| 1db699a | Julien Vitay | 12 June 2014, 06:41:08 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 12 June 2014, 06:41:08 UTC |
| 59e3ce4 | Helge Dinkelbach | 11 June 2014, 16:58:19 UTC | Fixed bug in seperation of pre_psp and pre_learn events. Dendrites get learning informations through their projections. | 11 June 2014, 16:58:19 UTC |
| 39a834b | Helge Dinkelbach | 11 June 2014, 16:39:07 UTC | Fixed bug: if variables were in pre_spike and post_spike events, the record entries was doubled. | 11 June 2014, 16:39:07 UTC |
| 2226558 | Julien Vitay | 11 June 2014, 16:25:49 UTC | Added an error when loading data from an old ANNarchy version. | 11 June 2014, 16:25:49 UTC |
| ae755c1 | Julien Vitay | 11 June 2014, 16:20:05 UTC | Transferred the building of a description to population and projection instead of IO. | 11 June 2014, 16:20:05 UTC |
| 5f4dba4 | Helge Dinkelbach | 11 June 2014, 10:59:21 UTC | Merge branch 'develop' into issue_4 | 11 June 2014, 10:59:21 UTC |
| 9dd40e2 | Helge Dinkelbach | 11 June 2014, 09:32:58 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 11 June 2014, 09:32:58 UTC |
| cb4fff0 | Helge Dinkelbach | 11 June 2014, 09:32:16 UTC | Each dendrite holds now a reference to its projection. | 11 June 2014, 09:32:16 UTC |
| 0ffca20 | Julien Vitay | 11 June 2014, 09:30:14 UTC | doc: added get_population | 11 June 2014, 09:30:14 UTC |
| 2265e2f | Julien Vitay | 11 June 2014, 08:25:00 UTC | Suppressed get_projection as PopulationViews can now be used to construct Projections... doc: updated the API and the inline docstrings. | 11 June 2014, 08:25:00 UTC |
| 354a905 | Julien Vitay | 10 June 2014, 16:08:08 UTC | doc: extended synaptic plasticity. | 10 June 2014, 16:08:08 UTC |
| b7b6a7b | Julien Vitay | 10 June 2014, 14:32:40 UTC | Changed the interface of save and load. * Pure data was not used, so suppressed for now * flags have been changed to populations and projections in order to make sense. * data can be compressed with gzip if the filename ends with .gz * any other extension works (only .mat does not work) documentation is updated. | 10 June 2014, 14:32:40 UTC |
| a0bcc66 | Julien Vitay | 10 June 2014, 12:19:14 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 10 June 2014, 12:19:14 UTC |
| dfe3a17 | Julien Vitay | 10 June 2014, 12:18:31 UTC | doc: finished documenting recording functions. | 10 June 2014, 12:18:31 UTC |
| 37b864c | Helge | 09 June 2014, 11:21:16 UTC | Splitted up the pre_spike equations in psp and learning related equations. | 09 June 2014, 11:21:16 UTC |
| 5142fc3 | Helge | 09 June 2014, 10:35:42 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 09 June 2014, 10:35:42 UTC |
| d221bde | Helge | 09 June 2014, 10:35:18 UTC | minor changes. | 09 June 2014, 10:35:18 UTC |
| 735032c | Helge | 09 June 2014, 10:34:16 UTC | Added matlab export to scalability class. Added seperate example for measurements with valgrind. | 09 June 2014, 10:34:16 UTC |
| 598acd6 | Helge | 09 June 2014, 10:31:40 UTC | Compilation with debug symbols in case of profile enabled. | 09 June 2014, 10:31:40 UTC |
| a3fd0eb | Helge | 09 June 2014, 10:09:55 UTC | Added parallel logging class and added sample evaluation on compute sum. | 09 June 2014, 10:09:55 UTC |
| 8fc9bcd | Julien Vitay | 08 June 2014, 21:12:50 UTC | doc: added section on recording. | 08 June 2014, 21:12:50 UTC |
| b26f8f3 | Julien Vitay | 06 June 2014, 14:27:51 UTC | Bug: coordinates_from_rank returned floats instead of ints!! | 06 June 2014, 14:27:51 UTC |
| 557af96 | Julien Vitay | 06 June 2014, 14:10:18 UTC | doc: Finished description of synaptic plasticity for spikes. | 06 June 2014, 14:10:18 UTC |
