| 63779ea | John Chilton | 30 September 2016, 10:54:49 UTC | Version 16.10.2 | 30 September 2016, 10:54:49 UTC |
| 709cea8 | John Chilton | 30 September 2016, 10:52:16 UTC | Fixup setup.py. Should fix package on PyPI on next release. | 30 September 2016, 10:53:57 UTC |
| cc84654 | John Chilton | 29 September 2016, 20:47:01 UTC | Starting work on 16.10.2 | 29 September 2016, 20:47:01 UTC |
| 0664239 | John Chilton | 29 September 2016, 20:45:57 UTC | Version 16.10.1 | 29 September 2016, 20:45:57 UTC |
| 8934f43 | John Chilton | 29 September 2016, 20:45:44 UTC | Prep the next version. | 29 September 2016, 20:45:44 UTC |
| 5397072 | John Chilton | 29 September 2016, 20:28:14 UTC | Merge pull request #15 from galaxyproject/mulled Mulled support. | 29 September 2016, 20:28:14 UTC |
| 27e2375 | John Chilton | 27 September 2016, 18:18:54 UTC | Implement a Mulled ContainerResolver. By default enable search on quay.io/mulled/, but the ContainerResolver can be updated to search other namespaces on quay.io. | 29 September 2016, 20:23:11 UTC |
| 4250169 | John Chilton | 27 September 2016, 17:33:50 UTC | Refactor container discovery for tools to use a plugin framework. Using galaxy.util.plugin_config to get XML/JSON/YAML parsing and auto-discovery of plugins in the new galaxy.tools.deps.container_resolvers. Small tweaks to some existing docs. | 29 September 2016, 19:40:19 UTC |
| a552edc | John Chilton | 29 September 2016, 15:52:52 UTC | Add script to run mulled from directories of and single TSV files. This should be able to serve as the CI target for communities to be able to turn Github PRs into mulled images. | 29 September 2016, 19:40:18 UTC |
| 70f3603 | John Chilton | 29 September 2016, 04:13:57 UTC | Implement mulled-build-tool to build/publish containers for tools. | 29 September 2016, 19:40:18 UTC |
| 39bcfae | John Chilton | 29 September 2016, 17:46:53 UTC | Improved conda compat layer - rebase with mulled stuff and extract into own commit. | 29 September 2016, 19:40:18 UTC |
| 9c92a42 | John Chilton | 26 September 2016, 20:14:57 UTC | Implement library and CLI commands for mulled functionality. See also https://github.com/mulled/auto-mulled. | 29 September 2016, 19:40:18 UTC |
| b34a48a | John Chilton | 27 September 2016, 18:25:07 UTC | Merge pull request #14 from galaxyproject/update_160927 Bring in the latest Galaxy updates from dev. | 27 September 2016, 18:25:07 UTC |
| 3716586 | John Chilton | 27 September 2016, 17:37:02 UTC | Bring in the latest Galaxy updates from dev. | 27 September 2016, 17:46:25 UTC |
| 9199a33 | John Chilton | 26 September 2016, 15:12:01 UTC | Merge pull request #13 from galaxyproject/update_160926 Update to latest dev changes. | 26 September 2016, 15:12:01 UTC |
| 626929d | John Chilton | 26 September 2016, 14:07:22 UTC | Update to latest dev changes. | 26 September 2016, 14:21:19 UTC |
| af6a903 | John Chilton | 01 September 2016, 19:46:16 UTC | Merge pull request #12 from galaxyproject/import-order-linting Lint import order w/fixes. | 01 September 2016, 19:46:16 UTC |
| 263e8f9 | John Chilton | 01 September 2016, 17:48:01 UTC | Lint import order w/fixes. To the new Galaxy-standard. | 01 September 2016, 18:27:59 UTC |
| 9c167f8 | John Chilton | 31 August 2016, 16:22:48 UTC | Starting work on 16.10.1 | 31 August 2016, 16:26:27 UTC |
| bd34797 | John Chilton | 31 August 2016, 16:22:06 UTC | Version 16.10.0 | 31 August 2016, 16:26:25 UTC |
| 2daec2f | John Chilton | 31 August 2016, 16:21:17 UTC | Merge pull request #11 from galaxyproject/update_to_16.10.1 Update to 16.10.0 | 31 August 2016, 16:21:17 UTC |
