| 8206c52 | John Chilton | 14 December 2016, 13:20:06 UTC | Version 17.1.1 | 14 December 2016, 13:20:06 UTC |
| 738b8b9 | John Chilton | 14 December 2016, 13:19:49 UTC | Prep release of 17.1.1 to fix Planemo. | 14 December 2016, 13:19:49 UTC |
| bf550f4 | John Chilton | 14 December 2016, 13:17:46 UTC | Merge pull request #38 from jmchilton/shell_restore Revert commands.shell changes from galaxyproject/galaxy#3129. | 14 December 2016, 13:17:45 UTC |
| 3d686a7 | John Chilton | 13 December 2016, 18:28:49 UTC | Revert commands.shell changes from galaxyproject/galaxy#3129. It seems like people prefer to see the interactive shell https://github.com/galaxyproject/galaxy/issues/3259. See follow up here https://github.com/galaxyproject/galaxy/issues/3309. This also fixes an issue caused by the change of the constructor interface for CommandLineException in galaxyproject/galaxy#3129. | 13 December 2016, 18:32:41 UTC |
| 58d413b | John Chilton | 12 December 2016, 14:25:27 UTC | Starting work on 17.1.1 | 12 December 2016, 14:25:27 UTC |
| 929bbe2 | John Chilton | 12 December 2016, 14:24:58 UTC | Version 17.1.0 | 12 December 2016, 14:24:58 UTC |
| 4d2c3d0 | John Chilton | 12 December 2016, 14:24:33 UTC | Prep next release. | 12 December 2016, 14:24:33 UTC |
| 29a5357 | John Chilton | 12 December 2016, 14:22:21 UTC | Merge pull request #37 from galaxyproject/update_20161212 Update to latest galaxy dev commit. | 12 December 2016, 14:22:21 UTC |
| a27bf44 | John Chilton | 12 December 2016, 13:54:36 UTC | Another flake8 fix. | 12 December 2016, 13:54:36 UTC |
| cbdd73b | John Chilton | 12 December 2016, 13:48:42 UTC | Update to latest galaxy dev commit. | 12 December 2016, 13:48:42 UTC |
| 6123520 | John Chilton | 09 December 2016, 20:06:48 UTC | Merge pull request #36 from galaxyproject/mulled-quite-install Install packages quietly ... do not show the progressbar | 09 December 2016, 20:06:48 UTC |
| 6fbf652 | Björn Grüning | 09 December 2016, 19:38:55 UTC | Install packages quietly ... do not show the progressbar | 09 December 2016, 19:38:55 UTC |
| 2a18f10 | John Chilton | 14 November 2016, 19:23:00 UTC | Merge pull request #35 from jmchilton/latest_dev_20161114 Bring in one more dev change. | 14 November 2016, 19:23:00 UTC |
| b670d29 | John Chilton | 14 November 2016, 17:42:28 UTC | Bring in one more dev change. | 14 November 2016, 17:42:28 UTC |
| df9efed | John Chilton | 14 November 2016, 17:41:05 UTC | Merge pull request #34 from jmchilton/latest_dev_20161114 Update to latest galaxy-dev. | 14 November 2016, 17:41:05 UTC |
| 856c24e | John Chilton | 14 November 2016, 14:36:58 UTC | Update to latest galaxy-dev. Requires bringing in image_util from galaxy.util. | 14 November 2016, 17:32:09 UTC |
| c2d90ab | John Chilton | 14 November 2016, 03:28:01 UTC | Merge pull request #33 from galaxyproject/mulled_error_code Mulled error code | 14 November 2016, 03:28:01 UTC |
| 8c276c0 | Bjoern Gruening | 12 November 2016, 18:24:02 UTC | fix lint errors all over | 12 November 2016, 18:24:02 UTC |
| 3b319f4 | Björn Grüning | 12 November 2016, 15:48:55 UTC | fix lint error | 12 November 2016, 15:48:55 UTC |
| b18d847 | Björn Grüning | 12 November 2016, 15:25:59 UTC | Tool now return the error code obtained by subprocess | 12 November 2016, 15:25:59 UTC |
| b11056f | Björn Grüning | 12 November 2016, 15:24:38 UTC | Return error code to downstream | 12 November 2016, 15:24:38 UTC |
| ca3ea45 | Martin Cech | 24 October 2016, 14:29:15 UTC | fix planemo copypasta | 24 October 2016, 14:29:15 UTC |
| 61faf50 | John Chilton | 24 October 2016, 14:27:30 UTC | Starting work on 16.10.11 | 24 October 2016, 14:27:30 UTC |
| a589695 | John Chilton | 24 October 2016, 14:25:30 UTC | Version 16.10.10 | 24 October 2016, 14:25:30 UTC |