| 3754a78 | Helge | 06 June 2014, 12:55:34 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 06 June 2014, 12:55:34 UTC |
| ea5e950 | Helge | 06 June 2014, 12:54:28 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop Added DiscreteUniform as distribution. Conflicts: ANNarchy/core/Random.py ANNarchy/generator/dendrite/DendriteGenerator.py ANNarchy/generator/population/PopulationGenerator.py | 06 June 2014, 12:54:28 UTC |
| 7ae77c8 | Julien Vitay | 06 June 2014, 12:29:57 UTC | Cleaned the simple std example | 06 June 2014, 12:29:57 UTC |
| 3f600b8 | Julien Vitay | 06 June 2014, 12:03:48 UTC | seeds are added again in the equations. | 06 June 2014, 12:03:48 UTC |
| fc369f0 | Julien Vitay | 06 June 2014, 11:14:52 UTC | bug with t*dt. | 06 June 2014, 11:14:52 UTC |
| 4ed1096 | Julien Vitay | 06 June 2014, 09:31:26 UTC | Merge branch 'rate_code_delay' into develop | 06 June 2014, 09:31:26 UTC |
| 6adb06f | Julien Vitay | 06 June 2014, 09:30:46 UTC | Added delays to the NeuralField example. | 06 June 2014, 09:30:46 UTC |
| bfd0469 | Julien Vitay | 06 June 2014, 09:27:13 UTC | t, t_pre and t_post are now in milliseconds, not steps pre_spike and post_spike accept conditional statements. | 06 June 2014, 09:27:13 UTC |
| 4ecf0e1 | Helge | 06 June 2014, 08:05:57 UTC | Extended set of distributions by: gamma, lognormal and exponential. | 06 June 2014, 08:05:57 UTC |
| 56506d7 | Helge | 05 June 2014, 17:07:58 UTC | Delays need to be greater then dt, to take effect. | 05 June 2014, 17:07:58 UTC |
| 362af38 | Helge Dinkelbach | 05 June 2014, 14:05:48 UTC | Added test for delayed synapses. | 05 June 2014, 14:05:48 UTC |
| 57f69fe | Helge | 04 June 2014, 14:26:09 UTC | Removed not needed debug outputs. | 04 June 2014, 14:26:09 UTC |
| 96c22c1 | Helge | 04 June 2014, 14:21:28 UTC | Fixed bug on accessing non constant delayed firing rates. | 04 June 2014, 14:21:28 UTC |
| a04bb69 | Julien Vitay | 04 June 2014, 14:04:01 UTC | doc : Added a README file to the doc. | 04 June 2014, 14:04:01 UTC |
| 3048270 | Helge | 04 June 2014, 13:59:00 UTC | Updated createFromCSR according to structural change. | 04 June 2014, 13:59:00 UTC |
| 3492a68 | Helge | 04 June 2014, 13:52:04 UTC | Projections update the maximum delays of presynaptic populations. | 04 June 2014, 13:52:04 UTC |
| 6d2229d | Helge | 04 June 2014, 13:49:28 UTC | Analyzer forward access to CSR object of the projection. | 04 June 2014, 13:49:28 UTC |
| 463549a | Helge | 04 June 2014, 13:47:22 UTC | Extended CSR: delays are stored seperatly, added max_delay. Changed connectors: if delays are int they will be interpreted as time in ms. | 04 June 2014, 13:47:35 UTC |
| 23dea47 | Julien Vitay | 04 June 2014, 13:42:20 UTC | doc: documented RateSynapse in the manual. | 04 June 2014, 13:42:20 UTC |
| 8c2b816 | Julien Vitay | 04 June 2014, 11:22:24 UTC | doc: ratesynapse | 04 June 2014, 11:22:24 UTC |
| 5d74bfb | Julien Vitay | 04 June 2014, 10:59:09 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 04 June 2014, 10:59:09 UTC |
| d137419 | Julien Vitay | 04 June 2014, 10:58:33 UTC | doc: started ratesynapse. | 04 June 2014, 10:58:33 UTC |
| 325afbf | Helge | 04 June 2014, 09:52:48 UTC | RateDendriteGenerator distinguishes now the psp implementation according to the delay. | 04 June 2014, 09:52:48 UTC |
| e0afb86 | Julien Vitay | 04 June 2014, 08:57:07 UTC | doc: finished description of spiking neurons. | 04 June 2014, 08:57:07 UTC |
| a9535fd | Julien Vitay | 04 June 2014, 08:56:07 UTC | Avoid storing population.ranks. The connectors check if it is a population or populationview. | 04 June 2014, 08:56:07 UTC |
| dc03532 | Helge Dinkelbach | 03 June 2014, 09:49:36 UTC | Fixed typos. | 03 June 2014, 09:49:36 UTC |
