https://github.com/galaxyproject/galaxy

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Revision Author Date Message Commit Date
b8d5f9b Version 16.10.6 07 October 2016, 18:45:01 UTC
ce16f3f Merge pull request #22 from bgruening/patch-2 New features for mulled 07 October 2016, 18:41:08 UTC
69b912d Allow local binds 07 October 2016, 18:27:19 UTC
cb0ef16 Features and fix * test parameter to override the tests * fix bug which prevents to use this file as tool * allow local file to be build 07 October 2016, 18:26:00 UTC
858804b Starting work on 16.10.6 05 October 2016, 03:57:49 UTC
3609313 Version 16.10.5 05 October 2016, 03:56:47 UTC
64b25fa Prep next release. 05 October 2016, 03:56:36 UTC
9048f65 More spelling fixes from @nsoranzo. 04 October 2016, 14:56:39 UTC
985c70d Merge pull request #20 from galaxyproject/doc_update Doc update 04 October 2016, 14:36:32 UTC
aa6a81f Spelling and language fixes from @nsoranzo's review or galaxyproject/galaxy#3003. 04 October 2016, 14:35:28 UTC
e22d302 CI infrastructure for docstrings. 04 October 2016, 14:35:18 UTC
5310e8c Work on docstrings. This took like an hour and I got nothing done. Docstrings are hard. 04 October 2016, 14:35:18 UTC
7cdd335 Rebuid docs. 04 October 2016, 14:35:18 UTC
124484c Allow hashing CondaTarget class for downstream usage in planemo. 04 October 2016, 03:12:17 UTC
eb37703 Starting work on 16.10.5 04 October 2016, 01:48:34 UTC
9e59e25 Version 16.10.4 04 October 2016, 01:47:46 UTC
2b576e8 Prep HISTORY.rst for next release. 04 October 2016, 01:47:37 UTC
73d2bdf Fix PyPI for galaxy-lib. 04 October 2016, 01:35:35 UTC
9000eaa Improve robustness of quay_versions in mulled.util. 04 October 2016, 01:31:22 UTC
4539b3c More mulled fixes. 04 October 2016, 00:54:08 UTC
fc2df25 Merge pull request #19 from galaxyproject/mulled_v2 Improved Mulled Support 03 October 2016, 21:09:08 UTC
3c2e3cb Improved Mulled support - involucro auto_init and build on-demand resolver for Galaxy. Also bug fix where PyPI package wouldn't actually work. 03 October 2016, 20:36:19 UTC
fa15a45 Refactor mull_target toward usage outside CLI. 03 October 2016, 16:37:42 UTC
c9c1953 Fix mulled container resolver for 0-requirement tools. 03 October 2016, 14:18:43 UTC
ea64c91 Fix not checking multi-target in mulled cache resolver. Mentioned by @mvdbeek here https://github.com/galaxyproject/galaxy/pull/2986#discussion_r81468689. 03 October 2016, 14:10:56 UTC
b9bec08 Merge pull request #18 from jmchilton/update_bioconda Add script to update bioconda recipe for galaxy-lib. 03 October 2016, 13:16:06 UTC
e9edb3e Add script to update bioconda recipe for galaxy-lib. xref https://github.com/bioconda/bioconda-recipes/pull/2484 03 October 2016, 12:44:24 UTC
3989088 Starting work on 16.10.4 02 October 2016, 12:33:31 UTC
2e368ee Version 16.10.3 02 October 2016, 12:32:42 UTC
56f067c Prep next version. 02 October 2016, 12:32:25 UTC
1a41dfa Merge pull request #17 from galaxyproject/conda_lint Conda improvements (see commits) 02 October 2016, 12:31:04 UTC
46b00ca Make Conda util's is_target_available more general... This will allow it to be reused with Conda target linting downstream. 02 October 2016, 12:27:31 UTC
