ee01836 | John Chilton | 15 October 2020, 16:21:04 UTC | Version 20.9.0 of app (tag galaxy-app-20.9.0). | 15 October 2020, 16:21:04 UTC |
6544ce5 | John Chilton | 15 October 2020, 16:20:27 UTC | Prepare next release of galaxy-app. | 15 October 2020, 16:20:27 UTC |
b6a3c2f | John Chilton | 15 October 2020, 16:19:13 UTC | Starting work on auth 20.9.1 | 15 October 2020, 16:19:13 UTC |
b974a01 | John Chilton | 15 October 2020, 16:19:00 UTC | Version 20.9.0 of auth (tag galaxy-auth-20.9.0). | 15 October 2020, 16:19:00 UTC |
99398af | John Chilton | 15 October 2020, 16:18:48 UTC | Prep next release of galaxy-auth. | 15 October 2020, 16:18:48 UTC |
7326a92 | John Chilton | 15 October 2020, 16:17:13 UTC | Starting work on job-execution 20.9.1 | 15 October 2020, 16:17:13 UTC |
a29ebeb | John Chilton | 15 October 2020, 16:17:01 UTC | Version 20.9.0 of job-execution (tag galaxy-job-execution-20.9.0). | 15 October 2020, 16:17:01 UTC |
fe87fac | John Chilton | 15 October 2020, 16:16:48 UTC | Prep release of galaxy-job-execution. | 15 October 2020, 16:16:48 UTC |
80e1af9 | John Chilton | 15 October 2020, 16:15:30 UTC | Starting work on web-framework 20.9.1 | 15 October 2020, 16:15:30 UTC |
74eca3c | John Chilton | 15 October 2020, 16:15:17 UTC | Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0). | 15 October 2020, 16:15:17 UTC |
4723958 | John Chilton | 15 October 2020, 16:15:00 UTC | Prep the next release of galaxy-web-framework. | 15 October 2020, 16:15:00 UTC |
82de4ae | John Chilton | 15 October 2020, 16:13:40 UTC | Starting work on job-metrics 20.9.1 | 15 October 2020, 16:13:40 UTC |
8f68a21 | John Chilton | 15 October 2020, 16:13:25 UTC | Version 20.9.0 of job-metrics (tag galaxy-job-metrics-20.9.0). | 15 October 2020, 16:13:25 UTC |
7c6923d | John Chilton | 15 October 2020, 16:13:10 UTC | Prep release of job metrics for 20.09. | 15 October 2020, 16:13:10 UTC |
be2aa92 | John Chilton | 15 October 2020, 16:09:04 UTC | Starting work on data 20.9.1 | 15 October 2020, 16:09:04 UTC |
aa60284 | John Chilton | 15 October 2020, 16:08:30 UTC | Version 20.9.0 of data (tag galaxy-data-20.9.0). | 15 October 2020, 16:08:30 UTC |
b8f96b1 | John Chilton | 15 October 2020, 16:07:58 UTC | Prep 20.9.0 release of galaxy-data. | 15 October 2020, 16:07:58 UTC |
8edc8f6 | John Chilton | 15 October 2020, 16:04:37 UTC | Starting work on tool-util 20.9.1 | 15 October 2020, 16:04:37 UTC |
8f10728 | John Chilton | 15 October 2020, 16:04:17 UTC | Version 20.9.0 of tool-util (tag galaxy-tool-util-20.9.0). | 15 October 2020, 16:04:17 UTC |
c31a274 | John Chilton | 15 October 2020, 15:56:04 UTC | Starting work on objectstore 20.9.1 | 15 October 2020, 15:56:04 UTC |
f5b0d2b | John Chilton | 15 October 2020, 15:55:51 UTC | Version 20.9.0 of objectstore (tag galaxy-objectstore-20.9.0). | 15 October 2020, 15:55:51 UTC |
7c9b123 | John Chilton | 15 October 2020, 15:55:31 UTC | Prep release of galaxy-objectstore 20.9.0. | 15 October 2020, 15:55:31 UTC |
87a566e | John Chilton | 15 October 2020, 15:54:13 UTC | Starting work on selenium 20.9.1 | 15 October 2020, 15:54:13 UTC |
593d61d | John Chilton | 15 October 2020, 15:53:57 UTC | Version 20.9.0 of selenium (tag galaxy-selenium-20.9.0). | 15 October 2020, 15:53:57 UTC |
82a807e | John Chilton | 15 October 2020, 15:53:11 UTC | Prepare first release of galaxy-selenium package. | 15 October 2020, 15:53:11 UTC |
