| 1beff15 | ivo | 18 November 1997, 15:36:33 UTC | version information and spelling | 18 November 1997, 15:36:33 UTC |
| 487bb93 | ivo | 18 November 1997, 15:29:58 UTC | more info on parameter files | 18 November 1997, 15:29:58 UTC |
| ea6d75c | ivo | 16 November 1997, 20:18:16 UTC | backtracking could fail when using '|' or 'x' constraints | 16 November 1997, 20:18:16 UTC |
| 9785922 | ivo | 06 November 1997, 17:40:46 UTC | cosmetics | 06 November 1997, 17:40:46 UTC |
| 0bc96ce | ivo | 06 November 1997, 17:40:46 UTC | added missing fold options | 06 November 1997, 17:40:46 UTC |
| 88fb9cf | ivo | 06 November 1997, 17:40:00 UTC | added description of parameter file support | 06 November 1997, 17:40:00 UTC |
| b15d250 | ivo | 06 November 1997, 17:13:23 UTC | *** empty log message *** | 06 November 1997, 17:13:23 UTC |
| 716e613 | ivo | 06 November 1997, 17:13:12 UTC | made make_pair_table PRIVATE | 06 November 1997, 17:13:12 UTC |
| 77c3900 | ivo | 06 November 1997, 16:46:07 UTC | fixed handling of '*' and 'x' in get_array1() | 06 November 1997, 16:46:07 UTC |
| 17756f1 | ivo | 05 November 1997, 21:25:53 UTC | *** empty log message *** | 05 November 1997, 21:25:53 UTC |
| e4c3f19 | ivo | 05 November 1997, 21:20:35 UTC | added write_parameter_file(), cleanup | 05 November 1997, 21:20:35 UTC |
| 6153bc2 | ivo | 05 November 1997, 14:39:38 UTC | *** empty log message *** | 05 November 1997, 14:39:38 UTC |
| d4bf332 | ivo | 05 November 1997, 14:38:04 UTC | each special tetraloop can have different energy | 05 November 1997, 14:38:04 UTC |
| 09bc3cd | ivo | 05 November 1997, 14:04:45 UTC | no more limitation on structure length | 05 November 1997, 14:04:45 UTC |
| 2123c9e | ivo | 05 November 1997, 14:03:29 UTC | some arrays were allocated too small | 05 November 1997, 14:03:29 UTC |
| 8e4cc2b | ivo | 04 November 1997, 19:05:59 UTC | almost all arrays now dynamic | 04 November 1997, 19:05:59 UTC |
| c082502 | ivo | 04 November 1997, 18:33:10 UTC | added prototype for cost_function | 04 November 1997, 18:33:10 UTC |
| 859244e | ivo | 04 November 1997, 18:30:26 UTC | free_arrays wasn't called when using pf | 04 November 1997, 18:30:26 UTC |
| 1857a48 | ivo | 04 November 1997, 18:08:23 UTC | added one more free() | 04 November 1997, 18:08:23 UTC |
| da63fb7 | ivo | 04 November 1997, 17:53:55 UTC | *** empty log message *** | 04 November 1997, 17:53:55 UTC |
| b276767 | ivo | 04 November 1997, 17:48:34 UTC | fixed small memory leak, cosmetics | 04 November 1997, 17:48:34 UTC |
| 640ff2b | ivo | 04 November 1997, 15:15:30 UTC | cosmetics | 04 November 1997, 15:15:30 UTC |
| 649f943 | ivo | 04 November 1997, 14:53:55 UTC | cosmetic changes | 04 November 1997, 14:53:55 UTC |
| 66e230c | ivo | 04 November 1997, 13:31:21 UTC | added logML option, removed -p in favour of -d2 | 04 November 1997, 13:31:21 UTC |
| 3a86bf4 | ivo | 04 November 1997, 13:28:54 UTC | Added -P option | 04 November 1997, 13:28:54 UTC |
| 35ae905 | ivo | 03 November 1997, 19:16:18 UTC | reorgnized code, added gml output, no more fixed size arrays | 03 November 1997, 19:16:18 UTC |
| ab80712 | ivo | 03 November 1997, 19:13:07 UTC | fcstruc was not freed, cosmetic changes | 03 November 1997, 19:13:07 UTC |
| ad24a04 | ivo | 03 November 1997, 17:13:50 UTC | Initial revision | 03 November 1997, 17:13:50 UTC |
| bbbc258 | ivo | 03 November 1997, 17:12:00 UTC | *** empty log message *** | 03 November 1997, 17:12:00 UTC |
| cbc7c70 | ivo | 03 November 1997, 17:11:18 UTC | added variable `james_rule' to change behaviour for internal loops of size 2 | 03 November 1997, 17:11:18 UTC |
| 95fe8ea | ivo | 03 November 1997, 17:10:02 UTC | special tetraloop energies can have different energies | 03 November 1997, 17:10:02 UTC |
| 03319a5 | ivo | 03 November 1997, 17:05:33 UTC | new energy parameters, compatible with mfold-2.3 | 03 November 1997, 17:05:33 UTC |
| f9a1906 | ivo | 03 November 1997, 10:39:43 UTC | *** empty log message *** | 03 November 1997, 10:39:43 UTC |
| dfb918b | ivo | 01 November 1997, 21:05:00 UTC | many changes | 01 November 1997, 21:05:00 UTC |
