| d2be826 | Joep Vanlier | 05 September 2016, 14:09:30 UTC | Enabled instantaneous interruption by CTRL+C on Windows as well now | 05 September 2016, 14:09:30 UTC |
| 310b0be | Joep Vanlier | 01 September 2016, 10:49:12 UTC | Tweaks arCompareModel | 01 September 2016, 10:49:12 UTC |
| d7e0867 | Joep Vanlier | 26 August 2016, 11:53:56 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 26 August 2016, 11:53:56 UTC |
| cbdcbaf | Joep Vanlier | 26 August 2016, 11:53:48 UTC | Added optional disabling of compiler optimization as config flag | 26 August 2016, 11:53:48 UTC |
| a58ba98 | Joep Vanlier | 26 August 2016, 11:52:34 UTC | Added searching different extensions automatically if default is not found | 26 August 2016, 11:52:34 UTC |
| b8291f8 | Max Schelker | 25 August 2016, 12:26:35 UTC | fixed problems with power functions in arImportSBML | 25 August 2016, 12:26:35 UTC |
| dab3c8c | Max Schelker | 24 August 2016, 12:34:42 UTC | fixed typo in submodule urls | 24 August 2016, 12:34:42 UTC |
| 6d1724f | Max Schelker | 23 August 2016, 07:31:57 UTC | simplified version checking and SBML importer. Please let me know if it doesn't run on older versions or other OS | 23 August 2016, 07:31:57 UTC |
| 2ed0d10 | Joep Vanlier | 22 August 2016, 11:09:06 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 22 August 2016, 11:09:06 UTC |
| 564822f | Joep Vanlier | 22 August 2016, 11:09:01 UTC | Transpose arrays in arNLS if needed (needed with models with only observation functions) | 22 August 2016, 11:09:01 UTC |
| e74eca6 | Max Schelker | 22 August 2016, 09:08:42 UTC | bugfix in arImportSBML for power functions | 22 August 2016, 09:08:42 UTC |
| a04af31 | Max Schelker | 22 August 2016, 08:51:29 UTC | minor fixes in version checking and updater function | 22 August 2016, 08:51:29 UTC |
| 8c1ee01 | Joep Vanlier | 18 August 2016, 13:22:29 UTC | Added usage hint | 18 August 2016, 13:22:29 UTC |
| 8836b15 | Max Schelker | 16 August 2016, 14:46:40 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 16 August 2016, 14:46:40 UTC |
| 359238b | Max Schelker | 16 August 2016, 14:46:34 UTC | updated SBML Test suite | 16 August 2016, 14:46:34 UTC |
| 7fe936f | Joep Vanlier | 16 August 2016, 14:37:27 UTC | Removed arConfig.m | 16 August 2016, 14:37:27 UTC |
| 9cfcd42 | Max Schelker | 16 August 2016, 11:30:16 UTC | added support of initial assignments for parameters in SBML | 16 August 2016, 11:30:16 UTC |
| 78e087e | Joep Vanlier | 16 August 2016, 09:08:17 UTC | Made sure data struct is always available in fx, since the CTRL+C mechanism depends on it | 16 August 2016, 09:08:17 UTC |
| 6bd7bdf | Joep Vanlier | 15 August 2016, 09:41:02 UTC | Added zero padding when numel(residual) < numel(ar.p) to allow for large scale optimization despite insufficient data. Also minor fixes in arScaleIt.m and arInitFields.m | 15 August 2016, 09:41:02 UTC |
| f1ccc5b | Joep Vanlier | 12 August 2016, 13:15:04 UTC | Temporarily turned off instantaneous interrupts for windows until I have a chance to test it there | 12 August 2016, 13:15:04 UTC |
| a2f0075 | Joep Vanlier | 12 August 2016, 13:11:11 UTC | Added option to interrupt simulation instantaneously with CTRL+C. If this causes any problems for you, set ar.config.instantaneous_termination to zero and notify me. Thanks. | 12 August 2016, 13:11:11 UTC |
| 04ed140 | Bernhard Steiert | 12 August 2016, 10:43:57 UTC | Changed message that appears when first running D2D. | 12 August 2016, 10:43:57 UTC |
| f6aab07 | Joep Vanlier | 11 August 2016, 13:07:31 UTC | Removed obsolete variable | 11 August 2016, 13:07:31 UTC |
| e4a38de | Joep Vanlier | 11 August 2016, 13:06:35 UTC | Fix issue with multiple condition args | 11 August 2016, 13:06:35 UTC |