| c5f0f51 | John Chilton | 31 August 2016, 15:56:29 UTC | Prepare 16.10.0. | 31 August 2016, 16:09:37 UTC |
| 3f2d0be | John Chilton | 31 August 2016, 16:09:12 UTC | Drop Python 2.6 testing. | 31 August 2016, 16:09:37 UTC |
| 55cffa3 | John Chilton | 31 August 2016, 15:54:43 UTC | Fixes to project files. | 31 August 2016, 15:54:43 UTC |
| 28758cb | John Chilton | 31 August 2016, 15:54:20 UTC | Bring in filelock refactoring to fix conda linting/tests. | 31 August 2016, 15:54:20 UTC |
| d4ac8a7 | John Chilton | 31 August 2016, 14:51:12 UTC | Fix Python 3.4 error. | 31 August 2016, 14:51:12 UTC |
| 6f6b537 | John Chilton | 31 August 2016, 14:40:07 UTC | WIP: Update to the latest galaxy libs. (16.10 just post release of 16.07). | 31 August 2016, 14:40:07 UTC |
| 3ac4994 | John Chilton | 04 August 2016, 15:09:37 UTC | Starting work on 16.7.11 | 04 August 2016, 15:09:37 UTC |
| 77f14ab | John Chilton | 04 August 2016, 15:07:52 UTC | Version 16.7.10 | 04 August 2016, 15:07:52 UTC |
| 8075714 | John Chilton | 04 August 2016, 15:06:54 UTC | Update to CWL 1.0 documentation syntax. | 04 August 2016, 15:06:54 UTC |
| 9ff97e4 | John Chilton | 14 June 2016, 02:44:33 UTC | Starting work on 16.7.10 | 14 June 2016, 02:44:33 UTC |
| a214daf | John Chilton | 14 June 2016, 02:43:26 UTC | Version 16.7.9 | 14 June 2016, 02:43:26 UTC |
| 10a1a35 | John Chilton | 14 June 2016, 02:43:11 UTC | Add HISTORY.rst content for new release. | 14 June 2016, 02:43:11 UTC |
| dd71a19 | John Chilton | 13 June 2016, 19:01:53 UTC | Update to latest Galaxy changes... | 13 June 2016, 19:01:53 UTC |
| 0d84dde | John Chilton | 13 June 2016, 18:58:44 UTC | Update CWL abstractions for gx and cwltool changes. | 13 June 2016, 18:58:44 UTC |
| b8ed220 | John Chilton | 05 June 2016, 13:41:07 UTC | Starting work on 16.7.9 | 05 June 2016, 13:41:07 UTC |
| 5b30850 | John Chilton | 05 June 2016, 13:40:19 UTC | Version 16.7.8 | 05 June 2016, 13:40:19 UTC |
| e837363 | John Chilton | 05 June 2016, 13:39:48 UTC | Update HISTORY.rst for 16.7.8. | 05 June 2016, 13:39:48 UTC |
| 5b5f672 | John Chilton | 05 June 2016, 13:36:47 UTC | Update against the latest galaxy/dev. | 05 June 2016, 13:36:47 UTC |
| c30d1d1 | John Chilton | 31 May 2016, 18:45:10 UTC | Fix report string bug in test verification code. Discovered while porting #10 back into Galaxy. | 31 May 2016, 18:45:10 UTC |
| baac2a3 | John Chilton | 31 May 2016, 18:21:37 UTC | Update against the latest Galaxy dev. | 31 May 2016, 18:22:58 UTC |
| 3ae6054 | John Chilton | 31 May 2016, 18:19:25 UTC | Merge pull request #10 from galaxyproject/tools_verify_as_a_lib Refactor test output verfication for reuse in planemo. | 31 May 2016, 18:19:25 UTC |
| 1f5e376 | John Chilton | 26 May 2016, 20:06:10 UTC | Refactor test output verfication for reuse in planemo. Planemo will use this library to verify outputs from testing other artifact types (Galaxy workflows, cwl tools and workflows) and testing outside of Galaxy. This commit refactors ot allow this and and contains other smaller changes. | 31 May 2016, 17:52:49 UTC |
| 18fe387 | John Chilton | 25 May 2016, 19:06:22 UTC | One more PY3 fix for that previous commit. | 25 May 2016, 19:06:22 UTC |
| 4f9653b | John Chilton | 25 May 2016, 19:01:34 UTC | Add new galaxy.tools.verify package to galaxy-lib. | 25 May 2016, 19:05:31 UTC |
| 1d5a124 | John Chilton | 25 May 2016, 18:58:46 UTC | Remove E203 exclusion for this repository. | 25 May 2016, 18:58:46 UTC |
