| 454d5c8 | Qingqing Wang | 14 July 2018, 06:34:45 UTC | Update README.md | 14 July 2018, 06:34:45 UTC |
| 86b7ace | Qingqing Wang | 14 July 2018, 06:11:41 UTC | Update README.md | 14 July 2018, 06:11:41 UTC |
| 4206798 | Qingqing Wang | 14 July 2018, 06:04:41 UTC | Add files via upload | 14 July 2018, 06:04:41 UTC |
| e5ad12e | Qingqing Wang | 14 July 2018, 06:03:06 UTC | Delete JUM_4.sh | 14 July 2018, 06:03:06 UTC |
| c75cae1 | Qingqing Wang | 14 July 2018, 06:02:58 UTC | Delete JUM_3.sh | 14 July 2018, 06:02:58 UTC |
| 19afc6d | Qingqing Wang | 14 July 2018, 06:02:49 UTC | Delete JUM_2-3.sh | 14 July 2018, 06:02:49 UTC |
| bc70692 | Qingqing Wang | 14 July 2018, 06:02:29 UTC | Delete JUM_2-2.sh | 14 July 2018, 06:02:29 UTC |
| 93cd45e | Qingqing Wang | 14 July 2018, 06:02:19 UTC | Delete JUM_2-1.sh | 14 July 2018, 06:02:19 UTC |
| 19e9080 | Qingqing Wang | 14 July 2018, 05:50:04 UTC | Update README.md | 14 July 2018, 05:50:04 UTC |
| fbd30ec | Qingqing Wang | 14 July 2018, 05:49:27 UTC | Update README.md | 14 July 2018, 05:49:27 UTC |
| 59ed579 | Qingqing Wang | 14 July 2018, 05:48:44 UTC | Update README.md | 14 July 2018, 05:48:44 UTC |
| f551d63 | Qingqing Wang | 12 June 2018, 17:41:17 UTC | Update README.md | 12 June 2018, 17:41:17 UTC |
| b340065 | Qingqing Wang | 31 May 2018, 17:04:15 UTC | Update README.md | 31 May 2018, 17:04:15 UTC |
| c5ef9ec | Qingqing Wang | 21 May 2018, 23:03:33 UTC | Merge pull request #13 from qqwang-berkeley/add-license-1 CREATE LICENSE | 21 May 2018, 23:03:33 UTC |
| 00fdb3e | Qingqing Wang | 21 May 2018, 23:03:13 UTC | CREATE LICENSE | 21 May 2018, 23:03:13 UTC |
| 75079f2 | Qingqing Wang | 13 April 2018, 16:20:26 UTC | Update README.md | 13 April 2018, 16:20:26 UTC |
| 3951fd2 | Qingqing Wang | 13 April 2018, 16:00:34 UTC | Update README.md | 13 April 2018, 16:00:34 UTC |
| b1c825e | Qingqing Wang | 12 April 2018, 21:59:29 UTC | Merge pull request #12 from qqwang-berkeley/rearrangefiles Rename determining_rightful_long_intron_retention_event.pl to bin/det… | 12 April 2018, 21:59:29 UTC |
| 877088c | Qingqing Wang | 12 April 2018, 21:57:13 UTC | Rename JUM manual for 1.3.7-1.3.11 to Old JUM manual for 1.3.7-1.3.11 | 12 April 2018, 21:57:13 UTC |
| fbe93f8 | Qingqing Wang | 12 April 2018, 21:56:43 UTC | Rename second_processing_generate_JUM_reference_for_profiled_total_alternative_splicing_event_junction.pl to bin/second_processing_generate_JUM_reference_for_profiled_total_alternative_splicing_event_junction.pl | 12 April 2018, 21:56:43 UTC |
| 16bbcaa | Qingqing Wang | 12 April 2018, 21:56:28 UTC | Rename screening_intron_retention_event_for_no_inner_junction.pl to bin/screening_intron_retention_event_for_no_inner_junction.pl | 12 April 2018, 21:56:28 UTC |
| 97a37e6 | Qingqing Wang | 12 April 2018, 21:55:41 UTC | Rename screening_intron_retention_event_for_deltachange_consistency.pl to bin/screening_intron_retention_event_for_deltachange_consistency.pl | 12 April 2018, 21:55:41 UTC |
| 29c26bf | Qingqing Wang | 12 April 2018, 21:55:27 UTC | Rename screening_cassette_exon_events.pl to bin/screening_cassette_exon_events.pl | 12 April 2018, 21:55:27 UTC |
| a1b2b57 | Qingqing Wang | 12 April 2018, 21:55:13 UTC | Rename screening_MXE_events.pl to bin/screening_MXE_events.pl | 12 April 2018, 21:55:13 UTC |