| 89da3e8 | Julien Vitay | 02 June 2014, 12:43:30 UTC | g_exc=0.0 is now standard synaptic behavior. | 02 June 2014, 12:43:30 UTC |
| 80fe1c1 | Julien Vitay | 02 June 2014, 11:41:29 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 02 June 2014, 11:41:29 UTC |
| 1a21767 | Julien Vitay | 02 June 2014, 11:41:09 UTC | Merge branch 'popviews_connector' into develop | 02 June 2014, 11:41:09 UTC |
| 7801aa3 | Julien Vitay | 02 June 2014, 11:30:09 UTC | Started making g_exc = 0.0 default in spiking neurons. | 02 June 2014, 11:30:09 UTC |
| 8b8d349 | Helge | 02 June 2014, 09:09:26 UTC | Refractory period can be inited with random initialization. | 02 June 2014, 09:09:26 UTC |
| 7807dd5 | Julien Vitay | 01 June 2014, 18:58:55 UTC | Allowed PopulationViews to be used to build Projections (except gaussian and dog). | 01 June 2014, 18:58:55 UTC |
| c98daa8 | Julien Vitay | 01 June 2014, 17:54:09 UTC | Started allowing PopulationViews to be used in Projections. Works for one sub-projection, but not two.... | 01 June 2014, 17:54:09 UTC |
| d1ae89a | Helge | 01 June 2014, 10:10:10 UTC | Added measured times (raw data) to scalability plot. Reordered code of Performance test. | 01 June 2014, 10:10:10 UTC |
| e80a85d | Helge | 31 May 2014, 17:27:01 UTC | Changed internal structure of profiling extension. Extended profiler by scalability analyzis. | 31 May 2014, 17:27:01 UTC |
| 4b985ad | Julien Vitay | 31 May 2014, 13:49:40 UTC | import numpy was not needed in Connector.pxd | 31 May 2014, 13:49:40 UTC |
| af363c5 | Julien Vitay | 31 May 2014, 13:40:03 UTC | doc: added tutorial to build connector methods in Cython | 31 May 2014, 13:40:03 UTC |
| f6a9edc | Julien Vitay | 31 May 2014, 12:16:01 UTC | Exported CSR to create conection patterns | 31 May 2014, 12:16:01 UTC |
| 1c12313 | Julien Vitay | 31 May 2014, 11:46:41 UTC | doc: refactored the documentation | 31 May 2014, 11:46:41 UTC |
| 05b90d1 | Julien Vitay | 29 May 2014, 19:23:11 UTC | Allowed RandomDistribution objects to take global parameters as arguments. Warning: - changes in the parameters won't have effect after compile() - Needs to find a structure for that, wuthout performance penalty. | 29 May 2014, 19:23:11 UTC |
| a3d76ca | Julien Vitay | 29 May 2014, 13:37:39 UTC | min and max bounds of a variable can now be an expression of other variables. | 29 May 2014, 13:37:39 UTC |
| 2689fab | Julien Vitay | 29 May 2014, 12:30:21 UTC | Allowed the operators ==, !=, is and is not in conditions (also spike conditions) | 29 May 2014, 12:30:21 UTC |
| 28febbe | Julien Vitay | 29 May 2014, 11:05:43 UTC | Started version 4.1.3 | 29 May 2014, 11:05:43 UTC |
| 520e29b | Julien Vitay | 28 May 2014, 21:48:10 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 28 May 2014, 21:48:10 UTC |
| b5e7f0d | Julien Vitay | 28 May 2014, 21:47:24 UTC | simplify for conditions produces weird C code. Taken out. | 28 May 2014, 21:47:24 UTC |
| a612b15 | Julien Vitay | 28 May 2014, 21:46:25 UTC | Parser produced an error message when mean(pre.r) was used in a global variable. | 28 May 2014, 21:46:25 UTC |
| 44bba36 | Julien Vitay | 28 May 2014, 21:45:04 UTC | stop_recording() was giving a wrong error message. | 28 May 2014, 21:45:04 UTC |
| 9b14609 | Julien Vitay | 27 May 2014, 13:54:29 UTC | Analysis of psp was till the old way... | 27 May 2014, 13:54:29 UTC |
| b0af439 | Helge | 26 May 2014, 22:11:38 UTC | Extended profiler. | 26 May 2014, 22:11:38 UTC |
| 97623a1 | Helge | 26 May 2014, 21:10:37 UTC | Added Network.destroy() function. | 26 May 2014, 21:10:37 UTC |
| 7aaa2a3 | Helge | 26 May 2014, 21:09:38 UTC | Added _DEBUG_SIMULATION_CONTROL condition to several debug messages. | 26 May 2014, 21:09:38 UTC |
