| 7973a56 | Björn Grüning | 28 April 2019, 08:42:06 UTC | Merge pull request #149 from galaxyproject/update_miniconda update miniconda version | 28 April 2019, 08:42:06 UTC |
| 8389b4e | Björn Grüning | 27 April 2019, 11:58:12 UTC | update miniconda version | 27 April 2019, 11:58:12 UTC |
| 32f4bc9 | John Chilton | 13 March 2019, 19:46:00 UTC | Merge pull request #146 from mr-c/bye_galaxy_web_stack galaxy.web.stack doesn't exist | 13 March 2019, 19:46:00 UTC |
| 56ac7aa | Michael R. Crusoe | 10 March 2019, 09:05:56 UTC | galaxy.web.stack doesn't exist | 10 March 2019, 09:05:56 UTC |
| a6a9f9a | John Chilton | 03 March 2019, 19:19:19 UTC | Starting work on 19.5.2 | 03 March 2019, 19:19:19 UTC |
| c265f19 | John Chilton | 03 March 2019, 19:18:53 UTC | Version 19.5.1 | 03 March 2019, 19:18:53 UTC |
| ba7c490 | John Chilton | 03 March 2019, 19:14:20 UTC | Merge pull request #144 from jmchilton/get_filename Restore get_filename parameter to galaxy.tools.verify. | 03 March 2019, 19:14:20 UTC |
| d750fce | John Chilton | 03 March 2019, 17:48:54 UTC | Restore get_filename parameter to galaxy.tools.verify. Used by Planemo. | 03 March 2019, 17:48:54 UTC |
| 22e14a5 | John Chilton | 01 March 2019, 17:45:10 UTC | Starting work on 19.5.1 | 01 March 2019, 17:45:10 UTC |
| ef64a11 | John Chilton | 01 March 2019, 17:44:42 UTC | Version 19.5.0 | 01 March 2019, 17:44:42 UTC |
| f905f88 | John Chilton | 01 March 2019, 17:44:05 UTC | Prep next release. | 01 March 2019, 17:44:05 UTC |
| 07b9694 | Nicola Soranzo | 01 March 2019, 17:34:17 UTC | Merge pull request #143 from jmchilton/dev_sync Dev sync | 01 March 2019, 17:34:17 UTC |
| b5acdf0 | John Chilton | 01 March 2019, 16:12:54 UTC | Add test_utils to testing sync. | 01 March 2019, 16:13:40 UTC |
| af5e287 | John Chilton | 01 March 2019, 16:06:15 UTC | Follow up and eliminating web stack. | 01 March 2019, 16:13:40 UTC |
| 1647dfc | John Chilton | 01 March 2019, 16:06:03 UTC | Sync against latest galaxy dev branch. | 01 March 2019, 16:13:27 UTC |
| 9eb5a27 | John Chilton | 01 March 2019, 15:59:08 UTC | PEP8 fix. | 01 March 2019, 15:59:08 UTC |
| 72fb363 | John Chilton | 01 March 2019, 15:58:35 UTC | Merge pull request #142 from jmchilton/web_stack Fix import error with newer galaxy.web.stack. | 01 March 2019, 15:58:35 UTC |
| 1b09bbd | John Chilton | 08 February 2019, 23:11:41 UTC | Fix import error with newer galaxy.web.stack. | 01 March 2019, 15:36:52 UTC |
| f799eff | Nicola Soranzo | 02 January 2019, 20:32:06 UTC | Starting work on 18.9.3 | 02 January 2019, 20:32:06 UTC |
| 656fb80 | Nicola Soranzo | 02 January 2019, 19:22:35 UTC | Version 18.9.2 | 02 January 2019, 19:51:22 UTC |
| 4e29d24 | Nicola Soranzo | 02 January 2019, 19:51:06 UTC | Prep next release | 02 January 2019, 19:51:22 UTC |
| 4391914 | Nicola Soranzo | 02 January 2019, 19:21:34 UTC | Fix typos | 02 January 2019, 19:21:34 UTC |
| 5bcd654 | Nicola Soranzo | 28 November 2018, 22:54:11 UTC | Merge pull request #139 from nsoranzo/sudo_false Remove deprecated ``sudo: false`` from .travis.yml | 28 November 2018, 22:54:11 UTC |