| 7d9e332 | Qingqing Wang | 12 April 2018, 21:54:58 UTC | Rename screening_A5SS_A3SS_events.pl to bin/screening_A5SS_A3SS_events.pl | 12 April 2018, 21:54:58 UTC |
| 04a11b5 | Qingqing Wang | 12 April 2018, 21:54:45 UTC | Rename profiling_splicing_patterns_from_AS_events_6.pl to bin/profiling_splicing_patterns_from_AS_events_6.pl | 12 April 2018, 21:54:45 UTC |
| 3812a68 | Qingqing Wang | 12 April 2018, 21:54:33 UTC | Rename profiling_splicing_patterns_from_AS_events_5.pl to bin/profiling_splicing_patterns_from_AS_events_5.pl | 12 April 2018, 21:54:33 UTC |
| 8c4ce11 | Qingqing Wang | 12 April 2018, 21:54:19 UTC | Rename profiling_splicing_patterns_from_AS_events_4.pl to bin/profiling_splicing_patterns_from_AS_events_4.pl | 12 April 2018, 21:54:19 UTC |
| 6850cdb | Qingqing Wang | 12 April 2018, 21:54:02 UTC | Rename profiling_splicing_patterns_from_AS_events_3_updated.pl to bin/profiling_splicing_patterns_from_AS_events_3_updated.pl | 12 April 2018, 21:54:02 UTC |
| 2252847 | Qingqing Wang | 12 April 2018, 21:53:46 UTC | Rename profiling_splicing_patterns_from_AS_events_2.pl to bin/profiling_splicing_patterns_from_AS_events_2.pl | 12 April 2018, 21:53:46 UTC |
| 6278f64 | Qingqing Wang | 12 April 2018, 21:53:28 UTC | Rename profiling_splicing_patterns_from_AS_events_1.pl to bin/profiling_splicing_patterns_from_AS_events_1.pl | 12 April 2018, 21:53:28 UTC |
| 43dd9b3 | Qingqing Wang | 12 April 2018, 21:53:13 UTC | Rename profiling_splicing_patterns_from_AS_events.pl to bin/profiling_splicing_patterns_from_AS_events.pl | 12 April 2018, 21:53:13 UTC |
| 386b156 | Qingqing Wang | 12 April 2018, 21:52:57 UTC | Rename profile_overhang_from_STAR_output_step_2.pl to bin/profile_overhang_from_STAR_output_step_2.pl | 12 April 2018, 21:52:57 UTC |
| 1a0e516 | Qingqing Wang | 12 April 2018, 21:52:42 UTC | Rename profile_overhang_from_STAR_output_step_1.pl to bin/profile_overhang_from_STAR_output_step_1.pl | 12 April 2018, 21:52:42 UTC |
| fc6356d | Qingqing Wang | 12 April 2018, 21:52:28 UTC | Rename profile_AS_events_sharing_5_prime_ss.pl to bin/profile_AS_events_sharing_5_prime_ss.pl | 12 April 2018, 21:52:28 UTC |
| c4550a8 | Qingqing Wang | 12 April 2018, 21:52:12 UTC | Rename profile_AS_events_sharing_3_prime_ss.pl to bin/profile_AS_events_sharing_3_prime_ss.pl | 12 April 2018, 21:52:12 UTC |
| 2841d29 | Qingqing Wang | 12 April 2018, 21:51:58 UTC | Rename process_raw_AS_differential_output.pl to bin/process_raw_AS_differential_output.pl | 12 April 2018, 21:51:58 UTC |
| b3cfc69 | Qingqing Wang | 12 April 2018, 21:51:43 UTC | Rename preparing_intron_retention_event_for_JUM_combine.pl to bin/preparing_intron_retention_event_for_JUM_combine.pl | 12 April 2018, 21:51:43 UTC |
| 963d515 | Qingqing Wang | 12 April 2018, 21:51:25 UTC | Rename preparing_intron_retention_count_table_short_intron.pl to bin/preparing_intron_retention_count_table_short_intron.pl | 12 April 2018, 21:51:25 UTC |
| 96a8b81 | Qingqing Wang | 12 April 2018, 21:51:08 UTC | Rename preparing_intron_retention_count_table_long_intron.pl to bin/preparing_intron_retention_count_table_long_intron.pl | 12 April 2018, 21:51:08 UTC |
| ea242dd | Qingqing Wang | 12 April 2018, 21:50:54 UTC | Rename prepare_significant_long_intron_retention_event.pl to bin/prepare_significant_long_intron_retention_event.pl | 12 April 2018, 21:50:54 UTC |