96e81e5 Fix bug in conda_compat. 02 October 2016, 12:27:11 UTC
3ba2b96 Starting work on 16.10.3 30 September 2016, 10:55:28 UTC
63779ea Version 16.10.2 30 September 2016, 10:54:49 UTC
709cea8 Fixup setup.py. Should fix package on PyPI on next release. 30 September 2016, 10:53:57 UTC
cc84654 Starting work on 16.10.2 29 September 2016, 20:47:01 UTC
0664239 Version 16.10.1 29 September 2016, 20:45:57 UTC
8934f43 Prep the next version. 29 September 2016, 20:45:44 UTC
5397072 Merge pull request #15 from galaxyproject/mulled Mulled support. 29 September 2016, 20:28:14 UTC
27e2375 Implement a Mulled ContainerResolver. By default enable search on quay.io/mulled/, but the ContainerResolver can be updated to search other namespaces on quay.io. 29 September 2016, 20:23:11 UTC
4250169 Refactor container discovery for tools to use a plugin framework. Using galaxy.util.plugin_config to get XML/JSON/YAML parsing and auto-discovery of plugins in the new galaxy.tools.deps.container_resolvers. Small tweaks to some existing docs. 29 September 2016, 19:40:19 UTC
a552edc Add script to run mulled from directories of and single TSV files. This should be able to serve as the CI target for communities to be able to turn Github PRs into mulled images. 29 September 2016, 19:40:18 UTC
70f3603 Implement mulled-build-tool to build/publish containers for tools. 29 September 2016, 19:40:18 UTC
39bcfae Improved conda compat layer - rebase with mulled stuff and extract into own commit. 29 September 2016, 19:40:18 UTC
9c92a42 Implement library and CLI commands for mulled functionality. See also https://github.com/mulled/auto-mulled. 29 September 2016, 19:40:18 UTC
b34a48a Merge pull request #14 from galaxyproject/update_160927 Bring in the latest Galaxy updates from dev. 27 September 2016, 18:25:07 UTC
3716586 Bring in the latest Galaxy updates from dev. 27 September 2016, 17:46:25 UTC
9199a33 Merge pull request #13 from galaxyproject/update_160926 Update to latest dev changes. 26 September 2016, 15:12:01 UTC
626929d Update to latest dev changes. 26 September 2016, 14:21:19 UTC
af6a903 Merge pull request #12 from galaxyproject/import-order-linting Lint import order w/fixes. 01 September 2016, 19:46:16 UTC
263e8f9 Lint import order w/fixes. To the new Galaxy-standard. 01 September 2016, 18:27:59 UTC
9c167f8 Starting work on 16.10.1 31 August 2016, 16:26:27 UTC
bd34797 Version 16.10.0 31 August 2016, 16:26:25 UTC
2daec2f Merge pull request #11 from galaxyproject/update_to_16.10.1 Update to 16.10.0 31 August 2016, 16:21:17 UTC
c5f0f51 Prepare 16.10.0. 31 August 2016, 16:09:37 UTC
3f2d0be Drop Python 2.6 testing. 31 August 2016, 16:09:37 UTC
55cffa3 Fixes to project files. 31 August 2016, 15:54:43 UTC
28758cb Bring in filelock refactoring to fix conda linting/tests. 31 August 2016, 15:54:20 UTC
d4ac8a7 Fix Python 3.4 error. 31 August 2016, 14:51:12 UTC
6f6b537 WIP: Update to the latest galaxy libs. (16.10 just post release of 16.07). 31 August 2016, 14:40:07 UTC
3ac4994 Starting work on 16.7.11 04 August 2016, 15:09:37 UTC
