| 28e1692 | Julien Vitay | 25 June 2014, 09:00:39 UTC | Added simplification of explicit equations. | 25 June 2014, 09:00:39 UTC |
| be77642 | Julien Vitay | 24 June 2014, 13:00:37 UTC | Some distributions do not have the Numpy headers at a standard location. | 24 June 2014, 13:00:37 UTC |
| def5851 | Julien Vitay | 24 June 2014, 09:28:58 UTC | doc: documented unless_refractory | 24 June 2014, 09:28:58 UTC |
| 5eaa872 | Julien Vitay | 24 June 2014, 09:18:48 UTC | Fixed behavior of refractory period. ADded the unless-Refractory keyword. | 24 June 2014, 09:18:48 UTC |
| 97ab642 | Julien Vitay | 23 June 2014, 19:29:40 UTC | Network time is also reset. | 23 June 2014, 19:29:40 UTC |
| 9634291 | Julien Vitay | 23 June 2014, 19:25:01 UTC | reset() now completely resets the parameters and variables to the state before compile(). | 23 June 2014, 19:25:01 UTC |
| f592571 | Julien Vitay | 23 June 2014, 18:52:20 UTC | Tried removing the initialization of values. Maybe too fast... | 23 June 2014, 18:52:20 UTC |
| 970988e | Julien Vitay | 23 June 2014, 16:10:50 UTC | The values of all parameters and variables are now directly transferred to C++ at compilation time. The classes default to false, 0 or 0.0 for the initial values. This saves up some recompilation time and will allow a better reset. | 23 June 2014, 16:10:50 UTC |
| 1b0817f | Julien Vitay | 23 June 2014, 12:11:57 UTC | Support for implicit Euler on systems of linear equations. | 23 June 2014, 12:11:57 UTC |
| 4751f6b | Julien Vitay | 22 June 2014, 16:36:46 UTC | Optimized the generated code. | 22 June 2014, 16:36:46 UTC |
| 2b7bdae | Julien Vitay | 22 June 2014, 15:32:11 UTC | Started implementing the full implicit method. | 22 June 2014, 15:32:11 UTC |
| b237a11 | Julien Vitay | 22 June 2014, 14:03:03 UTC | Evaluation of equations is now split into pre- and post-odes parts. The evaluation of coupled ODEs is now correct. | 22 June 2014, 14:03:03 UTC |
| 867b092 | Julien Vitay | 21 June 2014, 16:44:43 UTC | ODEs are now evaluated concurrently. Problem: non-ODEs are evaultes too late, for example: dmp/dt = ... r = pos(mp) where r takes the old value of mp. Solution: split the variables into pre-ODE, ODE, post-ODE | 21 June 2014, 16:44:43 UTC |
| 4977372 | Julien Vitay | 21 June 2014, 15:26:55 UTC | Merge branch 'develop' into implicit | 21 June 2014, 15:26:55 UTC |
| 5c62ed3 | Julien Vitay | 21 June 2014, 15:23:24 UTC | CSR now defines size (number of post neurons) and nb_synapses (total number of synapses. | 21 June 2014, 15:23:24 UTC |
| 5a4df0f | Julien Vitay | 21 June 2014, 15:08:26 UTC | ODEs are now solved synchornously. | 21 June 2014, 15:08:26 UTC |
| 378879f | Julien Vitay | 20 June 2014, 12:25:20 UTC | Started version 4.2.2 | 20 June 2014, 12:25:20 UTC |
| 70b7f31 | Julien Vitay | 20 June 2014, 10:52:22 UTC | Merge branch 'implicit' into develop Conflicts: ANNarchy/parser/Analyser.py | 20 June 2014, 10:52:22 UTC |
| dbc5e71 | Julien Vitay | 20 June 2014, 07:02:06 UTC | Splitted the file ANalyser.py into multiple files for clarity. | 20 June 2014, 07:02:06 UTC |
| 8559690 | Helge Dinkelbach | 19 June 2014, 16:20:05 UTC | pre-event learning components are updated before postsynaptic potential. | 19 June 2014, 16:20:05 UTC |
| 24d85c8 | Helge Dinkelbach | 19 June 2014, 15:37:17 UTC | replaced SpikePopulation::prepareNeurons() by SpikePopulation::updateRefractoryCounter. Implemented explicit psp function on spike dendrite, which directly increase the neuronal current. | 19 June 2014, 15:37:17 UTC |
| e149a1c | Helge Dinkelbach | 19 June 2014, 13:48:18 UTC | Fixed crash on computing spiking networks in parallel | 19 June 2014, 13:48:18 UTC |
