| 22af2f7 | John Chilton | 15 March 2017, 13:54:30 UTC | Version 17.5.7 | 15 March 2017, 13:54:30 UTC |
| a3aab72 | John Chilton | 15 March 2017, 12:20:30 UTC | Prep release notes for a new release. | 15 March 2017, 12:20:30 UTC |
| 218e280 | John Chilton | 14 March 2017, 19:17:51 UTC | Merge pull request #54 from jmchilton/eliminate_default_tool_location_fetcher Eliminate DEFAULT_TOOL_LOCATION_FETCHER since it causes import cycles… | 14 March 2017, 19:17:51 UTC |
| 380f219 | John Chilton | 14 March 2017, 19:14:08 UTC | Eliminate DEFAULT_TOOL_LOCATION_FETCHER since it causes import cycles in Galaxy proper. | 14 March 2017, 19:14:08 UTC |
| 62cdeb0 | John Chilton | 13 March 2017, 03:48:55 UTC | Need to sync this directory also now. | 13 March 2017, 03:48:55 UTC |
| 3b28968 | John Chilton | 13 March 2017, 02:20:38 UTC | Add new fetcher script from #52 to list of modules sync'ed with Galaxy. | 13 March 2017, 02:20:38 UTC |
| caca9a8 | John Chilton | 11 March 2017, 15:42:07 UTC | Update default dependency resolver order... Brings in changes from galaxyproject/galaxy#3708. | 11 March 2017, 17:57:30 UTC |
| a409af0 | John Chilton | 11 March 2017, 15:39:51 UTC | Merge pull request #53 from jmchilton/cwl_update Update CWL modules for upstream work in common-workflow-language/galaxy. | 11 March 2017, 15:39:51 UTC |
| 2fff78c | John Chilton | 11 March 2017, 15:33:48 UTC | Update CWL modules for upstream work in common-workflow-language/galaxy. | 11 March 2017, 15:35:34 UTC |
| 6d53fc7 | John Chilton | 10 March 2017, 20:17:14 UTC | Simplify CondaContext.use_local property. Per recommendation of @nsoranzo. | 10 March 2017, 20:17:14 UTC |
| e3c89e1 | John Chilton | 10 March 2017, 18:23:04 UTC | Merge pull request #52 from jmchilton/location_resolution Add location fetching for Galaxy tools. | 10 March 2017, 18:23:04 UTC |
| b9628eb | John Chilton | 09 March 2017, 20:59:24 UTC | Add location fetching for Galaxy tools. This allows Planemo to do some cool stuff like running CWL tools right from dockstore: planemo run dockstore://quay.io/briandoconnor/dockstore-tool-md5sum job.json But would also be useful for linting tools and such from URLs. | 10 March 2017, 01:19:13 UTC |
| 0bd3065 | John Chilton | 09 March 2017, 13:57:46 UTC | Merge pull request #51 from jmchilton/galaxy_updates_20170309 Bring in Galaxy updates. | 09 March 2017, 13:57:46 UTC |
| 92401b0 | John Chilton | 09 March 2017, 13:46:52 UTC | Bring in Galaxy updates. | 09 March 2017, 13:46:52 UTC |
| 245dafc | John Chilton | 02 March 2017, 00:57:28 UTC | Starting work on 17.5.7 | 02 March 2017, 00:57:28 UTC |
| 15cfaa8 | John Chilton | 02 March 2017, 00:56:55 UTC | Version 17.5.6 | 02 March 2017, 00:56:55 UTC |
| 5a78af8 | John Chilton | 01 March 2017, 13:44:37 UTC | Follow up fixes and HISTORY item for #50. | 01 March 2017, 14:29:07 UTC |
| 82a45e3 | Björn Grüning | 28 February 2017, 18:20:43 UTC | Merge pull request #50 from jmchilton/mulled_options Add more flexibility to mulled operations. | 28 February 2017, 18:20:43 UTC |