ca4831d | John Chilton | 15 October 2020, 15:50:17 UTC | Starting work on util 20.9.1 | 15 October 2020, 15:50:17 UTC |
55a8aba | John Chilton | 15 October 2020, 15:49:24 UTC | Version 20.9.0 of util (tag galaxy-util-20.9.0). | 15 October 2020, 15:49:24 UTC |
1329e43 | Marius van den Beek | 15 October 2020, 09:58:15 UTC | Merge pull request #10407 from nuwang/k8s_selector_change [20.09] K8s selector change | 15 October 2020, 09:58:15 UTC |
5d25517 | Dannon | 14 October 2020, 19:43:16 UTC | Merge pull request #10371 from mvdbeek/attach_to_pool_and_db_skip_locked [20.09] Fix db-skip-locked invocation grabbing for pool members | 14 October 2020, 19:43:16 UTC |
1869d94 | Nolan Woods | 14 October 2020, 17:59:55 UTC | Use old_id instead of id | 14 October 2020, 17:59:55 UTC |
204fe1d | Marius van den Beek | 14 October 2020, 09:03:00 UTC | Use ajs.job_wrapper.tool.id tool_id is not a valid attributes of a Tool instance | 14 October 2020, 09:03:00 UTC |
4d3db19 | Nuwan Goonasekera | 14 October 2020, 08:25:15 UTC | Remove unused variable and fix references | 14 October 2020, 08:31:43 UTC |
75c2595 | Nolan Woods | 13 October 2020, 21:11:32 UTC | Move full tool id label to annotation as it is not valid label. Fix var ref. | 14 October 2020, 08:22:48 UTC |
f284874 | Nolan Woods | 07 October 2020, 18:26:25 UTC | Add destination_id to labels | 14 October 2020, 08:22:48 UTC |
3379ea6 | Nolan Woods | 07 October 2020, 16:18:18 UTC | Fix galaxy domain name | 14 October 2020, 08:22:48 UTC |
aa1b306 | Nolan Woods | 07 October 2020, 16:13:22 UTC | Add more labels and refine | 14 October 2020, 08:22:48 UTC |
7b837f5 | Nolan Woods | 07 October 2020, 15:55:11 UTC | Add k8s recommended labels | 14 October 2020, 08:22:48 UTC |
0fe8599 | mvdbeek | 14 October 2020, 08:02:49 UTC | Drop unused import | 14 October 2020, 08:22:47 UTC |
016e231 | Nuwan Goonasekera | 14 October 2020, 03:54:39 UTC | Remove job_id from k8s job prefix | 14 October 2020, 08:22:46 UTC |
06d2830 | Nuwan Goonasekera | 13 October 2020, 19:14:20 UTC | Fix incorrect variable references in k8s runner | 14 October 2020, 08:22:03 UTC |
56a71c7 | Nuwan Goonasekera | 07 October 2020, 08:56:25 UTC | Improve handling of empty pvcs and fix job deletion | 14 October 2020, 08:22:03 UTC |
96e5aed | Nuwan Goonasekera | 06 October 2020, 14:25:42 UTC | Use generated job name to filter objects in k8s | 14 October 2020, 08:22:01 UTC |
377248f | Nolan Woods | 06 October 2020, 07:11:32 UTC | Add code to recover uid label in unlikely event k8s labelling behavior changes | 14 October 2020, 08:20:25 UTC |
ea38dc6 | Nolan Woods | 28 September 2020, 19:52:12 UTC | Change k8s runner to use k8s assigned uid to track jobs rather than name | 14 October 2020, 08:20:25 UTC |
f67d99a | mvdbeek | 14 October 2020, 08:10:20 UTC | Merge branch 'release_20.05' into release_20.09 | 14 October 2020, 08:10:20 UTC |
e3c5df3 | mvdbeek | 14 October 2020, 08:10:01 UTC | Merge branch 'release_20.01' into release_20.05 | 14 October 2020, 08:10:01 UTC |
999a2c3 | Marius van den Beek | 14 October 2020, 08:08:37 UTC | Merge pull request #10416 from nuwang/patch_k8s_job_name_length Restrict k8s max job name length to 63 and shorten prefix | 14 October 2020, 08:08:37 UTC |