| 1115444 | Julien Vitay | 17 June 2014, 13:28:47 UTC | Added global methods to disable/enable learning in all projections | 17 June 2014, 13:28:47 UTC |
| ae57f24 | Julien Vitay | 17 June 2014, 12:34:14 UTC | Added early-stopping of simulations. | 17 June 2014, 12:34:14 UTC |
| 3285232 | Julien Vitay | 17 June 2014, 09:29:46 UTC | The network class now defined a run_until method. | 17 June 2014, 09:29:46 UTC |
| 8d1099e | Julien Vitay | 17 June 2014, 07:33:47 UTC | Forgot a print in Population._set_cython_attribute... | 17 June 2014, 07:33:47 UTC |
| 4f2b89b | Julien Vitay | 16 June 2014, 15:16:01 UTC | The check on the spike type was not correct. | 16 June 2014, 15:16:01 UTC |
| 03e6e9f | Julien Vitay | 16 June 2014, 14:40:32 UTC | Totally removed parallel processing of spiking networks. | 16 June 2014, 14:40:32 UTC |
| 51dc171 | Julien Vitay | 16 June 2014, 14:06:39 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 16 June 2014, 14:06:39 UTC |
| 4182489 | Julien Vitay | 16 June 2014, 13:41:06 UTC | doc: reduced the depth of main toc in index.rst | 16 June 2014, 13:41:06 UTC |
| 0e10c3e | Helge Dinkelbach | 16 June 2014, 13:28:59 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 16 June 2014, 13:28:59 UTC |
| 8931461 | Helge Dinkelbach | 16 June 2014, 13:28:31 UTC | Reordered spiking functions. | 16 June 2014, 13:28:31 UTC |
| 4222b3b | Julien Vitay | 16 June 2014, 10:53:20 UTC | Started version 4.2.1. | 16 June 2014, 10:53:20 UTC |
| 0359950 | Julien Vitay | 16 June 2014, 08:46:34 UTC | Fixed bug when cython is absent (readthedocs). | 16 June 2014, 08:46:34 UTC |
| ac3394f | Julien Vitay | 16 June 2014, 08:43:00 UTC | Started verson 4.2.0. | 16 June 2014, 08:43:00 UTC |
| 19bdb89 | Julien Vitay | 16 June 2014, 08:38:34 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 16 June 2014, 08:38:34 UTC |
| 0701837 | Julien Vitay | 16 June 2014, 08:37:56 UTC | Added Rate2SpikePopulation. | 16 June 2014, 08:37:56 UTC |
| 94fa159 | Helge Dinkelbach | 16 June 2014, 05:07:07 UTC | Added visualization of spiking profile. | 16 June 2014, 05:07:07 UTC |
| 77a39c8 | Julien Vitay | 15 June 2014, 19:03:20 UTC | Forgot to add the files... | 15 June 2014, 19:03:20 UTC |
| f26c94f | Julien Vitay | 15 June 2014, 19:01:54 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 15 June 2014, 19:01:54 UTC |
| 685459a | Julien Vitay | 15 June 2014, 19:01:25 UTC | Added a Spike2RatePopulation. | 15 June 2014, 19:01:25 UTC |
| 5351e6f | Helge | 15 June 2014, 17:01:46 UTC | Added profiling of some spiking model functions (pre- and post-event, conductance, spike delivery). | 15 June 2014, 17:01:46 UTC |
| 7f58fec | Julien Vitay | 14 June 2014, 14:11:25 UTC | doc: updated the reference to the Brian STDP example. | 14 June 2014, 14:11:25 UTC |
| 0afb468 | Julien Vitay | 14 June 2014, 14:05:19 UTC | doc: finished the description of the STDP example. | 14 June 2014, 14:05:19 UTC |
| 8983ead | Julien Vitay | 14 June 2014, 12:38:27 UTC | doc: updated the API, described the Izhikevich example. | 14 June 2014, 12:38:27 UTC |
| df898a5 | Julien Vitay | 13 June 2014, 11:27:08 UTC | Merge branch 'issue_4' into develop | 13 June 2014, 11:27:08 UTC |
| 8d3e955 | Julien Vitay | 13 June 2014, 11:21:21 UTC | Messed around with the random distributions. | 13 June 2014, 11:21:21 UTC |
| e36ea40 | Helge Dinkelbach | 12 June 2014, 11:42:45 UTC | Implementation of synaptic delay for spiking neurons. | 12 June 2014, 11:42:45 UTC |
| c6201bb | Helge Dinkelbach | 12 June 2014, 09:41:08 UTC | Splitted up dendrite templates for easier coding. | 12 June 2014, 09:41:08 UTC |
| d67c5ce | Helge Dinkelbach | 12 June 2014, 09:30:32 UTC | Major reimplementation of handling spike events. | 12 June 2014, 09:30:32 UTC |