| 19d5c46 | Nicola Soranzo | 28 November 2018, 00:50:24 UTC | Remove deprecated ``sudo: false`` from .travis.yml See https://blog.travis-ci.com/2018-11-19-required-linux-infrastructure-migration | 28 November 2018, 00:50:24 UTC |
| bb6f770 | Nicola Soranzo | 29 October 2018, 19:07:24 UTC | Merge pull request #138 from jmchilton/lint_update_2 Sync with the latest galaxy-dev... | 29 October 2018, 19:07:24 UTC |
| 8b812e2 | Nicola Soranzo | 29 October 2018, 14:00:21 UTC | Fix broken galaxy/tools/verify/interactor.py A broken merge discarded the changes in https://github.com/galaxyproject/galaxy/commit/8ed19a3a09df9b66266f66bc53e504c781ae524d Also the calls to `stage_data_async()` where broken in https://github.com/galaxyproject/galaxy-lib/pull/137 , so specify keyword argument for good measure. | 29 October 2018, 14:00:26 UTC |
| a05ccce | John Chilton | 26 October 2018, 18:28:46 UTC | Sync with the latest galaxy-dev... | 26 October 2018, 18:41:43 UTC |
| ac73d22 | John Chilton | 26 October 2018, 18:06:06 UTC | Merge pull request #137 from martenson/allow-path-paste implement option for uploading local test data | 26 October 2018, 18:06:06 UTC |
| c37da30 | Martin Cech | 26 October 2018, 16:37:16 UTC | fix linting | 26 October 2018, 16:37:16 UTC |
| 250f5ba | Martin Cech | 26 October 2018, 16:30:46 UTC | extend to composite datasets, remove debugs, refactor | 26 October 2018, 16:30:46 UTC |
| 8e7dcad | Martin Cech | 25 October 2018, 17:47:48 UTC | implement option for uploading local test data this option needs the target Galaxy to enable option with the same name | 25 October 2018, 17:47:48 UTC |
| aea4731 | John Chilton | 15 September 2018, 19:11:49 UTC | Starting work on 18.9.2 | 15 September 2018, 19:11:49 UTC |
| 7a12a16 | John Chilton | 15 September 2018, 19:11:23 UTC | Version 18.9.1 | 15 September 2018, 19:11:23 UTC |
| 4eca838 | John Chilton | 15 September 2018, 19:11:04 UTC | Prep next release. | 15 September 2018, 19:11:19 UTC |
| c52ad81 | John Chilton | 15 September 2018, 19:09:51 UTC | Merge pull request #136 from galaxyproject/channel_cleanup channel cleanup | 15 September 2018, 19:09:51 UTC |
| 82a8952 | Björn Grüning | 15 September 2018, 15:48:18 UTC | improve help text | 15 September 2018, 15:48:18 UTC |
| 747ac24 | Björn Grüning | 15 September 2018, 15:47:28 UTC | thanks Nicola | 15 September 2018, 15:47:28 UTC |
| b14a38f | Björn Grüning | 15 September 2018, 15:45:38 UTC | spelling mistake | 15 September 2018, 15:45:38 UTC |
| 77cc709 | Björn Grüning | 15 September 2018, 13:06:11 UTC | update docs | 15 September 2018, 13:06:11 UTC |
| f2b4fa2 | Bjoern Gruening | 15 September 2018, 12:44:20 UTC | channel cleanup | 15 September 2018, 12:44:20 UTC |
| f261772 | John Chilton | 14 September 2018, 14:48:36 UTC | Starting work on 18.9.1 | 14 September 2018, 14:48:36 UTC |
| b4cc0c7 | John Chilton | 14 September 2018, 14:48:11 UTC | Version 18.9.0 | 14 September 2018, 14:48:11 UTC |