23607ac | Dannon | 13 October 2020, 21:19:43 UTC | Merge pull request #10411 from mvdbeek/readonly_cache [20.09] Improve support for readonly tool caches | 13 October 2020, 21:19:43 UTC |
674eeb6 | John Chilton | 13 October 2020, 20:32:23 UTC | Merge pull request #10412 from mvdbeek/fix_compositearchive_download [20.09] Fix composite archive download one more time | 13 October 2020, 20:32:23 UTC |
2409326 | Nuwan Goonasekera | 13 October 2020, 19:05:03 UTC | Restrict k8s max job name length to 63 and shorten prefix | 13 October 2020, 19:09:35 UTC |
fadad53 | Marius van den Beek | 13 October 2020, 16:12:36 UTC | Minimize cache_file_is_writeable calls Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> | 13 October 2020, 16:12:36 UTC |
4c9fce7 | mvdbeek | 13 October 2020, 16:06:40 UTC | Fix composite archive download one more time Broken in https://github.com/galaxyproject/galaxy/pull/1033 | 13 October 2020, 16:08:12 UTC |
7dd5f17 | mvdbeek | 13 October 2020, 15:40:57 UTC | Drop redundant cache_file_is_writeable check Thanks Nicola! | 13 October 2020, 15:40:59 UTC |
3d41153 | Marius van den Beek | 13 October 2020, 15:38:01 UTC | Merge pull request #10396 from bernt-matthias/topic/20.09_discover_collection_recurse [20.09] backport #10394 to 20.09 (add recurse attribute for discover_datasets) | 13 October 2020, 15:38:01 UTC |
9f7d2a4 | Marius van den Beek | 13 October 2020, 14:46:08 UTC | Merge pull request #10403 from bgruening/py3k [20.09] Python 3 fix and client build fix for the proxy | 13 October 2020, 14:46:08 UTC |
a633f85 | mvdbeek | 13 October 2020, 14:12:05 UTC | Improve support for readonly tool caches Only create a writeable cache if the cache file is writeable, and skip access time comparison if cache is read-only (since the cache must be managed externally). | 13 October 2020, 14:12:08 UTC |
1e428e5 | Björn Grüning | 13 October 2020, 07:55:36 UTC | remove stop_err | 13 October 2020, 07:55:36 UTC |
eb13388 | Björn Grüning | 13 October 2020, 07:53:02 UTC | Update velvetg_wrapper.py | 13 October 2020, 07:53:02 UTC |
b6e419a | Marius van den Beek | 13 October 2020, 07:30:24 UTC | Merge pull request #10391 from dannon/viz-prefix-fix [20.09] Bugfix: include an index link in visualization base | 13 October 2020, 07:30:24 UTC |
f83bfa7 | Nicola Soranzo | 13 October 2020, 01:49:16 UTC | Merge branch 'release_20.05' into release_20.09 | 13 October 2020, 01:49:16 UTC |
3395d72 | Nicola Soranzo | 13 October 2020, 01:47:57 UTC | Merge branch 'release_20.01' into release_20.05 | 13 October 2020, 01:47:57 UTC |
05aa4c2 | Dannon | 13 October 2020, 01:45:55 UTC | Merge pull request #10401 from nsoranzo/release_20.01_retry_also_when_email_is_lowercase [20.01] Try case-insensitive match on email also when it's lowercase | 13 October 2020, 01:45:55 UTC |
ac184a7 | Dannon | 12 October 2020, 20:29:28 UTC | Merge pull request #10406 from jmchilton/trs_proxy_fix [20.09] Fix TRS search when Galaxy deployed behind a proxy. | 12 October 2020, 20:29:28 UTC |
1564ad8 | John Chilton | 12 October 2020, 18:31:26 UTC | Missing getAppRoot() for TRS searching. | 12 October 2020, 18:31:26 UTC |
37069e0 | Dannon | 12 October 2020, 12:39:18 UTC | Merge pull request #10384 from blankenberg/request-allow-cors [20.09] Allow GEDAs to respond to Access-Control-Request-* | 12 October 2020, 12:39:18 UTC |