| 7412dbc | John Chilton | 24 October 2016, 14:25:22 UTC | Prep release. | 24 October 2016, 14:25:22 UTC |
| 7c65ce7 | John Chilton | 24 October 2016, 14:24:18 UTC | Merge pull request #32 from dannon/osx_platform Handle osx when building repo data. | 24 October 2016, 14:24:18 UTC |
| 9151234 | Dannon Baker | 24 October 2016, 14:02:04 UTC | Handle osx when building repo data. | 24 October 2016, 14:02:04 UTC |
| 4d4512e | John Chilton | 21 October 2016, 20:08:00 UTC | Merge remote-tracking branch 'origin/master' into fix_resolver_exports | 21 October 2016, 20:08:00 UTC |
| 515ac0b | John Chilton | 21 October 2016, 20:06:59 UTC | Starting work on 16.10.10 | 21 October 2016, 20:06:59 UTC |
| eb17833 | John Chilton | 21 October 2016, 20:06:24 UTC | Version 16.10.9 | 21 October 2016, 20:06:24 UTC |
| ed46715 | John Chilton | 21 October 2016, 20:06:06 UTC | Prep next release. | 21 October 2016, 20:06:06 UTC |
| 9925727 | John Chilton | 21 October 2016, 20:05:22 UTC | Merge pull request #31 from jmchilton/fix_resolver_exports Fix resolver exports for Conda resolver module. | 21 October 2016, 20:05:22 UTC |
| 13fb2c9 | John Chilton | 21 October 2016, 20:04:05 UTC | Switch mulled namespace to biocontainers to reflect change on quay.io. | 21 October 2016, 20:04:05 UTC |
| ecf5c55 | John Chilton | 18 October 2016, 20:28:30 UTC | Fix resolver exports for Conda resolver module. | 18 October 2016, 20:28:30 UTC |
| 2a3e6e1 | John Chilton | 11 October 2016, 02:31:07 UTC | Merge pull request #28 from galaxyproject/update_20161010 Merge with latest dev. | 11 October 2016, 02:31:07 UTC |
| f64b340 | John Chilton | 10 October 2016, 23:17:18 UTC | Merge pull request #30 from galaxyproject/fix_tests fix tests so it works when no tests specified | 10 October 2016, 23:17:18 UTC |
| 73724f6 | Björn Grüning | 10 October 2016, 20:59:59 UTC | fix tests so it works when no tests specified I guess in the future we should fail when no test is provided. | 10 October 2016, 20:59:59 UTC |
| 82f94dc | Björn Grüning | 10 October 2016, 19:44:14 UTC | Merge pull request #29 from daler/mulled-get-tests support both command-line and import tests in same recipe | 10 October 2016, 19:44:14 UTC |
| f8dc5b7 | daler | 10 October 2016, 16:04:25 UTC | support both command-line and import tests in same recipe | 10 October 2016, 16:04:25 UTC |
| 8342fdf | John Chilton | 10 October 2016, 15:10:17 UTC | Merge with latest dev. | 10 October 2016, 15:10:17 UTC |
| 871c090 | John Chilton | 10 October 2016, 15:02:49 UTC | Starting work on 16.10.9 | 10 October 2016, 15:02:49 UTC |
| a6d69ac | John Chilton | 10 October 2016, 15:02:18 UTC | Version 16.10.8 | 10 October 2016, 15:02:18 UTC |
| 381106a | John Chilton | 10 October 2016, 15:02:04 UTC | Prep 16.10.8. | 10 October 2016, 15:02:04 UTC |
| 3c983e3 | John Chilton | 08 October 2016, 20:48:41 UTC | Merge pull request #27 from bgruening/patch-4 Make use of the build version | 08 October 2016, 20:48:41 UTC |
| 0db99bb | Björn Grüning | 08 October 2016, 20:46:14 UTC | Make use of the build version This should now work: ``` mulled-build build 'samtools=1.3.1--4' --test 'samtools --help' -n biocontainers ``` | 08 October 2016, 20:46:14 UTC |
| 86c0598 | John Chilton | 08 October 2016, 20:00:33 UTC | Merge pull request #26 from daler/py3-mulled py3 compatibility for mulled | 08 October 2016, 20:00:33 UTC |
| 3b23f3d | John Chilton | 08 October 2016, 20:00:23 UTC | Merge pull request #25 from bgruening/patch-3 Include invfile.lua in tarballs | 08 October 2016, 20:00:23 UTC |
| 71098fc | daler | 08 October 2016, 19:51:44 UTC | py3 compatibility for mulled | 08 October 2016, 19:51:44 UTC |