| ca186cb | Qingqing Wang | 12 April 2018, 21:50:40 UTC | Rename prepare_count_file_after_STAR_2_pass_mapping.pl to bin/prepare_count_file_after_STAR_2_pass_mapping.pl | 12 April 2018, 21:50:40 UTC |
| 0e9e875 | Qingqing Wang | 12 April 2018, 21:50:20 UTC | Rename output_reformat_JUM_4.pl to bin/output_reformat_JUM_4.pl | 12 April 2018, 21:50:20 UTC |
| 3f46388 | Qingqing Wang | 12 April 2018, 21:50:06 UTC | Rename output_reformat_JUM_3.pl to bin/output_reformat_JUM_3.pl | 12 April 2018, 21:50:06 UTC |
| 6ac10dd | Qingqing Wang | 12 April 2018, 21:49:49 UTC | Rename output_reformat_JUM_2.pl to bin/output_reformat_JUM_2.pl | 12 April 2018, 21:49:49 UTC |
| c9017d4 | Qingqing Wang | 12 April 2018, 21:49:32 UTC | Rename output_reformat_JUM_1.pl to bin/output_reformat_JUM_1.pl | 12 April 2018, 21:49:32 UTC |
| 492dc2f | Qingqing Wang | 12 April 2018, 21:49:16 UTC | Rename making_junction_count_file_matching_annotation_for_JUM_in_intron_retention.pl to bin/making_junction_count_file_matching_annotation_for_JUM_in_intron_retention.pl | 12 April 2018, 21:49:16 UTC |
| 33c4ba4 | Qingqing Wang | 12 April 2018, 21:49:02 UTC | Rename making_junction_count_file_matching_annotation_for_JUM.pl to bin/making_junction_count_file_matching_annotation_for_JUM.pl | 12 April 2018, 21:49:02 UTC |
| 7febc1b | Qingqing Wang | 12 April 2018, 21:48:44 UTC | Rename identify_gene_name_for_JUM_output_3.pl to bin/identify_gene_name_for_JUM_output_3.pl | 12 April 2018, 21:48:44 UTC |
| 0055e1d | Qingqing Wang | 12 April 2018, 21:48:27 UTC | Rename identify_gene_name_for_JUM_output_2.pl to bin/identify_gene_name_for_JUM_output_2.pl | 12 April 2018, 21:48:27 UTC |
| 1f05c65 | Qingqing Wang | 12 April 2018, 21:48:09 UTC | Rename identify_gene_name_for_JUM_output_1.pl to bin/identify_gene_name_for_JUM_output_1.pl | 12 April 2018, 21:48:09 UTC |
| c2bb9df | Qingqing Wang | 12 April 2018, 21:47:55 UTC | Rename generate_JUM_format_annotation_file_for_profiled_alternative_splicing_event_junction.pl to bin/generate_JUM_format_annotation_file_for_profiled_alternative_splicing_event_junction.pl | 12 April 2018, 21:47:55 UTC |
| 4575c13 | Qingqing Wang | 12 April 2018, 21:47:33 UTC | Rename first_processing_generate_JUM_reference_for_profiled_total_alternative_splicing_event_junction.pl to bin/first_processing_generate_JUM_reference_for_profiled_total_alternative_splicing_event_junction.pl | 12 April 2018, 21:47:33 UTC |
| d5306cd | Qingqing Wang | 12 April 2018, 21:47:16 UTC | Rename extract_intron_retention_event_coordinate_from_samples_conditional_union.pl to bin/extract_intron_retention_event_coordinate_from_samples_conditional_union.pl | 12 April 2018, 21:47:16 UTC |
| f8041a3 | Qingqing Wang | 12 April 2018, 21:47:03 UTC | Rename extract_intron_retention_event_coordinate_conditional_union_splicing_junction_gff.pl to bin/extract_intron_retention_event_coordinate_conditional_union_splicing_junction_gff.pl | 12 April 2018, 21:47:03 UTC |
| be63120 | Qingqing Wang | 12 April 2018, 21:46:49 UTC | Rename experiment_design.txt to bin/experiment_design.txt | 12 April 2018, 21:46:49 UTC |
| 11f39f1 | Qingqing Wang | 12 April 2018, 21:46:24 UTC | Rename determining_rightful_total_cassette_exon_event.pl to bin/determining_rightful_total_cassette_exon_event.pl | 12 April 2018, 21:46:24 UTC |