98e65c5 | Björn Grüning | 12 October 2020, 11:41:57 UTC | some trick for velvetg | 12 October 2020, 11:41:57 UTC |
43943ff | Björn Grüning | 12 October 2020, 11:24:34 UTC | the byte string is also needed | 12 October 2020, 11:24:34 UTC |
9768cbf | Björn Grüning | 12 October 2020, 10:32:23 UTC | string.join is gone in py3k | 12 October 2020, 10:32:23 UTC |
150ab0d | Nicola Soranzo | 09 October 2020, 16:06:35 UTC | Try case-insensitive match on email also when it's lowercase Fix login for a user whose registered email is mixed case which tries to login with lowercase. | 10 October 2020, 19:54:01 UTC |
57d7403 | Bjoern Gruening | 10 October 2020, 10:19:16 UTC | update proxy dependencies | 10 October 2020, 10:19:16 UTC |
3e57565 | Matthias Bernt | 09 October 2020, 14:50:40 UTC | add recurse attribute for discover_datasets for output collections. seems functional but planemo complains. | 09 October 2020, 17:01:11 UTC |
9a6396d | mvdbeek | 09 October 2020, 16:48:43 UTC | Merge branch 'release_20.05' into release_20.09 | 09 October 2020, 16:48:43 UTC |
d942952 | mvdbeek | 09 October 2020, 16:45:58 UTC | Merge branch 'release_20.01' into release_20.05 | 09 October 2020, 16:45:58 UTC |
53b6003 | John Chilton | 09 October 2020, 16:43:42 UTC | Merge pull request #10390 from mvdbeek/rule_builder_fix_20.01 [20.01] Fix regex replacement wrongly appearing in rule builder | 09 October 2020, 16:43:42 UTC |
f4ee525 | Dannon Baker | 09 October 2020, 03:19:11 UTC | Bugfix: include an index link in visualization base to allow the app to derive baseUrl | 09 October 2020, 11:24:59 UTC |
b07d211 | Marius van den Beek | 09 October 2020, 09:46:08 UTC | Merge pull request #10385 from ic4f/20.09_indexes1 [20.09] Backport of script/add missing db indexes #10350 | 09 October 2020, 09:46:08 UTC |
715b370 | mvdbeek | 09 October 2020, 09:08:41 UTC | Fix regex replacement wrongly appearing in rule builder Fixes https://github.com/galaxyproject/galaxy/issues/10389 | 09 October 2020, 09:11:19 UTC |
e4156ef | Sergey Golitsynskiy | 08 October 2020, 19:23:59 UTC | Add more missing indexes (cherry picked from commit 327adb62d60c496f148ccbfdca12f67d81ae33f7) | 08 October 2020, 19:23:59 UTC |
d6ceb9c | Sergey Golitsynskiy | 08 October 2020, 19:23:47 UTC | Work around sqlite/foreign key/index bug (cherry picked from commit 8f8e25a1b7a43e9247a99e31d2cfa2991ac4704a) | 08 October 2020, 19:23:47 UTC |
d3edae0 | Sergey Golitsynskiy | 08 October 2020, 19:23:19 UTC | Let get_config() handle env override Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com> (cherry picked from commit 574fa4cb1f3f72537b6ac75205d260b97714dc6d) | 08 October 2020, 19:23:19 UTC |
84c3967 | Sergey Golitsynskiy | 08 October 2020, 19:22:38 UTC | Use passenv to pass env var to tox (cherry picked from commit 65ebbce4582719df7e6906578e4ccd3aaaa5361c) | 08 October 2020, 19:22:38 UTC |
b98677c | Sergey Golitsynskiy | 08 October 2020, 19:21:47 UTC | Skip client build Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com> (cherry picked from commit 7040c0056b8a8bd9efb765c32f3ef761de5852c3) | 08 October 2020, 19:21:47 UTC |
de98e1f | Sergey Golitsynskiy | 03 October 2020, 06:27:47 UTC | Call common_startup.sh; rebase (cherry picked from commit 2cc090847e7232bfa0f8140dc4810a0cae452665) | 08 October 2020, 19:21:03 UTC |
