| 8f10728 | John Chilton | 15 October 2020, 16:04:17 UTC | Version 20.9.0 of tool-util (tag galaxy-tool-util-20.9.0). | 15 October 2020, 16:04:17 UTC |
| c31a274 | John Chilton | 15 October 2020, 15:56:04 UTC | Starting work on objectstore 20.9.1 | 15 October 2020, 15:56:04 UTC |
| f5b0d2b | John Chilton | 15 October 2020, 15:55:51 UTC | Version 20.9.0 of objectstore (tag galaxy-objectstore-20.9.0). | 15 October 2020, 15:55:51 UTC |
| 7c9b123 | John Chilton | 15 October 2020, 15:55:31 UTC | Prep release of galaxy-objectstore 20.9.0. | 15 October 2020, 15:55:31 UTC |
| 87a566e | John Chilton | 15 October 2020, 15:54:13 UTC | Starting work on selenium 20.9.1 | 15 October 2020, 15:54:13 UTC |
| 593d61d | John Chilton | 15 October 2020, 15:53:57 UTC | Version 20.9.0 of selenium (tag galaxy-selenium-20.9.0). | 15 October 2020, 15:53:57 UTC |
| 82a807e | John Chilton | 15 October 2020, 15:53:11 UTC | Prepare first release of galaxy-selenium package. | 15 October 2020, 15:53:11 UTC |
| ca4831d | John Chilton | 15 October 2020, 15:50:17 UTC | Starting work on util 20.9.1 | 15 October 2020, 15:50:17 UTC |
| 55a8aba | John Chilton | 15 October 2020, 15:49:24 UTC | Version 20.9.0 of util (tag galaxy-util-20.9.0). | 15 October 2020, 15:49:24 UTC |
| 1329e43 | Marius van den Beek | 15 October 2020, 09:58:15 UTC | Merge pull request #10407 from nuwang/k8s_selector_change [20.09] K8s selector change | 15 October 2020, 09:58:15 UTC |
| 5d25517 | Dannon | 14 October 2020, 19:43:16 UTC | Merge pull request #10371 from mvdbeek/attach_to_pool_and_db_skip_locked [20.09] Fix db-skip-locked invocation grabbing for pool members | 14 October 2020, 19:43:16 UTC |
| 1869d94 | Nolan Woods | 14 October 2020, 17:59:55 UTC | Use old_id instead of id | 14 October 2020, 17:59:55 UTC |
| 204fe1d | Marius van den Beek | 14 October 2020, 09:03:00 UTC | Use ajs.job_wrapper.tool.id tool_id is not a valid attributes of a Tool instance | 14 October 2020, 09:03:00 UTC |
| 4d3db19 | Nuwan Goonasekera | 14 October 2020, 08:25:15 UTC | Remove unused variable and fix references | 14 October 2020, 08:31:43 UTC |
| 75c2595 | Nolan Woods | 13 October 2020, 21:11:32 UTC | Move full tool id label to annotation as it is not valid label. Fix var ref. | 14 October 2020, 08:22:48 UTC |
| f284874 | Nolan Woods | 07 October 2020, 18:26:25 UTC | Add destination_id to labels | 14 October 2020, 08:22:48 UTC |
| 3379ea6 | Nolan Woods | 07 October 2020, 16:18:18 UTC | Fix galaxy domain name | 14 October 2020, 08:22:48 UTC |
| aa1b306 | Nolan Woods | 07 October 2020, 16:13:22 UTC | Add more labels and refine | 14 October 2020, 08:22:48 UTC |
| 7b837f5 | Nolan Woods | 07 October 2020, 15:55:11 UTC | Add k8s recommended labels | 14 October 2020, 08:22:48 UTC |
| 0fe8599 | mvdbeek | 14 October 2020, 08:02:49 UTC | Drop unused import | 14 October 2020, 08:22:47 UTC |
| 016e231 | Nuwan Goonasekera | 14 October 2020, 03:54:39 UTC | Remove job_id from k8s job prefix | 14 October 2020, 08:22:46 UTC |
| 06d2830 | Nuwan Goonasekera | 13 October 2020, 19:14:20 UTC | Fix incorrect variable references in k8s runner | 14 October 2020, 08:22:03 UTC |
| 56a71c7 | Nuwan Goonasekera | 07 October 2020, 08:56:25 UTC | Improve handling of empty pvcs and fix job deletion | 14 October 2020, 08:22:03 UTC |
| 96e5aed | Nuwan Goonasekera | 06 October 2020, 14:25:42 UTC | Use generated job name to filter objects in k8s | 14 October 2020, 08:22:01 UTC |
| 377248f | Nolan Woods | 06 October 2020, 07:11:32 UTC | Add code to recover uid label in unlikely event k8s labelling behavior changes | 14 October 2020, 08:20:25 UTC |