| fbaf920 | John Chilton | 28 February 2017, 17:42:29 UTC | Add more flexibility to mulled operations. Clean up verbose handling, make images configurable, and such. The major fix is the addition of allowing a specified version of Conda to be installed before building images - this is required to work around certain packages such ncurses not working under osxfs and conda=4.2. This is fixed with Conda 4.3. Likely this bug is related to https://github.com/conda/conda/issues/3494. | 28 February 2017, 18:04:16 UTC |
| d7bf30f | John Chilton | 27 February 2017, 04:08:16 UTC | Starting work on 17.5.6 | 27 February 2017, 04:08:16 UTC |
| b218249 | John Chilton | 27 February 2017, 04:02:19 UTC | Version 17.5.5 | 27 February 2017, 04:02:19 UTC |
| f7ee808 | John Chilton | 27 February 2017, 04:02:08 UTC | Prep 17.5.5. | 27 February 2017, 04:02:08 UTC |
| 1b7bca6 | John Chilton | 27 February 2017, 03:52:08 UTC | Don't try to --use-local to install conda-build - it doesn't work. | 27 February 2017, 03:52:08 UTC |
| 7aed0da | John Chilton | 27 February 2017, 03:03:10 UTC | Starting work on 17.5.5 | 27 February 2017, 03:03:10 UTC |
| 2c0c04a | John Chilton | 27 February 2017, 03:02:37 UTC | Version 17.5.4 | 27 February 2017, 03:02:37 UTC |
| e78124e | John Chilton | 27 February 2017, 03:02:16 UTC | Prep release of 17.5.4. | 27 February 2017, 03:02:16 UTC |
| 36b2e65 | John Chilton | 27 February 2017, 02:58:17 UTC | Touch up problem with bdacc4d98245411786533bd5c37d5dfa74340e1b. | 27 February 2017, 02:58:17 UTC |
| 3c28e93 | John Chilton | 24 February 2017, 18:27:11 UTC | Update default miniconda install path. Planemo is currently installing miniconda3 to $HOME/miniconda2. | 24 February 2017, 18:29:47 UTC |
| bdacc4d | John Chilton | 24 February 2017, 17:46:00 UTC | If initializing Conda with local packages enabled, ensure conda-build is installed. This is required by Conda. Also provide a flag to force this behavior, when using planemo conda-build should always be installed I think - it is a developer tool after all. | 24 February 2017, 18:29:47 UTC |
| 1a6c532 | John Chilton | 24 February 2017, 13:21:12 UTC | Starting work on 17.5.4 | 24 February 2017, 13:21:12 UTC |
| 8823def | John Chilton | 24 February 2017, 13:20:35 UTC | Version 17.5.3 | 24 February 2017, 13:20:35 UTC |
| e191233 | John Chilton | 24 February 2017, 13:19:39 UTC | Prep release of 17.5.3. | 24 February 2017, 13:19:39 UTC |
| 7ef8e7f | John Chilton | 24 February 2017, 13:16:40 UTC | Merge branch 'use_local' | 24 February 2017, 13:16:40 UTC |
| edf0c76 | John Chilton | 24 February 2017, 13:15:44 UTC | Swap CondaContext argument order as recommended by @nsoranzo. | 24 February 2017, 13:15:44 UTC |
| 5ca2847 | John Chilton | 24 February 2017, 12:01:23 UTC | Allow conda to be configured to use locally built packages. This is required to run tests and such with new and updated local packages before they have been published. | 24 February 2017, 12:01:23 UTC |
| e8657f5 | John Chilton | 23 February 2017, 20:43:57 UTC | Merge pull request #46 from jmchilton/update_dev_latest Update to the latest galaxy-dev. | 23 February 2017, 20:43:57 UTC |
| 5479c1d | John Chilton | 22 February 2017, 20:59:07 UTC | Update to the latest galaxy-dev. | 22 February 2017, 20:59:07 UTC |