| 42965f4 | Björn Grüning | 08 October 2016, 19:36:21 UTC | Include invfile.lua in tarballs | 08 October 2016, 19:36:21 UTC |
| 48c0660 | John Chilton | 08 October 2016, 13:53:29 UTC | Starting work on 16.10.8 | 08 October 2016, 13:53:29 UTC |
| ca3c77f | John Chilton | 08 October 2016, 13:52:57 UTC | Version 16.10.7 | 08 October 2016, 13:52:57 UTC |
| 22bafd1 | John Chilton | 08 October 2016, 13:52:31 UTC | Merge pull request #24 from galaxyproject/16.10.7 16.10.7 | 08 October 2016, 13:52:31 UTC |
| 2487256 | John Chilton | 08 October 2016, 13:49:25 UTC | Fix bioconda support by adding conda-forge to default conda channels. xref https://github.com/galaxyproject/galaxy/pull/3023 | 08 October 2016, 13:49:25 UTC |
| 1f23662 | John Chilton | 08 October 2016, 13:48:27 UTC | Prep HISTORY.rst for another release. | 08 October 2016, 13:48:27 UTC |
| 136a7d5 | John Chilton | 08 October 2016, 13:45:17 UTC | Merge pull request #23 from bgruening/patch-2 Fix bug in `mulled_build_channel` | 08 October 2016, 13:45:17 UTC |
| 1fbd225 | Björn Grüning | 08 October 2016, 12:16:02 UTC | Fix mulled search! | 08 October 2016, 12:16:02 UTC |
| d9011d1 | Björn Grüning | 07 October 2016, 22:25:59 UTC | Set default BINDS in mulled_build | 07 October 2016, 22:25:59 UTC |
| 70057b5 | Björn Grüning | 07 October 2016, 22:24:09 UTC | Fix Lua strangeness | 07 October 2016, 22:24:09 UTC |
| 8bb806e | Björn Grüning | 07 October 2016, 21:55:05 UTC | Fix bug in `mulled_build_channel` | 07 October 2016, 21:55:05 UTC |
| 418a189 | John Chilton | 07 October 2016, 18:45:32 UTC | Starting work on 16.10.7 | 07 October 2016, 18:45:32 UTC |
| b8d5f9b | John Chilton | 07 October 2016, 18:45:01 UTC | Version 16.10.6 | 07 October 2016, 18:45:01 UTC |
| ce16f3f | John Chilton | 07 October 2016, 18:41:08 UTC | Merge pull request #22 from bgruening/patch-2 New features for mulled | 07 October 2016, 18:41:08 UTC |
| 69b912d | Björn Grüning | 07 October 2016, 18:27:19 UTC | Allow local binds | 07 October 2016, 18:27:19 UTC |
| cb0ef16 | Björn Grüning | 07 October 2016, 18:26:00 UTC | Features and fix * test parameter to override the tests * fix bug which prevents to use this file as tool * allow local file to be build | 07 October 2016, 18:26:00 UTC |
| 858804b | John Chilton | 05 October 2016, 03:57:49 UTC | Starting work on 16.10.6 | 05 October 2016, 03:57:49 UTC |
| 3609313 | John Chilton | 05 October 2016, 03:56:47 UTC | Version 16.10.5 | 05 October 2016, 03:56:47 UTC |
| 64b25fa | John Chilton | 05 October 2016, 03:56:36 UTC | Prep next release. | 05 October 2016, 03:56:36 UTC |
| 9048f65 | John Chilton | 04 October 2016, 14:54:16 UTC | More spelling fixes from @nsoranzo. | 04 October 2016, 14:56:39 UTC |
| 985c70d | John Chilton | 04 October 2016, 14:36:32 UTC | Merge pull request #20 from galaxyproject/doc_update Doc update | 04 October 2016, 14:36:32 UTC |
| aa6a81f | John Chilton | 04 October 2016, 14:35:28 UTC | Spelling and language fixes from @nsoranzo's review or galaxyproject/galaxy#3003. | 04 October 2016, 14:35:28 UTC |
| e22d302 | John Chilton | 04 October 2016, 12:56:41 UTC | CI infrastructure for docstrings. | 04 October 2016, 14:35:18 UTC |
| 5310e8c | John Chilton | 04 October 2016, 01:12:05 UTC | Work on docstrings. This took like an hour and I got nothing done. Docstrings are hard. | 04 October 2016, 14:35:18 UTC |
| 7cdd335 | John Chilton | 04 October 2016, 01:11:47 UTC | Rebuid docs. | 04 October 2016, 14:35:18 UTC |
| 124484c | John Chilton | 04 October 2016, 03:02:50 UTC | Allow hashing CondaTarget class for downstream usage in planemo. | 04 October 2016, 03:12:17 UTC |
| eb37703 | John Chilton | 04 October 2016, 01:48:34 UTC | Starting work on 16.10.5 | 04 October 2016, 01:48:34 UTC |