| ea38dc6 | Nolan Woods | 28 September 2020, 19:52:12 UTC | Change k8s runner to use k8s assigned uid to track jobs rather than name | 14 October 2020, 08:20:25 UTC |
| f67d99a | mvdbeek | 14 October 2020, 08:10:20 UTC | Merge branch 'release_20.05' into release_20.09 | 14 October 2020, 08:10:20 UTC |
| e3c5df3 | mvdbeek | 14 October 2020, 08:10:01 UTC | Merge branch 'release_20.01' into release_20.05 | 14 October 2020, 08:10:01 UTC |
| 999a2c3 | Marius van den Beek | 14 October 2020, 08:08:37 UTC | Merge pull request #10416 from nuwang/patch_k8s_job_name_length Restrict k8s max job name length to 63 and shorten prefix | 14 October 2020, 08:08:37 UTC |
| 23607ac | Dannon | 13 October 2020, 21:19:43 UTC | Merge pull request #10411 from mvdbeek/readonly_cache [20.09] Improve support for readonly tool caches | 13 October 2020, 21:19:43 UTC |
| 674eeb6 | John Chilton | 13 October 2020, 20:32:23 UTC | Merge pull request #10412 from mvdbeek/fix_compositearchive_download [20.09] Fix composite archive download one more time | 13 October 2020, 20:32:23 UTC |
| 2409326 | Nuwan Goonasekera | 13 October 2020, 19:05:03 UTC | Restrict k8s max job name length to 63 and shorten prefix | 13 October 2020, 19:09:35 UTC |
| fadad53 | Marius van den Beek | 13 October 2020, 16:12:36 UTC | Minimize cache_file_is_writeable calls Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> | 13 October 2020, 16:12:36 UTC |
| 4c9fce7 | mvdbeek | 13 October 2020, 16:06:40 UTC | Fix composite archive download one more time Broken in https://github.com/galaxyproject/galaxy/pull/1033 | 13 October 2020, 16:08:12 UTC |
| 7dd5f17 | mvdbeek | 13 October 2020, 15:40:57 UTC | Drop redundant cache_file_is_writeable check Thanks Nicola! | 13 October 2020, 15:40:59 UTC |
| 3d41153 | Marius van den Beek | 13 October 2020, 15:38:01 UTC | Merge pull request #10396 from bernt-matthias/topic/20.09_discover_collection_recurse [20.09] backport #10394 to 20.09 (add recurse attribute for discover_datasets) | 13 October 2020, 15:38:01 UTC |
| 9f7d2a4 | Marius van den Beek | 13 October 2020, 14:46:08 UTC | Merge pull request #10403 from bgruening/py3k [20.09] Python 3 fix and client build fix for the proxy | 13 October 2020, 14:46:08 UTC |
| a633f85 | mvdbeek | 13 October 2020, 14:12:05 UTC | Improve support for readonly tool caches Only create a writeable cache if the cache file is writeable, and skip access time comparison if cache is read-only (since the cache must be managed externally). | 13 October 2020, 14:12:08 UTC |
| 1e428e5 | Björn Grüning | 13 October 2020, 07:55:36 UTC | remove stop_err | 13 October 2020, 07:55:36 UTC |
| eb13388 | Björn Grüning | 13 October 2020, 07:53:02 UTC | Update velvetg_wrapper.py | 13 October 2020, 07:53:02 UTC |
| b6e419a | Marius van den Beek | 13 October 2020, 07:30:24 UTC | Merge pull request #10391 from dannon/viz-prefix-fix [20.09] Bugfix: include an index link in visualization base | 13 October 2020, 07:30:24 UTC |
| f83bfa7 | Nicola Soranzo | 13 October 2020, 01:49:16 UTC | Merge branch 'release_20.05' into release_20.09 | 13 October 2020, 01:49:16 UTC |
| 3395d72 | Nicola Soranzo | 13 October 2020, 01:47:57 UTC | Merge branch 'release_20.01' into release_20.05 | 13 October 2020, 01:47:57 UTC |
| 05aa4c2 | Dannon | 13 October 2020, 01:45:55 UTC | Merge pull request #10401 from nsoranzo/release_20.01_retry_also_when_email_is_lowercase [20.01] Try case-insensitive match on email also when it's lowercase | 13 October 2020, 01:45:55 UTC |