| d2286eb | Qingqing Wang | 12 April 2018, 21:45:23 UTC | Rename determining_rightful_long_intron_retention_event.pl to bin/determining_rightful_long_intron_retention_event.pl | 12 April 2018, 21:45:23 UTC |
| 68c63d1 | Qingqing Wang | 12 April 2018, 21:44:54 UTC | Rename count_reads_for_intron_retention_sam.pl to bin/count_reads_for_intron_retention_sam.pl | 12 April 2018, 21:44:54 UTC |
| a6a2a06 | Qingqing Wang | 12 April 2018, 21:44:35 UTC | Rename count_intron_read_long_intron_retention_step3.pl to bin/count_intron_read_long_intron_retention_step3.pl | 12 April 2018, 21:44:35 UTC |
| 44fec04 | Qingqing Wang | 12 April 2018, 21:43:09 UTC | Rename count_intron_read_long_intron_retention_step2.pl to bin/count_intron_read_long_intron_retention_step2.pl | 12 April 2018, 21:43:09 UTC |
| bfbb1ad | Qingqing Wang | 12 April 2018, 21:42:53 UTC | Rename count_intron_read_long_intron_retention_step1.pl to bin/count_intron_read_long_intron_retention_step1.pl | 12 April 2018, 21:42:53 UTC |
| 0259d01 | Qingqing Wang | 12 April 2018, 21:42:30 UTC | Rename R_script_JUM.R to bin/R_script_JUM.R | 12 April 2018, 21:42:30 UTC |
| 932f933 | Qingqing Wang | 12 April 2018, 21:41:05 UTC | Rename Identify_junctions_exist_in_certain_number_of_input_files.pl to bin/Identify_junctions_exist_in_certain_number_of_input_files.pl | 12 April 2018, 21:41:05 UTC |
| 571a015 | Qingqing Wang | 12 April 2018, 21:40:42 UTC | Rename Identify_junctions_exist_in_all_samples.pl to bin/Identify_junctions_exist_in_all_samples.pl | 12 April 2018, 21:40:42 UTC |
| 76af6d6 | Qingqing Wang | 12 April 2018, 21:40:23 UTC | Rename Identify_intron_retention_event_exist_in_all_samples.pl to bin/Identify_intron_retention_event_exist_in_all_samples.pl | 12 April 2018, 21:40:23 UTC |
| 2f0ef37 | Qingqing Wang | 12 April 2018, 21:37:26 UTC | Merge pull request #11 from qqwang-berkeley/versionupgradenew Delete JUM_3.sh | 12 April 2018, 21:37:26 UTC |
| a2a98ed | Qingqing Wang | 12 April 2018, 21:35:29 UTC | Add files via upload | 12 April 2018, 21:35:29 UTC |
| 1b68ee8 | Qingqing Wang | 12 April 2018, 21:33:59 UTC | Delete second_processing_generate_JUM_reference_for_profiled_total_alternative_splicing_event_junction.pl | 12 April 2018, 21:33:59 UTC |
| 55c8353 | Qingqing Wang | 12 April 2018, 21:33:50 UTC | Delete screening_intron_retention_event_for_no_inner_junction.pl | 12 April 2018, 21:33:50 UTC |
| c725000 | Qingqing Wang | 12 April 2018, 21:33:41 UTC | Delete screening_intron_retention_event_for_deltachange_consistency.pl | 12 April 2018, 21:33:41 UTC |
| a721e6a | Qingqing Wang | 12 April 2018, 21:33:32 UTC | Delete screening_cassette_exon_events.pl | 12 April 2018, 21:33:32 UTC |
| 2899891 | Qingqing Wang | 12 April 2018, 21:33:23 UTC | Delete screening_MXE_events.pl | 12 April 2018, 21:33:23 UTC |
| 9bc445b | Qingqing Wang | 12 April 2018, 21:33:13 UTC | Delete screening_A5SS_A3SS_events.pl | 12 April 2018, 21:33:13 UTC |
| 06ddbd6 | Qingqing Wang | 12 April 2018, 21:33:04 UTC | Delete profiling_splicing_patterns_from_AS_events_6.pl | 12 April 2018, 21:33:04 UTC |
| 1faef15 | Qingqing Wang | 12 April 2018, 21:32:55 UTC | Delete profiling_splicing_patterns_from_AS_events_5.pl | 12 April 2018, 21:32:55 UTC |
| 2ff7b57 | Qingqing Wang | 12 April 2018, 21:32:47 UTC | Delete profiling_splicing_patterns_from_AS_events_4.pl | 12 April 2018, 21:32:47 UTC |