| 81d4cce | John Chilton | 14 September 2018, 14:44:55 UTC | Prepare next release. | 14 September 2018, 14:46:05 UTC |
| fa343bd | John Chilton | 14 September 2018, 13:49:17 UTC | Merge pull request #132 from galaxyproject/conda_channel_mess change channel priority | 14 September 2018, 13:49:17 UTC |
| dfa5306 | John Chilton | 13 September 2018, 17:41:01 UTC | Merge pull request #135 from galaxyproject/update_to_galaxy_1809 Update to Galaxy 18.09. | 13 September 2018, 17:41:01 UTC |
| 96c083f | John Chilton | 13 September 2018, 17:12:04 UTC | Update to Galaxy 18.09. | 13 September 2018, 17:12:04 UTC |
| 4db7f39 | John Chilton | 13 September 2018, 17:00:06 UTC | Unicodify only once in mulled cmd handling. Version of this patch that was applied to galaxy. | 13 September 2018, 17:00:06 UTC |
| 080d672 | John Chilton | 13 September 2018, 15:35:27 UTC | Merge pull request #133 from galaxyproject/galaxy_update_last_1805 Bring in the latest 18.05, add XSD. | 13 September 2018, 15:35:27 UTC |
| fec5208 | John Chilton | 13 September 2018, 15:16:54 UTC | Merge pull request #134 from nsoranzo/fixes Fixes | 13 September 2018, 15:16:54 UTC |
| 5456847 | Nicola Soranzo | 13 September 2018, 15:10:24 UTC | Allow specifying `make_tool` also with newer cwltool | 13 September 2018, 15:10:24 UTC |
| 1f0cd6a | John Chilton | 13 September 2018, 14:57:00 UTC | Bring in the latest 18.05, add XSD. | 13 September 2018, 14:57:00 UTC |
| eabbe2e | Nicola Soranzo | 13 September 2018, 13:32:09 UTC | Removed unused `RuntimeContext` import | 13 September 2018, 13:32:09 UTC |
| d7d4975 | Nicola Soranzo | 13 September 2018, 10:47:39 UTC | Simplify stdio linter `_lint_level()` was missing `fatal_oom` as possible level, causing linting failures, e.g.: https://travis-ci.org/galaxyproteomics/tools-galaxyp/jobs/427283680#L573 Therefore remove checks already tested by the Planemo `tool_xsd` linter. | 13 September 2018, 10:57:17 UTC |
| dff3ae2 | Bjoern Gruening | 12 September 2018, 21:50:45 UTC | change channel priority | 12 September 2018, 21:50:45 UTC |
| 9cb0e7b | John Chilton | 12 September 2018, 18:27:19 UTC | Starting work on 18.5.16 | 12 September 2018, 18:27:19 UTC |
| f0f1f9f | John Chilton | 12 September 2018, 18:25:55 UTC | Version 18.5.15 | 12 September 2018, 18:25:55 UTC |
| abb4d3f | John Chilton | 12 September 2018, 18:25:49 UTC | Prep next release. | 12 September 2018, 18:25:49 UTC |
| c68f729 | John Chilton | 12 September 2018, 18:23:16 UTC | Another update to support newer cwltool compatiblity. | 12 September 2018, 18:24:46 UTC |
| a0c93de | John Chilton | 12 September 2018, 15:10:33 UTC | Starting work on 18.5.15 | 12 September 2018, 15:10:33 UTC |
| 5d5ad4a | John Chilton | 12 September 2018, 15:10:00 UTC | Version 18.5.14 | 12 September 2018, 15:10:00 UTC |
| 83f7a12 | John Chilton | 12 September 2018, 15:09:43 UTC | Prep next release. | 12 September 2018, 15:09:43 UTC |