| 55a7fb0 | ivo | 27 October 1997, 14:45:17 UTC | *** empty log message *** | 27 October 1997, 14:45:17 UTC |
| 402dae7 | ivo | 27 October 1997, 14:18:36 UTC | *** empty log message *** | 27 October 1997, 14:18:36 UTC |
| ff0bc37 | ivo | 27 October 1997, 14:12:41 UTC | several changes for updated energy model | 27 October 1997, 14:12:41 UTC |
| fac48f4 | ivo | 27 October 1997, 13:59:39 UTC | added rtype[] array | 27 October 1997, 13:59:39 UTC |
| 339794d | ivo | 27 October 1997, 13:22:33 UTC | Initial revision | 27 October 1997, 13:22:33 UTC |
| cb90e38 | ivo | 27 October 1997, 13:21:01 UTC | changed some char * into const char [] | 27 October 1997, 13:21:01 UTC |
| ecb3363 | ivo | 27 October 1997, 13:19:03 UTC | *** empty log message *** | 27 October 1997, 13:19:03 UTC |
| 055a98e | ivo | 27 October 1997, 13:10:54 UTC | *** empty log message *** | 27 October 1997, 13:10:54 UTC |
| 8c5bed9 | ivo | 27 October 1997, 12:48:44 UTC | Initial revision | 27 October 1997, 12:48:44 UTC |
| fe861dc | walter | 21 October 1997, 11:34:09 UTC | steve update | 21 October 1997, 11:34:09 UTC |
| 4d7fd00 | ivo | 13 October 1997, 17:26:30 UTC | Added -P option | 13 October 1997, 17:26:30 UTC |
| a9ccda4 | ivo | 13 October 1997, 17:16:07 UTC | Added -P option | 13 October 1997, 17:16:07 UTC |
| b87afbe | ivo | 13 October 1997, 17:15:52 UTC | added -P option | 13 October 1997, 17:15:52 UTC |
| 6236a20 | ivo | 02 October 1997, 17:31:46 UTC | added DIST_VARS_H define | 02 October 1997, 17:31:46 UTC |
| 5b18d54 | ivo | 02 October 1997, 17:29:10 UTC | includes dist_vars.h when needed | 02 October 1997, 17:29:10 UTC |
| f63655a | ivo | 01 October 1997, 16:43:48 UTC | added free_profile() | 01 October 1997, 16:43:48 UTC |
| 9ffec7a | ivo | 22 September 1997, 17:09:51 UTC | added verbose switch | 22 September 1997, 17:09:51 UTC |
| 65e1113 | ivo | 18 September 1997, 10:53:23 UTC | added stdlib.h for compilation on linux added title to dot-plots simplified postscript code to draw dot-plot grid | 18 September 1997, 10:53:23 UTC |
| 4d8f1c4 | ivo | 28 August 1997, 21:08:09 UTC | fixed allocation of pair_table[] made output more EPS conforming | 28 August 1997, 21:08:09 UTC |
| e972a86 | walter | 26 August 1997, 12:57:55 UTC | *** empty log message *** | 26 August 1997, 12:57:55 UTC |
| a0efa01 | walter | 20 August 1997, 15:06:02 UTC | *** empty log message *** | 20 August 1997, 15:06:02 UTC |
| 38865ed | walter | 18 August 1997, 19:09:32 UTC | *** empty log message *** | 18 August 1997, 19:09:32 UTC |
| 50eac30 | walter | 05 August 1997, 00:02:44 UTC | *** empty log message *** | 05 August 1997, 00:02:44 UTC |
| e6e9073 | walter | 04 August 1997, 21:05:32 UTC | Initial revision | 04 August 1997, 21:05:32 UTC |
| 1b7cacb | ivo | 28 July 1997, 19:07:58 UTC | changed to new PS_rna_plot usage | 28 July 1997, 19:07:58 UTC |
| 949a28f | ivo | 28 July 1997, 19:07:10 UTC | Initial revision | 28 July 1997, 19:07:10 UTC |
| 66676e5 | ivo | 28 July 1997, 18:59:22 UTC | PS_rna_plot now takes structure as argument, insead of using base_pair[] | 28 July 1997, 18:59:22 UTC |
| b6d5347 | ivo | 28 July 1997, 18:41:36 UTC | *** empty log message *** | 28 July 1997, 18:41:36 UTC |
| d4647fd | ivo | 28 July 1997, 17:28:55 UTC | Initial revision | 28 July 1997, 17:28:55 UTC |
| 66019c1 | ivo | 03 April 1997, 20:40:33 UTC | *** empty log message *** | 03 April 1997, 20:40:33 UTC |
| f41fddc | ivo | 24 March 1997, 23:48:44 UTC | added code to initialize pf_scale | 24 March 1997, 23:48:44 UTC |
| 0b86314 | ivo | 24 March 1997, 23:09:21 UTC | added init_length variable to make explicit initialize_fold() unnecessary | 24 March 1997, 23:09:21 UTC |
| 69d2d22 | ivo | 02 November 1996, 00:53:11 UTC | consrained folding gave wrong energy when a bp fulfilled two constraints simultaneously | 02 November 1996, 00:53:11 UTC |
| 3cf62ac | ivo | 02 November 1996, 00:45:51 UTC | *** empty log message *** | 02 November 1996, 00:45:51 UTC |
| c258ac0 | ivo | 02 November 1996, 00:34:38 UTC | *** empty log message *** | 02 November 1996, 00:34:38 UTC |
| dcd4724 | ivo | 02 November 1996, 00:26:41 UTC | Vienna-1.1b | 02 November 1996, 00:26:41 UTC |
