| a6d69ac | John Chilton | 10 October 2016, 15:02:18 UTC | Version 16.10.8 | 10 October 2016, 15:02:18 UTC |
| 381106a | John Chilton | 10 October 2016, 15:02:04 UTC | Prep 16.10.8. | 10 October 2016, 15:02:04 UTC |
| 3c983e3 | John Chilton | 08 October 2016, 20:48:41 UTC | Merge pull request #27 from bgruening/patch-4 Make use of the build version | 08 October 2016, 20:48:41 UTC |
| 0db99bb | Björn Grüning | 08 October 2016, 20:46:14 UTC | Make use of the build version This should now work: ``` mulled-build build 'samtools=1.3.1--4' --test 'samtools --help' -n biocontainers ``` | 08 October 2016, 20:46:14 UTC |
| 86c0598 | John Chilton | 08 October 2016, 20:00:33 UTC | Merge pull request #26 from daler/py3-mulled py3 compatibility for mulled | 08 October 2016, 20:00:33 UTC |
| 3b23f3d | John Chilton | 08 October 2016, 20:00:23 UTC | Merge pull request #25 from bgruening/patch-3 Include invfile.lua in tarballs | 08 October 2016, 20:00:23 UTC |
| 71098fc | daler | 08 October 2016, 19:51:44 UTC | py3 compatibility for mulled | 08 October 2016, 19:51:44 UTC |
| 42965f4 | Björn Grüning | 08 October 2016, 19:36:21 UTC | Include invfile.lua in tarballs | 08 October 2016, 19:36:21 UTC |
| 48c0660 | John Chilton | 08 October 2016, 13:53:29 UTC | Starting work on 16.10.8 | 08 October 2016, 13:53:29 UTC |
| ca3c77f | John Chilton | 08 October 2016, 13:52:57 UTC | Version 16.10.7 | 08 October 2016, 13:52:57 UTC |
| 22bafd1 | John Chilton | 08 October 2016, 13:52:31 UTC | Merge pull request #24 from galaxyproject/16.10.7 16.10.7 | 08 October 2016, 13:52:31 UTC |
| 2487256 | John Chilton | 08 October 2016, 13:49:25 UTC | Fix bioconda support by adding conda-forge to default conda channels. xref https://github.com/galaxyproject/galaxy/pull/3023 | 08 October 2016, 13:49:25 UTC |
| 1f23662 | John Chilton | 08 October 2016, 13:48:27 UTC | Prep HISTORY.rst for another release. | 08 October 2016, 13:48:27 UTC |
| 136a7d5 | John Chilton | 08 October 2016, 13:45:17 UTC | Merge pull request #23 from bgruening/patch-2 Fix bug in `mulled_build_channel` | 08 October 2016, 13:45:17 UTC |
| 1fbd225 | Björn Grüning | 08 October 2016, 12:16:02 UTC | Fix mulled search! | 08 October 2016, 12:16:02 UTC |
| d9011d1 | Björn Grüning | 07 October 2016, 22:25:59 UTC | Set default BINDS in mulled_build | 07 October 2016, 22:25:59 UTC |
| 70057b5 | Björn Grüning | 07 October 2016, 22:24:09 UTC | Fix Lua strangeness | 07 October 2016, 22:24:09 UTC |
| 8bb806e | Björn Grüning | 07 October 2016, 21:55:05 UTC | Fix bug in `mulled_build_channel` | 07 October 2016, 21:55:05 UTC |
| 418a189 | John Chilton | 07 October 2016, 18:45:32 UTC | Starting work on 16.10.7 | 07 October 2016, 18:45:32 UTC |
| b8d5f9b | John Chilton | 07 October 2016, 18:45:01 UTC | Version 16.10.6 | 07 October 2016, 18:45:01 UTC |
| ce16f3f | John Chilton | 07 October 2016, 18:41:08 UTC | Merge pull request #22 from bgruening/patch-2 New features for mulled | 07 October 2016, 18:41:08 UTC |
| 69b912d | Björn Grüning | 07 October 2016, 18:27:19 UTC | Allow local binds | 07 October 2016, 18:27:19 UTC |
| cb0ef16 | Björn Grüning | 07 October 2016, 18:26:00 UTC | Features and fix * test parameter to override the tests * fix bug which prevents to use this file as tool * allow local file to be build | 07 October 2016, 18:26:00 UTC |
| 858804b | John Chilton | 05 October 2016, 03:57:49 UTC | Starting work on 16.10.6 | 05 October 2016, 03:57:49 UTC |
| 3609313 | John Chilton | 05 October 2016, 03:56:47 UTC | Version 16.10.5 | 05 October 2016, 03:56:47 UTC |
| 64b25fa | John Chilton | 05 October 2016, 03:56:36 UTC | Prep next release. | 05 October 2016, 03:56:36 UTC |
| 9048f65 | John Chilton | 04 October 2016, 14:54:16 UTC | More spelling fixes from @nsoranzo. | 04 October 2016, 14:56:39 UTC |