| c461c8c | Julien Vitay | 12 June 2014, 09:20:21 UTC | Populations and Projections can now be saved and loaded individually. | 12 June 2014, 09:20:21 UTC |
| 1db699a | Julien Vitay | 12 June 2014, 06:41:08 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 12 June 2014, 06:41:08 UTC |
| 59e3ce4 | Helge Dinkelbach | 11 June 2014, 16:58:19 UTC | Fixed bug in seperation of pre_psp and pre_learn events. Dendrites get learning informations through their projections. | 11 June 2014, 16:58:19 UTC |
| 39a834b | Helge Dinkelbach | 11 June 2014, 16:39:07 UTC | Fixed bug: if variables were in pre_spike and post_spike events, the record entries was doubled. | 11 June 2014, 16:39:07 UTC |
| 2226558 | Julien Vitay | 11 June 2014, 16:25:49 UTC | Added an error when loading data from an old ANNarchy version. | 11 June 2014, 16:25:49 UTC |
| ae755c1 | Julien Vitay | 11 June 2014, 16:20:05 UTC | Transferred the building of a description to population and projection instead of IO. | 11 June 2014, 16:20:05 UTC |
| 5f4dba4 | Helge Dinkelbach | 11 June 2014, 10:59:21 UTC | Merge branch 'develop' into issue_4 | 11 June 2014, 10:59:21 UTC |
| 9dd40e2 | Helge Dinkelbach | 11 June 2014, 09:32:58 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 11 June 2014, 09:32:58 UTC |
| cb4fff0 | Helge Dinkelbach | 11 June 2014, 09:32:16 UTC | Each dendrite holds now a reference to its projection. | 11 June 2014, 09:32:16 UTC |
| 0ffca20 | Julien Vitay | 11 June 2014, 09:30:14 UTC | doc: added get_population | 11 June 2014, 09:30:14 UTC |
| 2265e2f | Julien Vitay | 11 June 2014, 08:25:00 UTC | Suppressed get_projection as PopulationViews can now be used to construct Projections... doc: updated the API and the inline docstrings. | 11 June 2014, 08:25:00 UTC |
| 354a905 | Julien Vitay | 10 June 2014, 16:08:08 UTC | doc: extended synaptic plasticity. | 10 June 2014, 16:08:08 UTC |
| b7b6a7b | Julien Vitay | 10 June 2014, 14:32:40 UTC | Changed the interface of save and load. * Pure data was not used, so suppressed for now * flags have been changed to populations and projections in order to make sense. * data can be compressed with gzip if the filename ends with .gz * any other extension works (only .mat does not work) documentation is updated. | 10 June 2014, 14:32:40 UTC |
| a0bcc66 | Julien Vitay | 10 June 2014, 12:19:14 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 10 June 2014, 12:19:14 UTC |
| dfe3a17 | Julien Vitay | 10 June 2014, 12:18:31 UTC | doc: finished documenting recording functions. | 10 June 2014, 12:18:31 UTC |
| 37b864c | Helge | 09 June 2014, 11:21:16 UTC | Splitted up the pre_spike equations in psp and learning related equations. | 09 June 2014, 11:21:16 UTC |
| 5142fc3 | Helge | 09 June 2014, 10:35:42 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 09 June 2014, 10:35:42 UTC |
| d221bde | Helge | 09 June 2014, 10:35:18 UTC | minor changes. | 09 June 2014, 10:35:18 UTC |
| 735032c | Helge | 09 June 2014, 10:34:16 UTC | Added matlab export to scalability class. Added seperate example for measurements with valgrind. | 09 June 2014, 10:34:16 UTC |
| 598acd6 | Helge | 09 June 2014, 10:31:40 UTC | Compilation with debug symbols in case of profile enabled. | 09 June 2014, 10:31:40 UTC |
| a3fd0eb | Helge | 09 June 2014, 10:09:55 UTC | Added parallel logging class and added sample evaluation on compute sum. | 09 June 2014, 10:09:55 UTC |
| 8fc9bcd | Julien Vitay | 08 June 2014, 21:12:50 UTC | doc: added section on recording. | 08 June 2014, 21:12:50 UTC |
| b26f8f3 | Julien Vitay | 06 June 2014, 14:27:51 UTC | Bug: coordinates_from_rank returned floats instead of ints!! | 06 June 2014, 14:27:51 UTC |
| 557af96 | Julien Vitay | 06 June 2014, 14:10:18 UTC | doc: Finished description of synaptic plasticity for spikes. | 06 June 2014, 14:10:18 UTC |