| 4719abc | Joep Vanlier | 10 August 2016, 18:10:13 UTC | bugfix | 10 August 2016, 18:10:13 UTC |
| eb2f9f0 | Joep Vanlier | 10 August 2016, 18:09:17 UTC | Switched default | 10 August 2016, 18:09:17 UTC |
| bd8af77 | Joep Vanlier | 10 August 2016, 17:53:01 UTC | Updated arFindData/Condition with permissive flag | 10 August 2016, 17:53:01 UTC |
| 106be13 | Joep Vanlier | 10 August 2016, 14:28:56 UTC | Added rescaling function to force scalings in numerically nice range by setting one of the scaling factors of each scaling symmetry to maxdata | 10 August 2016, 14:28:56 UTC |
| eed87a7 | Joep Vanlier | 08 August 2016, 12:16:13 UTC | Extended arExtendStr a little | 08 August 2016, 12:16:13 UTC |
| 4546542 | Joep Vanlier | 05 August 2016, 16:45:47 UTC | Implemented flux sensitivities | 05 August 2016, 16:45:47 UTC |
| 566cf82 | Joep Vanlier | 04 August 2016, 17:06:38 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 04 August 2016, 17:06:38 UTC |
| c4ca578 | Joep Vanlier | 04 August 2016, 17:05:29 UTC | Fix for scaleIt | 04 August 2016, 17:05:29 UTC |
| ec92f6a | Christian Tönsing | 02 August 2016, 14:42:52 UTC | Merge branch 'master' of https://github.com/Data2Dynamics/d2d | 02 August 2016, 14:42:52 UTC |
| 63bd06f | Christian Tönsing | 02 August 2016, 14:42:20 UTC | Bugfix for arMergeFits in order to be able to use arPlotFits afterwards Signed-off-by: Christian Tönsing <christian.toensing@fdm.uni-freiburg.de> | 02 August 2016, 14:42:20 UTC |
| 11f63ab | Max Schelker | 02 August 2016, 14:38:31 UTC | added function for loading fit backups | 02 August 2016, 14:38:36 UTC |
| 2bbe874 | Joep Vanlier | 01 August 2016, 14:31:26 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 01 August 2016, 14:31:26 UTC |
| 0c4f13b | Joep Vanlier | 01 August 2016, 14:31:21 UTC | Minor changes scaleit and argswitch | 01 August 2016, 14:31:21 UTC |
| ad9612c | Max Schelker | 01 August 2016, 10:36:44 UTC | bug fix in SBML importer, simplified version checking | 01 August 2016, 10:36:44 UTC |
| 5dd9b61 | Max Schelker | 29 July 2016, 12:44:55 UTC | bug fix in SBML importer | 29 July 2016, 12:44:55 UTC |
| 10735ac | Joep Vanlier | 25 July 2016, 14:13:10 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 25 July 2016, 14:13:10 UTC |
| 95bd56b | Joep Vanlier | 25 July 2016, 14:13:04 UTC | Fixes issue #70 | 25 July 2016, 14:13:04 UTC |
| 78d9109 | Andreas Raue | 25 July 2016, 11:56:22 UTC | Throw error if multiple PREDICTORs are defined. | 25 July 2016, 11:56:22 UTC |
| da0f5e8 | Clemens Kreutz | 20 July 2016, 10:46:25 UTC | Call of symmetryTool adapted by -t and --notPretty | 20 July 2016, 10:46:25 UTC |
| 894c5bd | Bernhard Steiert | 20 July 2016, 06:30:26 UTC | Small bugfix | 20 July 2016, 06:30:26 UTC |
| ab6c952 | Bernhard Steiert | 20 July 2016, 06:26:49 UTC | Small bugfix | 20 July 2016, 06:26:49 UTC |
| 1214da9 | Bernhard Steiert | 19 July 2016, 14:24:15 UTC | Changed trdog for L1 regularization | 19 July 2016, 14:24:15 UTC |
| 41bc330 | Clemens Kreutz | 19 July 2016, 12:46:10 UTC | arLoadData now stores raw, i.e. unnormalized and untransformed data | 19 July 2016, 12:46:10 UTC |
| c0d9c12 | Joep Vanlier | 19 July 2016, 11:43:53 UTC | fix optim = 11 | 19 July 2016, 11:43:53 UTC |
| b320685 | Joep Vanlier | 19 July 2016, 10:11:44 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 19 July 2016, 10:11:44 UTC |
| bafdbb6 | Joep Vanlier | 19 July 2016, 10:11:39 UTC | Added optional field arLoadModel.m (work in progress) | 19 July 2016, 10:11:39 UTC |
| 1c06976 | Joep Vanlier | 18 July 2016, 17:49:23 UTC | Added extra optimization option | 18 July 2016, 17:49:23 UTC |