| 985c70d | John Chilton | 04 October 2016, 14:36:32 UTC | Merge pull request #20 from galaxyproject/doc_update Doc update | 04 October 2016, 14:36:32 UTC |
| aa6a81f | John Chilton | 04 October 2016, 14:35:28 UTC | Spelling and language fixes from @nsoranzo's review or galaxyproject/galaxy#3003. | 04 October 2016, 14:35:28 UTC |
| e22d302 | John Chilton | 04 October 2016, 12:56:41 UTC | CI infrastructure for docstrings. | 04 October 2016, 14:35:18 UTC |
| 5310e8c | John Chilton | 04 October 2016, 01:12:05 UTC | Work on docstrings. This took like an hour and I got nothing done. Docstrings are hard. | 04 October 2016, 14:35:18 UTC |
| 7cdd335 | John Chilton | 04 October 2016, 01:11:47 UTC | Rebuid docs. | 04 October 2016, 14:35:18 UTC |
| 124484c | John Chilton | 04 October 2016, 03:02:50 UTC | Allow hashing CondaTarget class for downstream usage in planemo. | 04 October 2016, 03:12:17 UTC |
| eb37703 | John Chilton | 04 October 2016, 01:48:34 UTC | Starting work on 16.10.5 | 04 October 2016, 01:48:34 UTC |
| 9e59e25 | John Chilton | 04 October 2016, 01:47:46 UTC | Version 16.10.4 | 04 October 2016, 01:47:46 UTC |
| 2b576e8 | John Chilton | 04 October 2016, 01:47:37 UTC | Prep HISTORY.rst for next release. | 04 October 2016, 01:47:37 UTC |
| 73d2bdf | John Chilton | 04 October 2016, 01:35:35 UTC | Fix PyPI for galaxy-lib. | 04 October 2016, 01:35:35 UTC |
| 9000eaa | John Chilton | 04 October 2016, 01:31:22 UTC | Improve robustness of quay_versions in mulled.util. | 04 October 2016, 01:31:22 UTC |
| 4539b3c | John Chilton | 03 October 2016, 22:00:29 UTC | More mulled fixes. | 04 October 2016, 00:54:08 UTC |
| fc2df25 | John Chilton | 03 October 2016, 21:09:08 UTC | Merge pull request #19 from galaxyproject/mulled_v2 Improved Mulled Support | 03 October 2016, 21:09:08 UTC |
| 3c2e3cb | John Chilton | 03 October 2016, 20:03:54 UTC | Improved Mulled support - involucro auto_init and build on-demand resolver for Galaxy. Also bug fix where PyPI package wouldn't actually work. | 03 October 2016, 20:36:19 UTC |
| fa15a45 | John Chilton | 03 October 2016, 16:29:18 UTC | Refactor mull_target toward usage outside CLI. | 03 October 2016, 16:37:42 UTC |
| c9c1953 | John Chilton | 03 October 2016, 14:18:43 UTC | Fix mulled container resolver for 0-requirement tools. | 03 October 2016, 14:18:43 UTC |
| ea64c91 | John Chilton | 03 October 2016, 14:10:56 UTC | Fix not checking multi-target in mulled cache resolver. Mentioned by @mvdbeek here https://github.com/galaxyproject/galaxy/pull/2986#discussion_r81468689. | 03 October 2016, 14:10:56 UTC |
| b9bec08 | John Chilton | 03 October 2016, 13:16:06 UTC | Merge pull request #18 from jmchilton/update_bioconda Add script to update bioconda recipe for galaxy-lib. | 03 October 2016, 13:16:06 UTC |
| e9edb3e | John Chilton | 03 October 2016, 12:44:24 UTC | Add script to update bioconda recipe for galaxy-lib. xref https://github.com/bioconda/bioconda-recipes/pull/2484 | 03 October 2016, 12:44:24 UTC |
| 3989088 | John Chilton | 02 October 2016, 12:33:31 UTC | Starting work on 16.10.4 | 02 October 2016, 12:33:31 UTC |
| 2e368ee | John Chilton | 02 October 2016, 12:32:42 UTC | Version 16.10.3 | 02 October 2016, 12:32:42 UTC |
| 56f067c | John Chilton | 02 October 2016, 12:32:25 UTC | Prep next version. | 02 October 2016, 12:32:25 UTC |
| 1a41dfa | John Chilton | 02 October 2016, 12:31:04 UTC | Merge pull request #17 from galaxyproject/conda_lint Conda improvements (see commits) | 02 October 2016, 12:31:04 UTC |
| 46b00ca | John Chilton | 02 October 2016, 12:27:31 UTC | Make Conda util's is_target_available more general... This will allow it to be reused with Conda target linting downstream. | 02 October 2016, 12:27:31 UTC |