| 1826344 | Björn Grüning | 04 September 2018, 18:14:54 UTC | Merge pull request #130 from pcm32/patch-1 Makes --test optional for involucro | 04 September 2018, 18:14:54 UTC |
| 09c1d93 | Pablo Moreno | 04 September 2018, 14:25:38 UTC | Missing bracket | 04 September 2018, 14:25:38 UTC |
| d6146c7 | Pablo Moreno | 04 September 2018, 14:14:26 UTC | Makes --test optional for involucro | 04 September 2018, 14:14:26 UTC |
| 892dcf9 | John Chilton | 04 September 2018, 12:39:59 UTC | Merge pull request #129 from nsoranzo/support_cwltool_1.0.20180611202326 Add support for cwltool 1.0.20180611202326 | 04 September 2018, 12:39:59 UTC |
| 5d5ab4d | Nicola Soranzo | 31 August 2018, 19:22:18 UTC | Add support for cwltool 1.0.20180611202326 | 31 August 2018, 19:53:56 UTC |
| dca663c | Björn Grüning | 24 July 2018, 14:11:52 UTC | Merge pull request #121 from natefoo/lint-name Support passing a name through to the lint context so that error messages can be more useful | 24 July 2018, 14:11:52 UTC |
| d0170c5 | Björn Grüning | 24 July 2018, 14:11:01 UTC | Merge pull request #128 from nsoranzo/test_output_name_error Report a lint error if test output name does not match tool outputs | 24 July 2018, 14:11:01 UTC |
| 35dc456 | Nicola Soranzo | 16 July 2018, 09:26:39 UTC | Report a lint error if test output name does not match tool outputs not a warning. Fix https://github.com/galaxyproject/planemo/issues/858 . | 16 July 2018, 09:27:50 UTC |
| a6935b9 | Nate Coraor | 26 June 2018, 17:51:49 UTC | Support passing a name through to the lint context so that error messages can be more useful | 26 June 2018, 17:51:49 UTC |
| 11c46b7 | John Chilton | 23 May 2018, 12:19:52 UTC | Starting work on 18.5.14 | 23 May 2018, 12:19:52 UTC |
| 1b1a6b8 | John Chilton | 23 May 2018, 12:19:27 UTC | Version 18.5.13 | 23 May 2018, 12:19:27 UTC |
| a0f7203 | John Chilton | 23 May 2018, 12:19:01 UTC | Prep next version. | 23 May 2018, 12:19:01 UTC |
| 82f3b91 | John Chilton | 23 May 2018, 12:17:55 UTC | Merge pull request #120 from jmchilton/explicit_galaxy_style_collection Add support for explicit Galaxy-style collections as test inputs. | 23 May 2018, 12:17:55 UTC |
| 0682855 | John Chilton | 23 May 2018, 10:51:56 UTC | Add support for explicit Galaxy-style collections as test inputs. There is some support for a direct list syntax already from the CWL work, but it doesn't support explicit element identifiers or collection type annotation. This format should feel a bit more like Galaxy tool test collection inputs I think. | 23 May 2018, 10:51:56 UTC |
| 6db297c | John Chilton | 23 May 2018, 10:48:06 UTC | Merge pull request #119 from galaxyproject/filetype add filetype support to the workflow-job.yml test script | 23 May 2018, 10:48:06 UTC |
| 46be221 | Björn Grüning | 23 May 2018, 09:55:24 UTC | add filetype support to the workflow-job.yml test script | 23 May 2018, 09:55:24 UTC |
| 3f37a5c | John Chilton | 22 May 2018, 15:32:06 UTC | Starting work on 18.5.13 | 22 May 2018, 15:32:06 UTC |
| 2cb5f31 | John Chilton | 22 May 2018, 15:31:35 UTC | Version 18.5.12 | 22 May 2018, 15:31:35 UTC |