| 64334b5 | Max Schelker | 14 July 2016, 13:27:27 UTC | changed urls from bitbucket to github wiki, added arUpdateD2D function that pulls changes from github | 14 July 2016, 13:27:27 UTC |
| 5ee55e5 | Clemens Kreutz | 14 July 2016, 09:39:18 UTC | arRecompile now can take over parameter information | 14 July 2016, 09:39:18 UTC |
| 154e84c | Joep Vanlier | 14 July 2016, 09:34:49 UTC | Bugfix arPlot. Would sometimes show old results. Whether or not to simulate has to be handled by the model cache which keeps track of actual changes in the model/configuration and not overridden by plot functions. | 14 July 2016, 09:34:49 UTC |
| 172fcb8 | Joep Vanlier | 13 July 2016, 13:08:44 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 13 July 2016, 13:08:44 UTC |
| d410043 | Joep Vanlier | 13 July 2016, 13:08:35 UTC | Helper function to identify which concentrations are negative | 13 July 2016, 13:08:35 UTC |
| ca0e05b | Max Schelker | 13 July 2016, 12:41:59 UTC | put version checking into separate function | 13 July 2016, 12:41:59 UTC |
| 3f22299 | Joep Vanlier | 13 July 2016, 09:26:23 UTC | Added feature that condition constraints can now be used betewen models as well | 13 July 2016, 09:26:23 UTC |
| 906dfd4 | Joep Vanlier | 11 July 2016, 18:00:32 UTC | Generalized arFindData a bit | 11 July 2016, 18:00:32 UTC |
| 629531a | Joep Vanlier | 11 July 2016, 16:34:28 UTC | Added helper function and description | 11 July 2016, 16:34:28 UTC |
| 8c176f0 | Joep Vanlier | 11 July 2016, 16:18:21 UTC | Added example demonstrating intercondition constraint | 11 July 2016, 16:18:21 UTC |
| fa60142 | Joep Vanlier | 11 July 2016, 16:06:01 UTC | Added relative constraints as an option for intercondition constraints. Use arAddConditionConstraints to minimize differences between conditions. | 11 July 2016, 16:06:01 UTC |
| 8c778e4 | Joep Vanlier | 11 July 2016, 15:08:28 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 11 July 2016, 15:08:28 UTC |
| 651fa31 | Joep Vanlier | 11 July 2016, 15:08:18 UTC | Updated intercondition constraints | 11 July 2016, 15:08:18 UTC |
| 3755b64 | Bernhard Steiert | 11 July 2016, 14:58:58 UTC | Added Merkle et al. to main page | 11 July 2016, 14:58:58 UTC |
| 557f1f7 | Bernhard Steiert | 11 July 2016, 14:01:54 UTC | Added Merkle et al. PCB 2016 | 11 July 2016, 14:01:54 UTC |
| ca5561b | Joep Vanlier | 11 July 2016, 11:41:19 UTC | Minor changes steadystate functions and arFindData. Added function to easily generate data files for conditions | 11 July 2016, 11:41:19 UTC |
| 2c023cd | Joep Vanlier | 08 July 2016, 15:24:29 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 08 July 2016, 15:24:29 UTC |
| 13752cf | Joep Vanlier | 08 July 2016, 15:24:23 UTC | Begun implementation of intercondition constraints (unfinished) | 08 July 2016, 15:24:23 UTC |
| 5c37bfa | Clemens Kreutz | 08 July 2016, 14:48:43 UTC | arLoad only shows folders in Results/ | 08 July 2016, 14:48:43 UTC |
| 218defa | Joep Vanlier | 08 July 2016, 12:43:20 UTC | Changes arScaleIt | 08 July 2016, 12:43:20 UTC |
| 776d4ca | Joep Vanlier | 08 July 2016, 11:09:05 UTC | Bugfix argSwitch.m for when arg is cell array | 08 July 2016, 11:09:05 UTC |
| e838827 | Joep Vanlier | 07 July 2016, 17:12:08 UTC | Bigger slack for error model | 07 July 2016, 17:12:08 UTC |
| d64423f | Joep Vanlier | 07 July 2016, 16:33:37 UTC | bugfix scaleit | 07 July 2016, 16:33:37 UTC |
| 09c0b96 | Joep Vanlier | 07 July 2016, 16:28:01 UTC | Update for scaleIt.m to allow more complex error models (beta) | 07 July 2016, 16:28:01 UTC |
| 817203d | Joep Vanlier | 07 July 2016, 12:23:22 UTC | Improvements arExport. Can now add tracked directories with arAddDirectory.m and copies mex files too. | 07 July 2016, 12:23:22 UTC |