| ac184a7 | Dannon | 12 October 2020, 20:29:28 UTC | Merge pull request #10406 from jmchilton/trs_proxy_fix [20.09] Fix TRS search when Galaxy deployed behind a proxy. | 12 October 2020, 20:29:28 UTC |
| 1564ad8 | John Chilton | 12 October 2020, 18:31:26 UTC | Missing getAppRoot() for TRS searching. | 12 October 2020, 18:31:26 UTC |
| 37069e0 | Dannon | 12 October 2020, 12:39:18 UTC | Merge pull request #10384 from blankenberg/request-allow-cors [20.09] Allow GEDAs to respond to Access-Control-Request-* | 12 October 2020, 12:39:18 UTC |
| 98e65c5 | Björn Grüning | 12 October 2020, 11:41:57 UTC | some trick for velvetg | 12 October 2020, 11:41:57 UTC |
| 43943ff | Björn Grüning | 12 October 2020, 11:24:34 UTC | the byte string is also needed | 12 October 2020, 11:24:34 UTC |
| 9768cbf | Björn Grüning | 12 October 2020, 10:32:23 UTC | string.join is gone in py3k | 12 October 2020, 10:32:23 UTC |
| 150ab0d | Nicola Soranzo | 09 October 2020, 16:06:35 UTC | Try case-insensitive match on email also when it's lowercase Fix login for a user whose registered email is mixed case which tries to login with lowercase. | 10 October 2020, 19:54:01 UTC |
| 57d7403 | Bjoern Gruening | 10 October 2020, 10:19:16 UTC | update proxy dependencies | 10 October 2020, 10:19:16 UTC |
| 3e57565 | Matthias Bernt | 09 October 2020, 14:50:40 UTC | add recurse attribute for discover_datasets for output collections. seems functional but planemo complains. | 09 October 2020, 17:01:11 UTC |
| 9a6396d | mvdbeek | 09 October 2020, 16:48:43 UTC | Merge branch 'release_20.05' into release_20.09 | 09 October 2020, 16:48:43 UTC |
| d942952 | mvdbeek | 09 October 2020, 16:45:58 UTC | Merge branch 'release_20.01' into release_20.05 | 09 October 2020, 16:45:58 UTC |
| 53b6003 | John Chilton | 09 October 2020, 16:43:42 UTC | Merge pull request #10390 from mvdbeek/rule_builder_fix_20.01 [20.01] Fix regex replacement wrongly appearing in rule builder | 09 October 2020, 16:43:42 UTC |
| f4ee525 | Dannon Baker | 09 October 2020, 03:19:11 UTC | Bugfix: include an index link in visualization base to allow the app to derive baseUrl | 09 October 2020, 11:24:59 UTC |
| b07d211 | Marius van den Beek | 09 October 2020, 09:46:08 UTC | Merge pull request #10385 from ic4f/20.09_indexes1 [20.09] Backport of script/add missing db indexes #10350 | 09 October 2020, 09:46:08 UTC |
| 715b370 | mvdbeek | 09 October 2020, 09:08:41 UTC | Fix regex replacement wrongly appearing in rule builder Fixes https://github.com/galaxyproject/galaxy/issues/10389 | 09 October 2020, 09:11:19 UTC |
| e4156ef | Sergey Golitsynskiy | 08 October 2020, 19:23:59 UTC | Add more missing indexes (cherry picked from commit 327adb62d60c496f148ccbfdca12f67d81ae33f7) | 08 October 2020, 19:23:59 UTC |
| d6ceb9c | Sergey Golitsynskiy | 08 October 2020, 19:23:47 UTC | Work around sqlite/foreign key/index bug (cherry picked from commit 8f8e25a1b7a43e9247a99e31d2cfa2991ac4704a) | 08 October 2020, 19:23:47 UTC |
| d3edae0 | Sergey Golitsynskiy | 08 October 2020, 19:23:19 UTC | Let get_config() handle env override Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com> (cherry picked from commit 574fa4cb1f3f72537b6ac75205d260b97714dc6d) | 08 October 2020, 19:23:19 UTC |
| 84c3967 | Sergey Golitsynskiy | 08 October 2020, 19:22:38 UTC | Use passenv to pass env var to tox (cherry picked from commit 65ebbce4582719df7e6906578e4ccd3aaaa5361c) | 08 October 2020, 19:22:38 UTC |
| b98677c | Sergey Golitsynskiy | 08 October 2020, 19:21:47 UTC | Skip client build Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com> (cherry picked from commit 7040c0056b8a8bd9efb765c32f3ef761de5852c3) | 08 October 2020, 19:21:47 UTC |