| 9e59e25 | John Chilton | 04 October 2016, 01:47:46 UTC | Version 16.10.4 | 04 October 2016, 01:47:46 UTC |
| 2b576e8 | John Chilton | 04 October 2016, 01:47:37 UTC | Prep HISTORY.rst for next release. | 04 October 2016, 01:47:37 UTC |
| 73d2bdf | John Chilton | 04 October 2016, 01:35:35 UTC | Fix PyPI for galaxy-lib. | 04 October 2016, 01:35:35 UTC |
| 9000eaa | John Chilton | 04 October 2016, 01:31:22 UTC | Improve robustness of quay_versions in mulled.util. | 04 October 2016, 01:31:22 UTC |
| 4539b3c | John Chilton | 03 October 2016, 22:00:29 UTC | More mulled fixes. | 04 October 2016, 00:54:08 UTC |
| fc2df25 | John Chilton | 03 October 2016, 21:09:08 UTC | Merge pull request #19 from galaxyproject/mulled_v2 Improved Mulled Support | 03 October 2016, 21:09:08 UTC |
| 3c2e3cb | John Chilton | 03 October 2016, 20:03:54 UTC | Improved Mulled support - involucro auto_init and build on-demand resolver for Galaxy. Also bug fix where PyPI package wouldn't actually work. | 03 October 2016, 20:36:19 UTC |
| fa15a45 | John Chilton | 03 October 2016, 16:29:18 UTC | Refactor mull_target toward usage outside CLI. | 03 October 2016, 16:37:42 UTC |
| c9c1953 | John Chilton | 03 October 2016, 14:18:43 UTC | Fix mulled container resolver for 0-requirement tools. | 03 October 2016, 14:18:43 UTC |
| ea64c91 | John Chilton | 03 October 2016, 14:10:56 UTC | Fix not checking multi-target in mulled cache resolver. Mentioned by @mvdbeek here https://github.com/galaxyproject/galaxy/pull/2986#discussion_r81468689. | 03 October 2016, 14:10:56 UTC |
| b9bec08 | John Chilton | 03 October 2016, 13:16:06 UTC | Merge pull request #18 from jmchilton/update_bioconda Add script to update bioconda recipe for galaxy-lib. | 03 October 2016, 13:16:06 UTC |
| e9edb3e | John Chilton | 03 October 2016, 12:44:24 UTC | Add script to update bioconda recipe for galaxy-lib. xref https://github.com/bioconda/bioconda-recipes/pull/2484 | 03 October 2016, 12:44:24 UTC |
| 3989088 | John Chilton | 02 October 2016, 12:33:31 UTC | Starting work on 16.10.4 | 02 October 2016, 12:33:31 UTC |
| 2e368ee | John Chilton | 02 October 2016, 12:32:42 UTC | Version 16.10.3 | 02 October 2016, 12:32:42 UTC |
| 56f067c | John Chilton | 02 October 2016, 12:32:25 UTC | Prep next version. | 02 October 2016, 12:32:25 UTC |
| 1a41dfa | John Chilton | 02 October 2016, 12:31:04 UTC | Merge pull request #17 from galaxyproject/conda_lint Conda improvements (see commits) | 02 October 2016, 12:31:04 UTC |
| 46b00ca | John Chilton | 02 October 2016, 12:27:31 UTC | Make Conda util's is_target_available more general... This will allow it to be reused with Conda target linting downstream. | 02 October 2016, 12:27:31 UTC |
| 96e81e5 | John Chilton | 02 October 2016, 12:27:11 UTC | Fix bug in conda_compat. | 02 October 2016, 12:27:11 UTC |
| 3ba2b96 | John Chilton | 30 September 2016, 10:55:28 UTC | Starting work on 16.10.3 | 30 September 2016, 10:55:28 UTC |
| 63779ea | John Chilton | 30 September 2016, 10:54:49 UTC | Version 16.10.2 | 30 September 2016, 10:54:49 UTC |
| 709cea8 | John Chilton | 30 September 2016, 10:52:16 UTC | Fixup setup.py. Should fix package on PyPI on next release. | 30 September 2016, 10:53:57 UTC |
| cc84654 | John Chilton | 29 September 2016, 20:47:01 UTC | Starting work on 16.10.2 | 29 September 2016, 20:47:01 UTC |
| 0664239 | John Chilton | 29 September 2016, 20:45:57 UTC | Version 16.10.1 | 29 September 2016, 20:45:57 UTC |
| 8934f43 | John Chilton | 29 September 2016, 20:45:44 UTC | Prep the next version. | 29 September 2016, 20:45:44 UTC |
| 5397072 | John Chilton | 29 September 2016, 20:28:14 UTC | Merge pull request #15 from galaxyproject/mulled Mulled support. | 29 September 2016, 20:28:14 UTC |