| fcc6e0a | Joep Vanlier | 07 July 2016, 11:53:53 UTC | Corner case bugfix argswitch | 07 July 2016, 11:53:53 UTC |
| 73c3f10 | Joep Vanlier | 07 July 2016, 11:24:56 UTC | Improvements arFindData (allow exact matches) | 07 July 2016, 11:24:56 UTC |
| 36a640c | Joep Vanlier | 07 July 2016, 09:22:49 UTC | more descriptive error when error model is missing | 07 July 2016, 09:22:49 UTC |
| be6714e | Joep Vanlier | 06 July 2016, 18:13:01 UTC | Improvements scaleIt | 06 July 2016, 18:13:01 UTC |
| 56b9343 | Joep Vanlier | 06 July 2016, 14:58:17 UTC | Minor improvements scaleIt | 06 July 2016, 14:58:17 UTC |
| a893bc5 | Joep Vanlier | 06 July 2016, 14:33:52 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 06 July 2016, 14:33:52 UTC |
| 1f9ef0b | Joep Vanlier | 06 July 2016, 14:33:46 UTC | Update scaleIt. Allow multiple observables to share a single scale | 06 July 2016, 14:33:46 UTC |
| 28d2c88 | Clemens Kreutz | 05 July 2016, 22:20:42 UTC | minor improvements | 05 July 2016, 22:20:42 UTC |
| 4d0c0b9 | Clemens Kreutz | 05 July 2016, 22:18:55 UTC | Improvment, handels all conditions, tested for Raia, Becker, Bachmann, Boehm | 05 July 2016, 22:18:55 UTC |
| 742a0e7 | Joep Vanlier | 05 July 2016, 16:30:27 UTC | scaleIt.m | 05 July 2016, 16:30:27 UTC |
| ba9640d | Max Schelker | 05 July 2016, 11:00:22 UTC | updated parfor_progress | 05 July 2016, 11:00:30 UTC |
| 5c4c778 | Clemens Blank | 01 July 2016, 15:45:22 UTC | [d2d_presenter] Copy mode and creating a result when none exist should work as intended. Upgraded codemirror.js. | 01 July 2016, 15:48:13 UTC |
| 2247471 | Clemens Kreutz | 01 July 2016, 14:27:47 UTC | Switch off warning message caused by converting nontrivial formulas like x+y into sym | 01 July 2016, 14:27:47 UTC |
| 6337239 | Christian Tönsing | 01 July 2016, 14:15:51 UTC | Merge branch 'master' of https://github.com/Data2Dynamics/d2d | 01 July 2016, 14:15:51 UTC |
| b9d2109 | Christian Tönsing | 01 July 2016, 14:15:17 UTC | bugfix in arSimuData ensures that modifications in parameters, their boundaries and qFit and Log10 flags differing from preset values e.g. in model.def file are used for the simulation of new data | 01 July 2016, 14:15:17 UTC |
| 508efd6 | Clemens Kreutz | 01 July 2016, 13:38:54 UTC | Minor text/citation improvements | 01 July 2016, 13:38:54 UTC |
| d297dfc | Clemens Kreutz | 30 June 2016, 09:24:45 UTC | New option: writing the final ODEs (after substituting the fluxes) as they occur in ar.model.fx | 30 June 2016, 09:24:45 UTC |
| 48205cd | Clemens Kreutz | 30 June 2016, 07:43:40 UTC | Several models, some bugs removed, comments | 30 June 2016, 07:43:40 UTC |
| c1f7378 | Clemens Kreutz | 30 June 2016, 07:24:24 UTC | try catch preventing error if dll is blocked by OS | 30 June 2016, 07:24:24 UTC |
| b82d882 | Joep Vanlier | 28 June 2016, 15:08:32 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 28 June 2016, 15:08:32 UTC |
| d9ca0aa | Joep Vanlier | 28 June 2016, 15:08:14 UTC | Fixes issue #69, let me know if there are any (new) problems :) | 28 June 2016, 15:08:14 UTC |
| 0b5cdaa | Max Schelker | 28 June 2016, 14:45:55 UTC | Update .gitmodules | 28 June 2016, 14:45:55 UTC |
| 7cd580a | Christian Tönsing | 28 June 2016, 14:33:41 UTC | bigfix for submodules: uses https urls instead of ssh urls now, which should resolve bugs on mac and windows machines when the repo is initially cloned Signed-off-by: Christian Tönsing <christian.toensing@fdm.uni-freiburg.de> | 28 June 2016, 14:33:41 UTC |
| df847a9 | chrischdjan | 28 June 2016, 13:01:12 UTC | Bugfix of NL2SOL submodul URL | 28 June 2016, 13:01:12 UTC |