af0f9bb | Sergey Golitsynskiy | 03 October 2020, 02:41:42 UTC | Add github workflow; env var to override db uri (cherry picked from commit f27b4e50f665ab32737d79294e5ca7c7ce48c476) | 08 October 2020, 19:20:52 UTC |
08ad0f4 | Sergey Golitsynskiy | 02 October 2020, 15:14:53 UTC | Add script to tox.ini (cherry picked from commit f11baa411c09ad67ec2f2ea93e254e1623ad9f89) | 08 October 2020, 19:20:46 UTC |
7d75f31 | Sergey Golitsynskiy | 02 October 2020, 14:54:29 UTC | Add environment variable that forces migrations on empty database (cherry picked from commit bd8bfdfec68c7074415aade49e762f7b08bc8911) | 08 October 2020, 19:20:38 UTC |
eb89c1f | Sergey Golitsynskiy | 02 October 2020, 02:22:21 UTC | Rename missing_index > index_tuple (cherry picked from commit 20c7cdb2cb15535ea3f86c4609e2caa6466bee65) | 08 October 2020, 19:20:31 UTC |
6e6e3aa | Sergey Golitsynskiy | 02 October 2020, 02:19:10 UTC | Update scripts/check_model.py Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> (cherry picked from commit b9093e33dad7f05ede8c3fb5aac65afb41a46d5a) | 08 October 2020, 19:20:23 UTC |
9b421aa | Sergey Golitsynskiy | 08 October 2020, 19:20:09 UTC | Update scripts/check_model.py Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> (cherry picked from commit 7719f53bca2ec21344ba32e9497e5d392f705eb5) | 08 October 2020, 19:20:09 UTC |
891bbad | Sergey Golitsynskiy | 08 October 2020, 19:19:49 UTC | Add script + wrapper (cherry picked from commit 2dbfdce295e5cbcb0daddc560853967b8aaa35bd) | 08 October 2020, 19:19:49 UTC |
c948af9 | Daniel Blankenberg | 08 October 2020, 18:06:08 UTC | Allow GEDAs to respond to Access-Control-Request-* | 08 October 2020, 18:06:08 UTC |
8c8858e | Dannon Baker | 08 October 2020, 15:16:57 UTC | Merge remote-tracking branch 'upstream/release_20.05' into release_20.09 | 08 October 2020, 15:16:57 UTC |
85e0edb | Dannon Baker | 08 October 2020, 15:16:27 UTC | Merge remote-tracking branch 'upstream/release_20.01' into release_20.05 | 08 October 2020, 15:16:27 UTC |
11ea2cb | Marius van den Beek | 08 October 2020, 14:28:07 UTC | Merge pull request #10307 from nuwang/fix_k8s_job_id_clash [20.01] Ensure that k8s job ids are unique | 08 October 2020, 14:28:07 UTC |
deae07e | Nate Coraor | 07 October 2020, 16:05:44 UTC | Merge pull request #10375 from mvdbeek/data_source_fix_2 [20.09] Fixes data_source tools | 07 October 2020, 16:05:44 UTC |
a1e9541 | mvdbeek | 07 October 2020, 13:42:57 UTC | Fixes data_source tools tool_ids may be a list, so need to strip `'/'` in `get_tool_components` instead. Broken in https://github.com/galaxyproject/galaxy/pull/10332 | 07 October 2020, 13:43:56 UTC |
4989a92 | mvdbeek | 07 October 2020, 09:21:31 UTC | Setup invocation_grabber if handler_assignment method permits it Probably the better fix. | 07 October 2020, 10:02:52 UTC |
53c685d | mvdbeek | 07 October 2020, 08:56:29 UTC | Fix db-skip-locked invocation grabbing for pool members | 07 October 2020, 09:08:53 UTC |
05da1e7 | Marius van den Beek | 07 October 2020, 07:54:46 UTC | Merge pull request #10367 from natefoo/defer-metadata-strategy-resolution [20.09] Defer metadata strategy resolution in job wrapper | 07 October 2020, 07:54:46 UTC |
1f4dafb | Nate Coraor | 06 October 2020, 18:02:27 UTC | Defer metadata strategy resolution in job wrapper. | 06 October 2020, 18:02:27 UTC |