | Oscar Esteban | 24 June 2017, 18:28:51 UTC | Merge pull request #578 from oesteban/enh/ds030-sits [ENH] Clean-up labels file of DS030 | 24 June 2017, 18:28:51 UTC |
| 431732a | oesteban | 24 June 2017, 18:25:01 UTC | [skip ci] integer labels | 24 June 2017, 18:25:01 UTC |
| e47a553 | oesteban | 24 June 2017, 18:21:48 UTC | [ENH] Clean-up labels file of DS030 - Remove subjects without T1w image - Add scanning site labels | 24 June 2017, 18:21:48 UTC |
| 1339d99 | oesteban | 23 June 2017, 23:06:22 UTC | minor fixes | 23 June 2017, 23:06:22 UTC |
| 4059e44 | oesteban | 23 June 2017, 22:52:22 UTC | [ENH] Nested cross-validation of all models Implements experiment 1, to compare RFC, XGB, and SVC | 23 June 2017, 22:52:22 UTC |
| 0aa9284 | Oscar Esteban | 23 June 2017, 21:36:23 UTC | Merge pull request #576 from oesteban/enh/revamp-nested-cv [ENH] Improvements in nested/nonnested cross validation | 23 June 2017, 21:36:23 UTC |
| 860fe80 | oesteban | 23 June 2017, 18:28:50 UTC | allow K-Fold in outer cv loop, update documentation with experiment 0 | 23 June 2017, 18:28:50 UTC |
| 1ba709a | Oscar Esteban | 23 June 2017, 17:59:37 UTC | Merge pull request #575 from oesteban/fix/564 [FIX] Do not write provenance in group CSV | 23 June 2017, 17:59:37 UTC |
| ae70b07 | oesteban | 23 June 2017, 16:41:57 UTC | Merge remote-tracking branch 'upstream/master' into enh/revamp-nested-cv | 23 June 2017, 16:41:57 UTC |
| 86a3d48 | Oscar Esteban | 23 June 2017, 16:41:37 UTC | Merge pull request #574 from oesteban/docs/fixes-0.9.7 [ENH] Documentation fixes | 23 June 2017, 16:41:37 UTC |
| a26aece | oesteban | 23 June 2017, 15:52:56 UTC | [FIX] Do not write provenance in group CSV Fixes #564 | 23 June 2017, 15:52:56 UTC |
| 973287a | oesteban | 23 June 2017, 15:41:50 UTC | [docs_only] remove unused files | 23 June 2017, 15:41:50 UTC |
| 262c522 | oesteban | 23 June 2017, 15:38:05 UTC | [ENH] Documentation fixes [docs_only] Update comment on docker (close #559) | 23 June 2017, 15:38:05 UTC |
| 6a2f8a9 | oesteban | 23 June 2017, 15:26:53 UTC | [docs_only] update functional workflow plot | 23 June 2017, 15:26:53 UTC |
| 07287d7 | oesteban | 23 June 2017, 15:25:35 UTC | add new cross-validation | 23 June 2017, 15:25:35 UTC |
| d1d99eb | oesteban | 23 June 2017, 15:25:08 UTC | remove mriqc_fit and the old nested-cv | 23 June 2017, 15:25:08 UTC |
| a3c29bf | oesteban | 21 June 2017, 08:35:00 UTC | increase verbosity of nested cross validation | 21 June 2017, 08:35:00 UTC |
| e4ac5c5 | oesteban | 21 June 2017, 05:56:50 UTC | add nested cross-validation to mriqc_clf | 21 June 2017, 05:56:50 UTC |
| dbce6ba | oesteban | 21 June 2017, 05:31:39 UTC | Merge branch 'master' into enh/revamp-nested-cv | 21 June 2017, 05:31:39 UTC |
| d7cf3e2 | oesteban | 21 June 2017, 05:30:41 UTC | [build_only] Move position of apt-get update | 21 June 2017, 05:30:41 UTC |
| ed86f1a | oesteban | 21 June 2017, 05:28:07 UTC | robuster leave-one-site-out splits, playing around the randomized search | 21 June 2017, 05:28:07 UTC |
| ef62a77 | oesteban | 21 June 2017, 05:27:23 UTC | move get_groups to data module | 21 June 2017, 05:27:23 UTC |
| 9b4cc3d | oesteban | 21 June 2017, 04:15:19 UTC | fix circular import | 21 June 2017, 04:15:19 UTC |
| 22176c9 | oesteban | 21 June 2017, 04:15:04 UTC | let GridSearchCV handle the creation of splits | 21 June 2017, 04:15:04 UTC |
| 9907a9d | oesteban | 21 June 2017, 00:37:45 UTC | get rid of custom zscoring | 21 June 2017, 00:37:45 UTC |
| a59b891 | oesteban | 21 June 2017, 00:37:12 UTC | Merge remote-tracking branch 'upstream/master' | 21 June 2017, 00:37:12 UTC |
| 39c8a32 | Oscar Esteban | 20 June 2017, 21:36:17 UTC | Update Dockerfile Update fsl-core package version | 20 June 2017, 21:36:17 UTC |