| f1e2ace | John Chilton | 25 May 2016, 18:55:48 UTC | Update to latest copy of Galaxy utilities. | 25 May 2016, 18:55:48 UTC |
| f0d5b43 | John Chilton | 25 May 2016, 18:52:59 UTC | Make quoting in argv_to_str optional. | 25 May 2016, 18:52:59 UTC |
| b2029dc | John Chilton | 24 May 2016, 03:21:00 UTC | Starting work on 16.7.8 | 24 May 2016, 03:21:00 UTC |
| df296e2 | John Chilton | 24 May 2016, 03:20:01 UTC | Version 16.7.7 | 24 May 2016, 03:20:01 UTC |
| 38eca73 | John Chilton | 23 May 2016, 16:59:54 UTC | General cleanup and functionality expansion of docker_util. To allow execution of many more Docker operations from planemo. | 24 May 2016, 03:19:00 UTC |
| 63813cf | John Chilton | 12 May 2016, 20:34:34 UTC | Fix for change to cwl name - fallback to ID. | 12 May 2016, 20:34:34 UTC |
| 7a42156 | John Chilton | 12 May 2016, 02:27:24 UTC | Starting work on 16.7.7 | 12 May 2016, 02:27:24 UTC |
| 05d9bf3 | John Chilton | 12 May 2016, 02:26:42 UTC | Version 16.7.6 | 12 May 2016, 02:26:42 UTC |
| 09b697f | John Chilton | 12 May 2016, 02:26:24 UTC | Add HISTORY.rst text. | 12 May 2016, 02:26:24 UTC |
| 16bdb5e | John Chilton | 12 May 2016, 02:24:06 UTC | Starting work on 16.7.6 | 12 May 2016, 02:24:06 UTC |
| e7479dd | John Chilton | 12 May 2016, 01:59:29 UTC | Refactor galaxy.tools.cwl.schema to be actually optional dependency. xref https://github.com/galaxyproject/planemo/issues/475 | 12 May 2016, 01:59:29 UTC |
| 30ec4d9 | John Chilton | 11 May 2016, 20:23:49 UTC | Version 16.7.5 | 11 May 2016, 20:23:49 UTC |
| 0c0b3a9 | John Chilton | 11 May 2016, 20:23:37 UTC | Update HISTORY.rst. | 11 May 2016, 20:23:37 UTC |
| e0bdd79 | John Chilton | 11 May 2016, 19:23:00 UTC | Update cwltool library usage for latest cwltool release. | 11 May 2016, 20:13:11 UTC |
| 9588d18 | John Chilton | 10 May 2016, 23:12:28 UTC | Starting work on 16.7.5 | 10 May 2016, 23:12:28 UTC |
| 2b8dbce | John Chilton | 10 May 2016, 23:11:39 UTC | Version 16.7.4 | 10 May 2016, 23:11:39 UTC |
| b645833 | John Chilton | 10 May 2016, 23:10:48 UTC | Add HISTORY.rst entry for 16.7.4. | 10 May 2016, 23:10:48 UTC |
| d9f1890 | John Chilton | 10 May 2016, 20:37:08 UTC | Fix for ``galaxy.tools.loader_directory.py:looks_like_a_tool_cwl``. | 10 May 2016, 20:37:08 UTC |
| fbc7ce3 | John Chilton | 07 May 2016, 14:29:53 UTC | Starting work on 16.7.4 | 07 May 2016, 14:29:53 UTC |
| 0e57350 | John Chilton | 07 May 2016, 14:27:53 UTC | Version 16.7.3 | 07 May 2016, 14:27:53 UTC |
| a759bf0 | John Chilton | 07 May 2016, 14:26:34 UTC | Make cwltool_deps more robust and better documented. | 07 May 2016, 14:26:34 UTC |
| f45b54e | John Chilton | 06 May 2016, 17:40:40 UTC | Starting work on 16.7.3 | 06 May 2016, 17:40:40 UTC |
| 2feea1c | John Chilton | 06 May 2016, 17:38:29 UTC | Version 16.7.2 | 06 May 2016, 17:38:29 UTC |
| 54565ec | John Chilton | 06 May 2016, 17:38:06 UTC | Add HISTORY.rst for 16.7.2. | 06 May 2016, 17:38:06 UTC |
| 00d617c | John Chilton | 06 May 2016, 17:37:04 UTC | Merge pull request #9 from galaxyproject/planemo_improve Updates | 06 May 2016, 17:37:04 UTC |
| 3839014 | John Chilton | 05 May 2016, 17:03:36 UTC | Progress toward CWL support in galaxy-lib. | 06 May 2016, 17:31:10 UTC |
| a406c17 | John Chilton | 03 May 2016, 03:25:23 UTC | Starting work on 16.7.2 | 03 May 2016, 03:25:23 UTC |
| f4a5377 | John Chilton | 03 May 2016, 03:24:27 UTC | Version 16.7.1 | 03 May 2016, 03:24:27 UTC |
| 81ce382 | John Chilton | 03 May 2016, 03:23:59 UTC | Prepare for release of 16.7.1. | 03 May 2016, 03:23:59 UTC |