| 96e81e5 | John Chilton | 02 October 2016, 12:27:11 UTC | Fix bug in conda_compat. | 02 October 2016, 12:27:11 UTC |
| 3ba2b96 | John Chilton | 30 September 2016, 10:55:28 UTC | Starting work on 16.10.3 | 30 September 2016, 10:55:28 UTC |
| 63779ea | John Chilton | 30 September 2016, 10:54:49 UTC | Version 16.10.2 | 30 September 2016, 10:54:49 UTC |
| 709cea8 | John Chilton | 30 September 2016, 10:52:16 UTC | Fixup setup.py. Should fix package on PyPI on next release. | 30 September 2016, 10:53:57 UTC |
| cc84654 | John Chilton | 29 September 2016, 20:47:01 UTC | Starting work on 16.10.2 | 29 September 2016, 20:47:01 UTC |
| 0664239 | John Chilton | 29 September 2016, 20:45:57 UTC | Version 16.10.1 | 29 September 2016, 20:45:57 UTC |
| 8934f43 | John Chilton | 29 September 2016, 20:45:44 UTC | Prep the next version. | 29 September 2016, 20:45:44 UTC |
| 5397072 | John Chilton | 29 September 2016, 20:28:14 UTC | Merge pull request #15 from galaxyproject/mulled Mulled support. | 29 September 2016, 20:28:14 UTC |
| 27e2375 | John Chilton | 27 September 2016, 18:18:54 UTC | Implement a Mulled ContainerResolver. By default enable search on quay.io/mulled/, but the ContainerResolver can be updated to search other namespaces on quay.io. | 29 September 2016, 20:23:11 UTC |
| 4250169 | John Chilton | 27 September 2016, 17:33:50 UTC | Refactor container discovery for tools to use a plugin framework. Using galaxy.util.plugin_config to get XML/JSON/YAML parsing and auto-discovery of plugins in the new galaxy.tools.deps.container_resolvers. Small tweaks to some existing docs. | 29 September 2016, 19:40:19 UTC |
| a552edc | John Chilton | 29 September 2016, 15:52:52 UTC | Add script to run mulled from directories of and single TSV files. This should be able to serve as the CI target for communities to be able to turn Github PRs into mulled images. | 29 September 2016, 19:40:18 UTC |
| 70f3603 | John Chilton | 29 September 2016, 04:13:57 UTC | Implement mulled-build-tool to build/publish containers for tools. | 29 September 2016, 19:40:18 UTC |
| 39bcfae | John Chilton | 29 September 2016, 17:46:53 UTC | Improved conda compat layer - rebase with mulled stuff and extract into own commit. | 29 September 2016, 19:40:18 UTC |
| 9c92a42 | John Chilton | 26 September 2016, 20:14:57 UTC | Implement library and CLI commands for mulled functionality. See also https://github.com/mulled/auto-mulled. | 29 September 2016, 19:40:18 UTC |
| b34a48a | John Chilton | 27 September 2016, 18:25:07 UTC | Merge pull request #14 from galaxyproject/update_160927 Bring in the latest Galaxy updates from dev. | 27 September 2016, 18:25:07 UTC |
| 3716586 | John Chilton | 27 September 2016, 17:37:02 UTC | Bring in the latest Galaxy updates from dev. | 27 September 2016, 17:46:25 UTC |
| 9199a33 | John Chilton | 26 September 2016, 15:12:01 UTC | Merge pull request #13 from galaxyproject/update_160926 Update to latest dev changes. | 26 September 2016, 15:12:01 UTC |
| 626929d | John Chilton | 26 September 2016, 14:07:22 UTC | Update to latest dev changes. | 26 September 2016, 14:21:19 UTC |
| af6a903 | John Chilton | 01 September 2016, 19:46:16 UTC | Merge pull request #12 from galaxyproject/import-order-linting Lint import order w/fixes. | 01 September 2016, 19:46:16 UTC |
| 263e8f9 | John Chilton | 01 September 2016, 17:48:01 UTC | Lint import order w/fixes. To the new Galaxy-standard. | 01 September 2016, 18:27:59 UTC |
| 9c167f8 | John Chilton | 31 August 2016, 16:22:48 UTC | Starting work on 16.10.1 | 31 August 2016, 16:26:27 UTC |
| bd34797 | John Chilton | 31 August 2016, 16:22:06 UTC | Version 16.10.0 | 31 August 2016, 16:26:25 UTC |