| de98e1f | Sergey Golitsynskiy | 03 October 2020, 06:27:47 UTC | Call common_startup.sh; rebase (cherry picked from commit 2cc090847e7232bfa0f8140dc4810a0cae452665) | 08 October 2020, 19:21:03 UTC |
| af0f9bb | Sergey Golitsynskiy | 03 October 2020, 02:41:42 UTC | Add github workflow; env var to override db uri (cherry picked from commit f27b4e50f665ab32737d79294e5ca7c7ce48c476) | 08 October 2020, 19:20:52 UTC |
| 08ad0f4 | Sergey Golitsynskiy | 02 October 2020, 15:14:53 UTC | Add script to tox.ini (cherry picked from commit f11baa411c09ad67ec2f2ea93e254e1623ad9f89) | 08 October 2020, 19:20:46 UTC |
| 7d75f31 | Sergey Golitsynskiy | 02 October 2020, 14:54:29 UTC | Add environment variable that forces migrations on empty database (cherry picked from commit bd8bfdfec68c7074415aade49e762f7b08bc8911) | 08 October 2020, 19:20:38 UTC |
| eb89c1f | Sergey Golitsynskiy | 02 October 2020, 02:22:21 UTC | Rename missing_index > index_tuple (cherry picked from commit 20c7cdb2cb15535ea3f86c4609e2caa6466bee65) | 08 October 2020, 19:20:31 UTC |
| 6e6e3aa | Sergey Golitsynskiy | 02 October 2020, 02:19:10 UTC | Update scripts/check_model.py Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> (cherry picked from commit b9093e33dad7f05ede8c3fb5aac65afb41a46d5a) | 08 October 2020, 19:20:23 UTC |
| 9b421aa | Sergey Golitsynskiy | 08 October 2020, 19:20:09 UTC | Update scripts/check_model.py Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> (cherry picked from commit 7719f53bca2ec21344ba32e9497e5d392f705eb5) | 08 October 2020, 19:20:09 UTC |
| 891bbad | Sergey Golitsynskiy | 08 October 2020, 19:19:49 UTC | Add script + wrapper (cherry picked from commit 2dbfdce295e5cbcb0daddc560853967b8aaa35bd) | 08 October 2020, 19:19:49 UTC |
| c948af9 | Daniel Blankenberg | 08 October 2020, 18:06:08 UTC | Allow GEDAs to respond to Access-Control-Request-* | 08 October 2020, 18:06:08 UTC |
| 8c8858e | Dannon Baker | 08 October 2020, 15:16:57 UTC | Merge remote-tracking branch 'upstream/release_20.05' into release_20.09 | 08 October 2020, 15:16:57 UTC |
| 85e0edb | Dannon Baker | 08 October 2020, 15:16:27 UTC | Merge remote-tracking branch 'upstream/release_20.01' into release_20.05 | 08 October 2020, 15:16:27 UTC |
| 11ea2cb | Marius van den Beek | 08 October 2020, 14:28:07 UTC | Merge pull request #10307 from nuwang/fix_k8s_job_id_clash [20.01] Ensure that k8s job ids are unique | 08 October 2020, 14:28:07 UTC |
| deae07e | Nate Coraor | 07 October 2020, 16:05:44 UTC | Merge pull request #10375 from mvdbeek/data_source_fix_2 [20.09] Fixes data_source tools | 07 October 2020, 16:05:44 UTC |
| a1e9541 | mvdbeek | 07 October 2020, 13:42:57 UTC | Fixes data_source tools tool_ids may be a list, so need to strip `'/'` in `get_tool_components` instead. Broken in https://github.com/galaxyproject/galaxy/pull/10332 | 07 October 2020, 13:43:56 UTC |
| 4989a92 | mvdbeek | 07 October 2020, 09:21:31 UTC | Setup invocation_grabber if handler_assignment method permits it Probably the better fix. | 07 October 2020, 10:02:52 UTC |
| 53c685d | mvdbeek | 07 October 2020, 08:56:29 UTC | Fix db-skip-locked invocation grabbing for pool members | 07 October 2020, 09:08:53 UTC |
| 05da1e7 | Marius van den Beek | 07 October 2020, 07:54:46 UTC | Merge pull request #10367 from natefoo/defer-metadata-strategy-resolution [20.09] Defer metadata strategy resolution in job wrapper | 07 October 2020, 07:54:46 UTC |
| 1f4dafb | Nate Coraor | 06 October 2020, 18:02:27 UTC | Defer metadata strategy resolution in job wrapper. | 06 October 2020, 18:02:27 UTC |