| 1f905f1 | John Chilton | 21 February 2017, 20:47:44 UTC | Starting work on 17.5.3 | 21 February 2017, 20:47:44 UTC |
| 10a43c6 | John Chilton | 21 February 2017, 20:47:04 UTC | Version 17.5.2 | 21 February 2017, 20:47:04 UTC |
| b77e354 | John Chilton | 21 February 2017, 20:37:17 UTC | Prep another new version. | 21 February 2017, 20:46:49 UTC |
| cd95646 | John Chilton | 21 February 2017, 20:35:47 UTC | Merge pull request #45 from jmchilton/quiet Implement quiet arg on a few conda utility functions. | 21 February 2017, 20:35:47 UTC |
| ad8272e | John Chilton | 21 February 2017, 20:29:58 UTC | Implement quiet arg on a few conda utility functions. Need to force output to /dev/null to fix https://github.com/galaxyproject/planemo/issues/636. | 21 February 2017, 20:29:58 UTC |
| 7ce98eb | John Chilton | 21 February 2017, 15:03:53 UTC | Starting work on 17.5.2 | 21 February 2017, 15:03:53 UTC |
| c373106 | John Chilton | 21 February 2017, 15:00:58 UTC | Version 17.5.1 | 21 February 2017, 15:00:58 UTC |
| eb0ba92 | John Chilton | 21 February 2017, 15:00:20 UTC | Prep 17.5.1. | 21 February 2017, 15:00:20 UTC |
| f250e42 | John Chilton | 21 February 2017, 14:58:34 UTC | Merge pull request #44 from jmchilton/lint_update Various tool linting improvements. | 21 February 2017, 14:58:34 UTC |
| d7cdd38 | John Chilton | 21 February 2017, 14:38:43 UTC | Linting - match output definition names to actual outputs. | 21 February 2017, 14:52:12 UTC |
| 53c95ef | John Chilton | 21 February 2017, 14:38:23 UTC | Linting - check that outputs have names. | 21 February 2017, 14:52:12 UTC |
| 5929a21 | John Chilton | 21 February 2017, 14:09:46 UTC | Make linting a little more Galaxy profile version aware. | 21 February 2017, 14:52:11 UTC |
| 2c9ac98 | John Chilton | 21 February 2017, 13:27:48 UTC | Handle assert_command as a valid test. Fixes galaxyproject/planemo#260. | 21 February 2017, 13:27:48 UTC |
| 8ea5f71 | John Chilton | 16 February 2017, 18:39:07 UTC | Starting work on 17.5.1 | 16 February 2017, 18:39:07 UTC |
| df778aa | John Chilton | 16 February 2017, 18:38:35 UTC | Version 17.5.0 | 16 February 2017, 18:38:35 UTC |
| d67aad3 | John Chilton | 16 February 2017, 17:13:32 UTC | And another fix. | 16 February 2017, 17:13:32 UTC |
| a92b4cd | John Chilton | 16 February 2017, 16:43:52 UTC | Another fix thanks to :eagle::eyes: | 16 February 2017, 16:43:52 UTC |
| 3bd9c95 | John Chilton | 16 February 2017, 16:25:20 UTC | Revise enviornment-less Conda install commands. Last attempt was broken. | 16 February 2017, 16:26:25 UTC |
| 49346b4 | John Chilton | 16 February 2017, 16:09:23 UTC | Merge pull request #42 from jmchilton/update_1705 Update to latest dev (up version to 17.05). | 16 February 2017, 16:09:23 UTC |
| 0a3299b | John Chilton | 16 February 2017, 16:07:11 UTC | Merge pull request #41 from jmchilton/allow_global_installs Allow empty environment names during Conda install. | 16 February 2017, 16:07:11 UTC |
| 277e37a | John Chilton | 16 February 2017, 16:06:38 UTC | lint fixes | 16 February 2017, 16:06:38 UTC |
| 6aeaa35 | John Chilton | 16 February 2017, 15:30:40 UTC | Update to latest dev (up version to 17.05). | 16 February 2017, 15:43:59 UTC |