| 2daec2f | John Chilton | 31 August 2016, 16:21:17 UTC | Merge pull request #11 from galaxyproject/update_to_16.10.1 Update to 16.10.0 | 31 August 2016, 16:21:17 UTC |
| c5f0f51 | John Chilton | 31 August 2016, 15:56:29 UTC | Prepare 16.10.0. | 31 August 2016, 16:09:37 UTC |
| 3f2d0be | John Chilton | 31 August 2016, 16:09:12 UTC | Drop Python 2.6 testing. | 31 August 2016, 16:09:37 UTC |
| 55cffa3 | John Chilton | 31 August 2016, 15:54:43 UTC | Fixes to project files. | 31 August 2016, 15:54:43 UTC |
| 28758cb | John Chilton | 31 August 2016, 15:54:20 UTC | Bring in filelock refactoring to fix conda linting/tests. | 31 August 2016, 15:54:20 UTC |
| d4ac8a7 | John Chilton | 31 August 2016, 14:51:12 UTC | Fix Python 3.4 error. | 31 August 2016, 14:51:12 UTC |
| 6f6b537 | John Chilton | 31 August 2016, 14:40:07 UTC | WIP: Update to the latest galaxy libs. (16.10 just post release of 16.07). | 31 August 2016, 14:40:07 UTC |
| 3ac4994 | John Chilton | 04 August 2016, 15:09:37 UTC | Starting work on 16.7.11 | 04 August 2016, 15:09:37 UTC |
| 77f14ab | John Chilton | 04 August 2016, 15:07:52 UTC | Version 16.7.10 | 04 August 2016, 15:07:52 UTC |
| 8075714 | John Chilton | 04 August 2016, 15:06:54 UTC | Update to CWL 1.0 documentation syntax. | 04 August 2016, 15:06:54 UTC |
| 9ff97e4 | John Chilton | 14 June 2016, 02:44:33 UTC | Starting work on 16.7.10 | 14 June 2016, 02:44:33 UTC |
| a214daf | John Chilton | 14 June 2016, 02:43:26 UTC | Version 16.7.9 | 14 June 2016, 02:43:26 UTC |
| 10a1a35 | John Chilton | 14 June 2016, 02:43:11 UTC | Add HISTORY.rst content for new release. | 14 June 2016, 02:43:11 UTC |
| dd71a19 | John Chilton | 13 June 2016, 19:01:53 UTC | Update to latest Galaxy changes... | 13 June 2016, 19:01:53 UTC |
| 0d84dde | John Chilton | 13 June 2016, 18:58:44 UTC | Update CWL abstractions for gx and cwltool changes. | 13 June 2016, 18:58:44 UTC |
| b8ed220 | John Chilton | 05 June 2016, 13:41:07 UTC | Starting work on 16.7.9 | 05 June 2016, 13:41:07 UTC |
| 5b30850 | John Chilton | 05 June 2016, 13:40:19 UTC | Version 16.7.8 | 05 June 2016, 13:40:19 UTC |
| e837363 | John Chilton | 05 June 2016, 13:39:48 UTC | Update HISTORY.rst for 16.7.8. | 05 June 2016, 13:39:48 UTC |
| 5b5f672 | John Chilton | 05 June 2016, 13:36:47 UTC | Update against the latest galaxy/dev. | 05 June 2016, 13:36:47 UTC |
| c30d1d1 | John Chilton | 31 May 2016, 18:45:10 UTC | Fix report string bug in test verification code. Discovered while porting #10 back into Galaxy. | 31 May 2016, 18:45:10 UTC |
| baac2a3 | John Chilton | 31 May 2016, 18:21:37 UTC | Update against the latest Galaxy dev. | 31 May 2016, 18:22:58 UTC |
| 3ae6054 | John Chilton | 31 May 2016, 18:19:25 UTC | Merge pull request #10 from galaxyproject/tools_verify_as_a_lib Refactor test output verfication for reuse in planemo. | 31 May 2016, 18:19:25 UTC |
| 1f5e376 | John Chilton | 26 May 2016, 20:06:10 UTC | Refactor test output verfication for reuse in planemo. Planemo will use this library to verify outputs from testing other artifact types (Galaxy workflows, cwl tools and workflows) and testing outside of Galaxy. This commit refactors ot allow this and and contains other smaller changes. | 31 May 2016, 17:52:49 UTC |
| 18fe387 | John Chilton | 25 May 2016, 19:06:22 UTC | One more PY3 fix for that previous commit. | 25 May 2016, 19:06:22 UTC |
| 4f9653b | John Chilton | 25 May 2016, 19:01:34 UTC | Add new galaxy.tools.verify package to galaxy-lib. | 25 May 2016, 19:05:31 UTC |
| 1d5a124 | John Chilton | 25 May 2016, 18:58:46 UTC | Remove E203 exclusion for this repository. | 25 May 2016, 18:58:46 UTC |
| f1e2ace | John Chilton | 25 May 2016, 18:55:48 UTC | Update to latest copy of Galaxy utilities. | 25 May 2016, 18:55:48 UTC |