| 4d61807 | Qingqing Wang | 12 April 2018, 21:32:39 UTC | Delete profiling_splicing_patterns_from_AS_events_3_updated.pl | 12 April 2018, 21:32:39 UTC |
| 587a841 | Qingqing Wang | 12 April 2018, 21:32:29 UTC | Delete profiling_splicing_patterns_from_AS_events_2.pl | 12 April 2018, 21:32:29 UTC |
| 017d687 | Qingqing Wang | 12 April 2018, 21:32:20 UTC | Delete profiling_splicing_patterns_from_AS_events_1.pl | 12 April 2018, 21:32:20 UTC |
| b16ea06 | Qingqing Wang | 12 April 2018, 21:32:12 UTC | Delete profiling_splicing_patterns_from_AS_events.pl | 12 April 2018, 21:32:12 UTC |
| f779fb5 | Qingqing Wang | 12 April 2018, 21:32:03 UTC | Delete profile_overhang_from_STAR_output_step_2.pl | 12 April 2018, 21:32:03 UTC |
| 7354a4b | Qingqing Wang | 12 April 2018, 21:31:55 UTC | Delete profile_overhang_from_STAR_output_step_1.pl | 12 April 2018, 21:31:55 UTC |
| 9dde6c8 | Qingqing Wang | 12 April 2018, 21:31:45 UTC | Delete profile_AS_events_sharing_5_prime_ss.pl | 12 April 2018, 21:31:45 UTC |
| cd19928 | Qingqing Wang | 12 April 2018, 21:31:37 UTC | Delete profile_AS_events_sharing_3_prime_ss.pl | 12 April 2018, 21:31:37 UTC |
| b0f8d93 | Qingqing Wang | 12 April 2018, 21:31:28 UTC | Delete process_raw_AS_differential_output.pl | 12 April 2018, 21:31:28 UTC |
| 57a71a8 | Qingqing Wang | 12 April 2018, 21:31:19 UTC | Delete preparing_intron_retention_event_for_JUM_combine.pl | 12 April 2018, 21:31:19 UTC |
| 3a5a3c5 | Qingqing Wang | 12 April 2018, 21:31:08 UTC | Delete preparing_intron_retention_count_table_short_intron.pl | 12 April 2018, 21:31:08 UTC |
| f4994d5 | Qingqing Wang | 12 April 2018, 21:30:59 UTC | Delete preparing_intron_retention_count_table_long_intron.pl | 12 April 2018, 21:30:59 UTC |
| 2c7311e | Qingqing Wang | 12 April 2018, 21:30:51 UTC | Delete prepare_significant_long_intron_retention_event.pl | 12 April 2018, 21:30:51 UTC |
| 97fba47 | Qingqing Wang | 12 April 2018, 21:30:44 UTC | Delete prepare_count_file_after_STAR_2_pass_mapping.pl | 12 April 2018, 21:30:44 UTC |
| e3c3c66 | Qingqing Wang | 12 April 2018, 21:30:36 UTC | Delete output_reformat_JUM_4.pl | 12 April 2018, 21:30:36 UTC |
| 5210c45 | Qingqing Wang | 12 April 2018, 21:30:28 UTC | Delete output_reformat_JUM_3.pl | 12 April 2018, 21:30:28 UTC |
| 45fe76c | Qingqing Wang | 12 April 2018, 21:30:21 UTC | Delete output_reformat_JUM_2.pl | 12 April 2018, 21:30:21 UTC |
| 7522bd8 | Qingqing Wang | 12 April 2018, 21:30:07 UTC | Delete output_reformat_JUM_1.pl | 12 April 2018, 21:30:07 UTC |
| 9248012 | Qingqing Wang | 12 April 2018, 21:29:58 UTC | Delete making_junction_count_file_matching_annotation_for_JUM.pl | 12 April 2018, 21:29:58 UTC |
| dd1bf3f | Qingqing Wang | 12 April 2018, 21:29:50 UTC | Delete identify_gene_name_for_JUM_output_3.pl | 12 April 2018, 21:29:50 UTC |
| edf740b | Qingqing Wang | 12 April 2018, 21:29:38 UTC | Delete identify_gene_name_for_JUM_output_2.pl | 12 April 2018, 21:29:38 UTC |
| 7092a12 | Qingqing Wang | 12 April 2018, 21:29:29 UTC | Delete identify_gene_name_for_JUM_output_1.pl | 12 April 2018, 21:29:29 UTC |
| 37c48e2 | Qingqing Wang | 12 April 2018, 21:29:22 UTC | Delete generate_JUM_format_annotation_file_for_profiled_alternative_splicing_event_junction.pl | 12 April 2018, 21:29:22 UTC |