77f14ab Version 16.7.10 04 August 2016, 15:07:52 UTC
8075714 Update to CWL 1.0 documentation syntax. 04 August 2016, 15:06:54 UTC
9ff97e4 Starting work on 16.7.10 14 June 2016, 02:44:33 UTC
a214daf Version 16.7.9 14 June 2016, 02:43:26 UTC
10a1a35 Add HISTORY.rst content for new release. 14 June 2016, 02:43:11 UTC
dd71a19 Update to latest Galaxy changes... 13 June 2016, 19:01:53 UTC
0d84dde Update CWL abstractions for gx and cwltool changes. 13 June 2016, 18:58:44 UTC
b8ed220 Starting work on 16.7.9 05 June 2016, 13:41:07 UTC
5b30850 Version 16.7.8 05 June 2016, 13:40:19 UTC
e837363 Update HISTORY.rst for 16.7.8. 05 June 2016, 13:39:48 UTC
5b5f672 Update against the latest galaxy/dev. 05 June 2016, 13:36:47 UTC
c30d1d1 Fix report string bug in test verification code. Discovered while porting #10 back into Galaxy. 31 May 2016, 18:45:10 UTC
baac2a3 Update against the latest Galaxy dev. 31 May 2016, 18:22:58 UTC
3ae6054 Merge pull request #10 from galaxyproject/tools_verify_as_a_lib Refactor test output verfication for reuse in planemo. 31 May 2016, 18:19:25 UTC
1f5e376 Refactor test output verfication for reuse in planemo. Planemo will use this library to verify outputs from testing other artifact types (Galaxy workflows, cwl tools and workflows) and testing outside of Galaxy. This commit refactors ot allow this and and contains other smaller changes. 31 May 2016, 17:52:49 UTC
18fe387 One more PY3 fix for that previous commit. 25 May 2016, 19:06:22 UTC
4f9653b Add new galaxy.tools.verify package to galaxy-lib. 25 May 2016, 19:05:31 UTC
1d5a124 Remove E203 exclusion for this repository. 25 May 2016, 18:58:46 UTC
f1e2ace Update to latest copy of Galaxy utilities. 25 May 2016, 18:55:48 UTC
f0d5b43 Make quoting in argv_to_str optional. 25 May 2016, 18:52:59 UTC
b2029dc Starting work on 16.7.8 24 May 2016, 03:21:00 UTC
df296e2 Version 16.7.7 24 May 2016, 03:20:01 UTC
38eca73 General cleanup and functionality expansion of docker_util. To allow execution of many more Docker operations from planemo. 24 May 2016, 03:19:00 UTC
63813cf Fix for change to cwl name - fallback to ID. 12 May 2016, 20:34:34 UTC
7a42156 Starting work on 16.7.7 12 May 2016, 02:27:24 UTC
05d9bf3 Version 16.7.6 12 May 2016, 02:26:42 UTC
09b697f Add HISTORY.rst text. 12 May 2016, 02:26:24 UTC
16bdb5e Starting work on 16.7.6 12 May 2016, 02:24:06 UTC
e7479dd Refactor galaxy.tools.cwl.schema to be actually optional dependency. xref https://github.com/galaxyproject/planemo/issues/475 12 May 2016, 01:59:29 UTC
30ec4d9 Version 16.7.5 11 May 2016, 20:23:49 UTC
0c0b3a9 Update HISTORY.rst. 11 May 2016, 20:23:37 UTC
e0bdd79 Update cwltool library usage for latest cwltool release. 11 May 2016, 20:13:11 UTC
9588d18 Starting work on 16.7.5 10 May 2016, 23:12:28 UTC
2b8dbce Version 16.7.4 10 May 2016, 23:11:39 UTC
b645833 Add HISTORY.rst entry for 16.7.4. 10 May 2016, 23:10:48 UTC
d9f1890 Fix for ``galaxy.tools.loader_directory.py:looks_like_a_tool_cwl``. 10 May 2016, 20:37:08 UTC
fbc7ce3 Starting work on 16.7.4 07 May 2016, 14:29:53 UTC
0e57350 Version 16.7.3 07 May 2016, 14:27:53 UTC
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