| f15ce08 | John Chilton | 16 February 2017, 15:33:21 UTC | Fix comment spelling thanks to @nsoranzo :eagle::eyes:. | 16 February 2017, 15:33:21 UTC |
| 8ccbc70 | John Chilton | 16 February 2017, 15:25:02 UTC | Allow empty environment names during Conda install. Library function capability for downstream Planemo work on Conda tutorials. | 16 February 2017, 15:25:02 UTC |
| 32f0d2d | John Chilton | 23 January 2017, 19:35:29 UTC | Starting work on 17.1.3 | 23 January 2017, 19:35:29 UTC |
| 128e8bb | John Chilton | 23 January 2017, 19:35:02 UTC | Version 17.1.2 | 23 January 2017, 19:35:02 UTC |
| 2558462 | John Chilton | 23 January 2017, 19:34:56 UTC | Prep next release. | 23 January 2017, 19:34:56 UTC |
| 79c71bb | John Chilton | 23 January 2017, 19:30:57 UTC | Merge pull request #40 from jmchilton/update_to_last_1701 Update to last 17.01 commit. | 23 January 2017, 19:30:57 UTC |
| 26323ba | John Chilton | 23 January 2017, 19:29:53 UTC | Fixes for linting and such. | 23 January 2017, 19:29:53 UTC |
| 5665ee3 | John Chilton | 23 January 2017, 17:16:34 UTC | Update to last 17.01 commit. Fairly substantial changes to dependency resolution in general and Conda resolution specifically. | 23 January 2017, 17:16:34 UTC |
| d1c1602 | Björn Grüning | 03 January 2017, 23:53:42 UTC | Merge pull request #39 from mvdbeek/mulled_mount_test_files Add possibility to mount in test-files during conda testing | 03 January 2017, 23:53:42 UTC |
| 1b59eea | mvdbeek | 02 January 2017, 19:36:22 UTC | Skip test-files that do not exist | 02 January 2017, 19:38:18 UTC |
| a1ae949 | mvdbeek | 02 January 2017, 15:11:13 UTC | Add possibility to mount in test-files during conda testing | 02 January 2017, 17:28:51 UTC |
| 7b37ae3 | John Chilton | 14 December 2016, 13:20:39 UTC | Starting work on 17.1.2 | 14 December 2016, 13:20:39 UTC |
| 8206c52 | John Chilton | 14 December 2016, 13:20:06 UTC | Version 17.1.1 | 14 December 2016, 13:20:06 UTC |
| 738b8b9 | John Chilton | 14 December 2016, 13:19:49 UTC | Prep release of 17.1.1 to fix Planemo. | 14 December 2016, 13:19:49 UTC |
| bf550f4 | John Chilton | 14 December 2016, 13:17:46 UTC | Merge pull request #38 from jmchilton/shell_restore Revert commands.shell changes from galaxyproject/galaxy#3129. | 14 December 2016, 13:17:45 UTC |
| 3d686a7 | John Chilton | 13 December 2016, 18:28:49 UTC | Revert commands.shell changes from galaxyproject/galaxy#3129. It seems like people prefer to see the interactive shell https://github.com/galaxyproject/galaxy/issues/3259. See follow up here https://github.com/galaxyproject/galaxy/issues/3309. This also fixes an issue caused by the change of the constructor interface for CommandLineException in galaxyproject/galaxy#3129. | 13 December 2016, 18:32:41 UTC |
| 58d413b | John Chilton | 12 December 2016, 14:25:27 UTC | Starting work on 17.1.1 | 12 December 2016, 14:25:27 UTC |
| 929bbe2 | John Chilton | 12 December 2016, 14:24:58 UTC | Version 17.1.0 | 12 December 2016, 14:24:58 UTC |
| 4d2c3d0 | John Chilton | 12 December 2016, 14:24:33 UTC | Prep next release. | 12 December 2016, 14:24:33 UTC |