| 34269b9 | Helge | 26 May 2014, 21:07:38 UTC | Added Network::destroy() | 26 May 2014, 21:07:38 UTC |
| 094a3e5 | Julien Vitay | 26 May 2014, 20:11:52 UTC | Fixed the _warning method to emit warnings only when warnings are not suppressed in setup() | 26 May 2014, 20:11:52 UTC |
| 0658ba7 | Julien Vitay | 26 May 2014, 19:33:37 UTC | Added warnings when a target is used in a neuron but not connected. | 26 May 2014, 19:33:37 UTC |
| c3b10a0 | Julien Vitay | 26 May 2014, 19:27:36 UTC | Synapses now have access to pre.sum(dopa) or post.sum(exc) directly. | 26 May 2014, 19:27:36 UTC |
| ff2249e | Julien Vitay | 26 May 2014, 16:16:04 UTC | Fixed bug wen accessing pre/post synaptic variables in a synapse. | 26 May 2014, 16:16:04 UTC |
| 2bb09cb | Julien Vitay | 26 May 2014, 15:51:23 UTC | Stored the inverse rank in pre_spike to avoid multiple accesses to the the array. | 26 May 2014, 15:51:23 UTC |
| f845ea4 | Julien Vitay | 26 May 2014, 15:21:08 UTC | Moved PoissonPopulation to the core | 26 May 2014, 15:21:08 UTC |
| b037e00 | Julien Vitay | 26 May 2014, 14:33:59 UTC | Allowed variables to differ only by capitalization (eg c and C). The generated C++ methods know follow the python convention, not C++. | 26 May 2014, 14:33:59 UTC |
| 167fb6d | Julien Vitay | 26 May 2014, 13:07:09 UTC | Started the 4.1.2 version. | 26 May 2014, 13:07:09 UTC |
| a08fe0f | Julien Vitay | 26 May 2014, 13:04:01 UTC | Added a version tracker which recompiles when the ANNarchy release number has changed. | 26 May 2014, 13:04:01 UTC |
| 230e10f | Julien Vitay | 26 May 2014, 11:47:25 UTC | Replaced "rate" by "r". | 26 May 2014, 11:47:25 UTC |
| 643f353 | Julien Vitay | 26 May 2014, 11:27:41 UTC | Started replacing rate by r. Still a bug. | 26 May 2014, 11:27:41 UTC |
| bf95395 | Julien Vitay | 23 May 2014, 15:26:58 UTC | Replaced systematically "value" by "w" | 23 May 2014, 15:26:58 UTC |
| 0e09ec4 | Julien Vitay | 23 May 2014, 14:37:28 UTC | Doc: fixed typos. | 23 May 2014, 14:37:28 UTC |
| 4575d70 | Helge Dinkelbach | 23 May 2014, 13:33:54 UTC | Split up propagate spike in pre and post phase. | 23 May 2014, 13:33:54 UTC |
| 7872920 | Helge Dinkelbach | 23 May 2014, 13:32:45 UTC | spike emitation only if not in refractory period. | 23 May 2014, 13:32:45 UTC |
| e737951 | Helge Dinkelbach | 23 May 2014, 13:31:55 UTC | Pre events are only executed if there was no post spike. | 23 May 2014, 13:31:55 UTC |
| 2c81283 | Helge Dinkelbach | 23 May 2014, 13:31:12 UTC | Corrected indexing error. | 23 May 2014, 13:31:12 UTC |
| cf633a6 | Helge Dinkelbach | 23 May 2014, 13:30:50 UTC | Added new functions for spike event handling | 23 May 2014, 13:30:50 UTC |
| 9b10515 | Helge Dinkelbach | 23 May 2014, 13:29:46 UTC | Propagate spikes now divided into post and pre phase. | 23 May 2014, 13:29:46 UTC |
| ee476f2 | Helge Dinkelbach | 23 May 2014, 11:54:47 UTC | Merge branch 'refractory' into develop | 23 May 2014, 11:54:47 UTC |
| c78d43b | Julien Vitay | 23 May 2014, 11:53:28 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 23 May 2014, 11:53:28 UTC |
| 7adb812 | Helge Dinkelbach | 23 May 2014, 11:53:24 UTC | Merge branch 'refractory' of https://bitbucket.org/annarchy/annarchy-4.0 into refractory | 23 May 2014, 11:53:24 UTC |
| 24c6238 | Helge Dinkelbach | 23 May 2014, 11:52:40 UTC | Set default number of threads to 1 | 23 May 2014, 11:52:40 UTC |
| f453dd0 | Julien Vitay | 23 May 2014, 11:52:31 UTC | Updated the description of OpenMP in the doc. | 23 May 2014, 11:52:31 UTC |
| 774ce36 | Julien Vitay | 23 May 2014, 11:39:48 UTC | Added import numpy in Utils | 23 May 2014, 11:39:48 UTC |