| 900548f | John Chilton | 03 May 2016, 01:49:03 UTC | Bring in recent Galaxy fixes. | 03 May 2016, 01:49:03 UTC |
| d6d7c7c | John Chilton | 03 May 2016, 01:46:12 UTC | Fix to general linter. | 03 May 2016, 01:48:36 UTC |
| 49907d3 | John Chilton | 03 May 2016, 01:37:33 UTC | Improvements to docs for the project. | 03 May 2016, 01:48:36 UTC |
| f8ea65c | John Chilton | 02 May 2016, 05:54:44 UTC | Fix test_objectstore test case for Python 3.4. | 02 May 2016, 05:54:44 UTC |
| 77cd7b1 | John Chilton | 28 April 2016, 19:49:50 UTC | Enhance library functions for tools. - Enhance lint and loaders to be able to handle tool parser objects instead of just raw XML. This will allow non-Galaxy-XML tool linting (e.g. CWL) and allow linters to use higher-level abstraction. - Replace tol-level XML linter with a "general" linter that parses attributes using the ToolSource abstraction. - Small updates to linting for recent additions to tool framework. - More docstring usage and improved import order. - Fixes discovered through planemo for "finding" non-XML tools. - Revised CWL tool loader that will allow more fine grain loading. | 02 May 2016, 05:45:30 UTC |
| d17e83c | John Chilton | 02 May 2016, 05:44:17 UTC | Update for latest Galaxy changes. | 02 May 2016, 05:44:17 UTC |
| 62b639c | John Chilton | 21 April 2016, 18:48:01 UTC | Starting work on 16.7.1 | 21 April 2016, 18:48:01 UTC |
| 989237a | John Chilton | 21 April 2016, 18:39:10 UTC | Version 16.7.0 | 21 April 2016, 18:39:10 UTC |
| c0a7f7d | John Chilton | 21 April 2016, 18:38:29 UTC | Update version to 16.7.0.dev0. | 21 April 2016, 18:38:29 UTC |
| fffc5aa | John Chilton | 21 April 2016, 18:36:14 UTC | Update with latest galaxy-dev. | 21 April 2016, 18:36:14 UTC |
| f924f56 | John Chilton | 08 April 2016, 15:42:05 UTC | Merge pull request #6 from jmchilton/dev_update Update to latest Galaxy-dev. | 08 April 2016, 15:42:05 UTC |
| ae61fc4 | John Chilton | 08 April 2016, 14:28:54 UTC | Fixup latest dev push. | 08 April 2016, 14:28:54 UTC |
| 8e5e3e6 | John Chilton | 08 April 2016, 14:20:00 UTC | Update to latest Galaxy-dev. | 08 April 2016, 14:20:00 UTC |
| adbb075 | John Chilton | 15 February 2016, 11:20:20 UTC | Starting work on 16.4.1 | 15 February 2016, 11:20:20 UTC |
| c804eac | John Chilton | 15 February 2016, 11:11:16 UTC | Update HISTORY.rst. | 15 February 2016, 11:11:16 UTC |
| 9e6eb6b | John Chilton | 15 February 2016, 11:08:01 UTC | Update to the latest dev branch of Galaxy. | 15 February 2016, 11:08:01 UTC |
| cd2979e | John Chilton | 01 February 2016, 14:17:19 UTC | Update against latest Galaxy. | 01 February 2016, 14:21:39 UTC |
| f27294f | John Chilton | 14 January 2016, 05:38:41 UTC | Update minimum allowable six version. | 14 January 2016, 05:38:41 UTC |
| 8b99fc0 | John Chilton | 14 January 2016, 05:19:49 UTC | Version 16.1.9 | 14 January 2016, 05:19:49 UTC |
| ea00464 | John Chilton | 14 January 2016, 05:14:59 UTC | Fixup galaxy.exceptions for source installation. | 14 January 2016, 05:14:59 UTC |
| d25c348 | John Chilton | 12 January 2016, 19:47:13 UTC | Starting work on 16.1.9 | 12 January 2016, 19:47:13 UTC |
| 0553f61 | John Chilton | 12 January 2016, 19:43:48 UTC | Version 16.1.8 | 12 January 2016, 19:43:48 UTC |
| ce1f08c | John Chilton | 12 January 2016, 19:43:07 UTC | Update README. | 12 January 2016, 19:43:07 UTC |
| 4b451ed | John Chilton | 12 January 2016, 19:32:59 UTC | Update against latest Galaxy release_16.01. | 12 January 2016, 19:32:59 UTC |
| f2bfb14 | John Chilton | 03 January 2016, 15:50:49 UTC | Starting work on 16.1.8 | 03 January 2016, 15:50:49 UTC |