| cb06532 | John Chilton | 22 May 2018, 15:30:44 UTC | Prep release. | 22 May 2018, 15:31:27 UTC |
| 02d9f7f | John Chilton | 22 May 2018, 15:29:34 UTC | Merge pull request #118 from jmchilton/uri_test_data Allow URIs in test data inputs. | 22 May 2018, 15:29:34 UTC |
| 87c4ec6 | John Chilton | 22 May 2018, 15:19:17 UTC | Allow URIs in test data inputs. | 22 May 2018, 15:19:44 UTC |
| da3497c | John Chilton | 18 May 2018, 15:15:31 UTC | Merge pull request #116 from jmchilton/py3fixmulled Python 3 fix for mulled container resolver. | 18 May 2018, 15:15:31 UTC |
| e5fd913 | John Chilton | 18 May 2018, 15:06:01 UTC | Python 3 fix for mulled container resolver. | 18 May 2018, 15:06:01 UTC |
| 9ad63b2 | John Chilton | 16 May 2018, 16:52:40 UTC | Starting work on 18.5.12 | 16 May 2018, 16:52:40 UTC |
| 6646bec | John Chilton | 16 May 2018, 16:52:04 UTC | Version 18.5.11 | 16 May 2018, 16:52:04 UTC |
| e2ff498 | John Chilton | 16 May 2018, 16:49:23 UTC | Merge pull request #115 from jmchilton/cwl_parse_req Rough pass at parsing CWL software requirements to Galaxy requirements. | 16 May 2018, 16:49:23 UTC |
| 7863464 | John Chilton | 16 May 2018, 16:03:17 UTC | Rough pass at parsing CWL software requirements to Galaxy requirements. Required to fix various Planemo conda functionality for CWL tools (linting Conda requirements, biocontainers, conda_install, conda_env, etc...). | 16 May 2018, 16:05:02 UTC |
| 4b58ea5 | John Chilton | 12 May 2018, 05:01:40 UTC | Merge pull request #114 from galaxyproject/quiet --quiet = Do not display progress bar. | 12 May 2018, 05:01:40 UTC |
| c0d15df | Björn Grüning | 11 May 2018, 20:58:48 UTC | --quiet = Do not display progress bar. | 11 May 2018, 20:58:48 UTC |
| 7336674 | John Chilton | 11 May 2018, 00:09:33 UTC | Starting work on 18.5.11 | 11 May 2018, 00:09:33 UTC |
| a5210a2 | John Chilton | 11 May 2018, 00:08:58 UTC | Version 18.5.10 | 11 May 2018, 00:08:58 UTC |
| 1e9c14a | John Chilton | 11 May 2018, 00:08:50 UTC | Prep the next release. | 11 May 2018, 00:08:50 UTC |
| 91c001d | John Chilton | 10 May 2018, 23:41:26 UTC | Merge pull request #113 from jmchilton/docker_fixes Fix for docker_util logs_command used by Planemo. | 10 May 2018, 23:41:26 UTC |
| e203831 | John Chilton | 10 May 2018, 23:26:12 UTC | Fix for docker_util logs_command used by Planemo. | 10 May 2018, 23:26:12 UTC |
| 14360da | John Chilton | 07 May 2018, 16:45:39 UTC | Starting work on 18.5.10 | 07 May 2018, 16:45:39 UTC |
| cf0707e | John Chilton | 07 May 2018, 16:45:13 UTC | Version 18.5.9 | 07 May 2018, 16:45:13 UTC |
| 4d2cb6a | John Chilton | 07 May 2018, 16:44:46 UTC | Prep next release. | 07 May 2018, 16:45:05 UTC |
| 5758046 | John Chilton | 07 May 2018, 16:43:55 UTC | Merge pull request #112 from jmchilton/cwl_lint_1.0 Update cwl tool linting to 1.0. | 07 May 2018, 16:43:55 UTC |
| 34d7bc4 | John Chilton | 05 March 2018, 02:45:24 UTC | Update cwl tool linting to 1.0. | 07 May 2018, 15:25:37 UTC |