| c6a39d3 | Marius van den Beek | 06 October 2020, 17:31:53 UTC | Merge pull request #10339 from cat-bro/fix_admin_installed_tool_list_newer_version_tag [20.09] Fix 'Newer Version Available' tag in admin tool management section | 06 October 2020, 17:31:53 UTC |
| ba6ea1b | Dannon | 06 October 2020, 14:34:00 UTC | Merge pull request #10362 from hexylena/fix-chrome-gtn-webhook [20.09] Bugfix: chrome forgets scroll offset upon show/hide cycle of GTN in Galaxy webhook | 06 October 2020, 14:34:00 UTC |
| fe4f81e | Dannon Baker | 06 October 2020, 14:33:03 UTC | Standard quotes | 06 October 2020, 14:33:03 UTC |
| 488baee | Nuwan Goonasekera | 02 October 2020, 11:43:42 UTC | Use generated uuid instead of galaxy job id for k8s job name Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com> | 06 October 2020, 13:32:54 UTC |
| 3b42717 | Nuwan Goonasekera | 27 September 2020, 20:04:58 UTC | Ensure that k8s job ids are unique | 06 October 2020, 13:32:43 UTC |
| 60a83c4 | mvdbeek | 06 October 2020, 08:03:24 UTC | Also order repository revisions on the backend | 06 October 2020, 08:46:13 UTC |
| f7697a0 | cat-bro | 01 October 2020, 04:41:25 UTC | sort installed tools by ctx_rev prior to selecting the first from each name/owner sort installed tools by ctx_rev prior to selecting the first from each name/owner add some ;;;;; prettier --write another prettier file | 06 October 2020, 08:46:13 UTC |
| a681ebf | Helena Rasche | 06 October 2020, 08:45:35 UTC | Fix chrome-only scrolling bug with GTN webhook Content is reflown upon display changes, meaning that in chrome the iframe fails to retain it's original scroll offset. This fixes it by using visibility in place of display, thus preventing a content reflow. | 06 October 2020, 08:45:35 UTC |
| d99b7ed | John Chilton | 05 October 2020, 17:04:07 UTC | Merge pull request #10360 from mvdbeek/skip_workflow_invocation_step_update_subquery [20.09] Don't use subquery to update workflow invocation step update time | 05 October 2020, 17:04:07 UTC |
| 1c76fbd | Marius van den Beek | 05 October 2020, 15:18:12 UTC | Drop parens Thanks Dannon! Co-authored-by: Dannon <dannon.baker@gmail.com> | 05 October 2020, 15:18:12 UTC |
| ecf34f3 | mvdbeek | 05 October 2020, 13:55:46 UTC | Don't use subquery to update workflow invocation step update time Thanks Nate, I don't think the subqeury was needed. | 05 October 2020, 13:55:49 UTC |
| 048e3b7 | mvdbeek | 02 October 2020, 15:41:29 UTC | Merge branch 'release_20.05' into release_20.09 | 02 October 2020, 15:41:29 UTC |
| dcb329b | Marius van den Beek | 02 October 2020, 15:04:21 UTC | Merge pull request #10284 from OlegZharkov/quickfix_20.09 [20.09] fix folder path | 02 October 2020, 15:04:21 UTC |
| 076e640 | John Chilton | 02 October 2020, 14:57:38 UTC | Merge pull request #10321 from nsoranzo/release_20.05_fix_use_shared_home_with_docker [20.05] Respect ``use_shared_home="false"`` when running tools in container | 02 October 2020, 14:57:38 UTC |
| 9a15b1a | Marius van den Beek | 02 October 2020, 13:39:35 UTC | Merge pull request #10344 from mvdbeek/add_missing_index_migrations [20.09] Add missing index migrations | 02 October 2020, 13:39:35 UTC |
| 79a018f | mvdbeek | 02 October 2020, 13:37:45 UTC | Merge branch 'release_20.05' into release_20.09 | 02 October 2020, 13:37:45 UTC |
| 71e01da | mvdbeek | 02 October 2020, 13:32:35 UTC | Merge branch 'release_20.01' into release_20.05 | 02 October 2020, 13:32:35 UTC |
| 311cbe4 | Marius van den Beek | 02 October 2020, 13:31:07 UTC | Merge pull request #10248 from dannon/refactor-logout [20.09] Logout fix and refactoring | 02 October 2020, 13:31:07 UTC |