| 29a5357 | John Chilton | 12 December 2016, 14:22:21 UTC | Merge pull request #37 from galaxyproject/update_20161212 Update to latest galaxy dev commit. | 12 December 2016, 14:22:21 UTC |
| a27bf44 | John Chilton | 12 December 2016, 13:54:36 UTC | Another flake8 fix. | 12 December 2016, 13:54:36 UTC |
| cbdd73b | John Chilton | 12 December 2016, 13:48:42 UTC | Update to latest galaxy dev commit. | 12 December 2016, 13:48:42 UTC |
| 6123520 | John Chilton | 09 December 2016, 20:06:48 UTC | Merge pull request #36 from galaxyproject/mulled-quite-install Install packages quietly ... do not show the progressbar | 09 December 2016, 20:06:48 UTC |
| 6fbf652 | Björn Grüning | 09 December 2016, 19:38:55 UTC | Install packages quietly ... do not show the progressbar | 09 December 2016, 19:38:55 UTC |
| 2a18f10 | John Chilton | 14 November 2016, 19:23:00 UTC | Merge pull request #35 from jmchilton/latest_dev_20161114 Bring in one more dev change. | 14 November 2016, 19:23:00 UTC |
| b670d29 | John Chilton | 14 November 2016, 17:42:28 UTC | Bring in one more dev change. | 14 November 2016, 17:42:28 UTC |
| df9efed | John Chilton | 14 November 2016, 17:41:05 UTC | Merge pull request #34 from jmchilton/latest_dev_20161114 Update to latest galaxy-dev. | 14 November 2016, 17:41:05 UTC |
| 856c24e | John Chilton | 14 November 2016, 14:36:58 UTC | Update to latest galaxy-dev. Requires bringing in image_util from galaxy.util. | 14 November 2016, 17:32:09 UTC |
| c2d90ab | John Chilton | 14 November 2016, 03:28:01 UTC | Merge pull request #33 from galaxyproject/mulled_error_code Mulled error code | 14 November 2016, 03:28:01 UTC |
| 8c276c0 | Bjoern Gruening | 12 November 2016, 18:24:02 UTC | fix lint errors all over | 12 November 2016, 18:24:02 UTC |
| 3b319f4 | Björn Grüning | 12 November 2016, 15:48:55 UTC | fix lint error | 12 November 2016, 15:48:55 UTC |
| b18d847 | Björn Grüning | 12 November 2016, 15:25:59 UTC | Tool now return the error code obtained by subprocess | 12 November 2016, 15:25:59 UTC |
| b11056f | Björn Grüning | 12 November 2016, 15:24:38 UTC | Return error code to downstream | 12 November 2016, 15:24:38 UTC |
| ca3ea45 | Martin Cech | 24 October 2016, 14:29:15 UTC | fix planemo copypasta | 24 October 2016, 14:29:15 UTC |
| 61faf50 | John Chilton | 24 October 2016, 14:27:30 UTC | Starting work on 16.10.11 | 24 October 2016, 14:27:30 UTC |
| a589695 | John Chilton | 24 October 2016, 14:25:30 UTC | Version 16.10.10 | 24 October 2016, 14:25:30 UTC |
| 7412dbc | John Chilton | 24 October 2016, 14:25:22 UTC | Prep release. | 24 October 2016, 14:25:22 UTC |
| 7c65ce7 | John Chilton | 24 October 2016, 14:24:18 UTC | Merge pull request #32 from dannon/osx_platform Handle osx when building repo data. | 24 October 2016, 14:24:18 UTC |
| 9151234 | Dannon Baker | 24 October 2016, 14:02:04 UTC | Handle osx when building repo data. | 24 October 2016, 14:02:04 UTC |
| 4d4512e | John Chilton | 21 October 2016, 20:08:00 UTC | Merge remote-tracking branch 'origin/master' into fix_resolver_exports | 21 October 2016, 20:08:00 UTC |
| 515ac0b | John Chilton | 21 October 2016, 20:06:59 UTC | Starting work on 16.10.10 | 21 October 2016, 20:06:59 UTC |