| 3754a78 | Helge | 06 June 2014, 12:55:34 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 06 June 2014, 12:55:34 UTC |
| ea5e950 | Helge | 06 June 2014, 12:54:28 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop Added DiscreteUniform as distribution. Conflicts: ANNarchy/core/Random.py ANNarchy/generator/dendrite/DendriteGenerator.py ANNarchy/generator/population/PopulationGenerator.py | 06 June 2014, 12:54:28 UTC |
| 7ae77c8 | Julien Vitay | 06 June 2014, 12:29:57 UTC | Cleaned the simple std example | 06 June 2014, 12:29:57 UTC |
| 3f600b8 | Julien Vitay | 06 June 2014, 12:03:48 UTC | seeds are added again in the equations. | 06 June 2014, 12:03:48 UTC |
| fc369f0 | Julien Vitay | 06 June 2014, 11:14:52 UTC | bug with t*dt. | 06 June 2014, 11:14:52 UTC |
| 4ed1096 | Julien Vitay | 06 June 2014, 09:31:26 UTC | Merge branch 'rate_code_delay' into develop | 06 June 2014, 09:31:26 UTC |
| 6adb06f | Julien Vitay | 06 June 2014, 09:30:46 UTC | Added delays to the NeuralField example. | 06 June 2014, 09:30:46 UTC |
| bfd0469 | Julien Vitay | 06 June 2014, 09:27:13 UTC | t, t_pre and t_post are now in milliseconds, not steps pre_spike and post_spike accept conditional statements. | 06 June 2014, 09:27:13 UTC |
| 4ecf0e1 | Helge | 06 June 2014, 08:05:57 UTC | Extended set of distributions by: gamma, lognormal and exponential. | 06 June 2014, 08:05:57 UTC |
| 56506d7 | Helge | 05 June 2014, 17:07:58 UTC | Delays need to be greater then dt, to take effect. | 05 June 2014, 17:07:58 UTC |
| 362af38 | Helge Dinkelbach | 05 June 2014, 14:05:48 UTC | Added test for delayed synapses. | 05 June 2014, 14:05:48 UTC |
| 57f69fe | Helge | 04 June 2014, 14:26:09 UTC | Removed not needed debug outputs. | 04 June 2014, 14:26:09 UTC |
| 96c22c1 | Helge | 04 June 2014, 14:21:28 UTC | Fixed bug on accessing non constant delayed firing rates. | 04 June 2014, 14:21:28 UTC |
| a04bb69 | Julien Vitay | 04 June 2014, 14:04:01 UTC | doc : Added a README file to the doc. | 04 June 2014, 14:04:01 UTC |
| 3048270 | Helge | 04 June 2014, 13:59:00 UTC | Updated createFromCSR according to structural change. | 04 June 2014, 13:59:00 UTC |
| 3492a68 | Helge | 04 June 2014, 13:52:04 UTC | Projections update the maximum delays of presynaptic populations. | 04 June 2014, 13:52:04 UTC |
| 6d2229d | Helge | 04 June 2014, 13:49:28 UTC | Analyzer forward access to CSR object of the projection. | 04 June 2014, 13:49:28 UTC |
| 463549a | Helge | 04 June 2014, 13:47:22 UTC | Extended CSR: delays are stored seperatly, added max_delay. Changed connectors: if delays are int they will be interpreted as time in ms. | 04 June 2014, 13:47:35 UTC |
| 23dea47 | Julien Vitay | 04 June 2014, 13:42:20 UTC | doc: documented RateSynapse in the manual. | 04 June 2014, 13:42:20 UTC |
| 8c2b816 | Julien Vitay | 04 June 2014, 11:22:24 UTC | doc: ratesynapse | 04 June 2014, 11:22:24 UTC |
| 5d74bfb | Julien Vitay | 04 June 2014, 10:59:09 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 04 June 2014, 10:59:09 UTC |
| d137419 | Julien Vitay | 04 June 2014, 10:58:33 UTC | doc: started ratesynapse. | 04 June 2014, 10:58:33 UTC |
| 325afbf | Helge | 04 June 2014, 09:52:48 UTC | RateDendriteGenerator distinguishes now the psp implementation according to the delay. | 04 June 2014, 09:52:48 UTC |
| e0afb86 | Julien Vitay | 04 June 2014, 08:57:07 UTC | doc: finished description of spiking neurons. | 04 June 2014, 08:57:07 UTC |
| a9535fd | Julien Vitay | 04 June 2014, 08:56:07 UTC | Avoid storing population.ranks. The connectors check if it is a population or populationview. | 04 June 2014, 08:56:07 UTC |
| dc03532 | Helge Dinkelbach | 03 June 2014, 09:49:36 UTC | Fixed typos. | 03 June 2014, 09:49:36 UTC |
