bc5b8be | Shifu Chen | 16 March 2018, 10:11:38 UTC | Update README.md | 16 March 2018, 10:11:38 UTC |
dbd9920 | Shifu Chen | 16 March 2018, 10:09:22 UTC | Update README.md | 16 March 2018, 10:09:22 UTC |
3eecb26 | Shifu Chen | 16 March 2018, 02:37:59 UTC | Update README.md | 16 March 2018, 02:37:59 UTC |
ccb1dc7 | Shifu Chen | 14 March 2018, 14:38:00 UTC | support low complexity filtering | 14 March 2018, 14:38:00 UTC |
5215aa8 | Shifu Chen | 14 March 2018, 04:05:20 UTC | filter zero-length reads even when length filter is not enabled | 14 March 2018, 04:05:20 UTC |
a0e7738 | Shifu Chen | 13 March 2018, 06:54:51 UTC | fix the issue of lowercase UMI https://github.com/OpenGene/fastp/issues/41 | 13 March 2018, 06:54:51 UTC |
5093f17 | Shifu Chen | 12 March 2018, 09:20:23 UTC | Merge pull request #38 from bgruening/patch-1 use https instead of http | 12 March 2018, 09:20:23 UTC |
a8861db | Björn Grüning | 12 March 2018, 08:57:25 UTC | use https instead of http | 12 March 2018, 08:57:25 UTC |
82eb296 | Shifu Chen | 09 March 2018, 02:01:55 UTC | Update README.md | 09 March 2018, 02:01:55 UTC |
078ebc0 | Shifu Chen | 09 March 2018, 01:59:17 UTC | Update README.md | 09 March 2018, 01:59:17 UTC |
aeb7c32 | Shifu Chen | 09 March 2018, 00:49:41 UTC | Perform polyG --> polyX trimming in 3'ends when they are both enabled | 09 March 2018, 00:49:41 UTC |
1d20ad1 | Shifu Chen | 07 March 2018, 03:33:06 UTC | trim the polyX having a different last base in 3' end https://github.com/OpenGene/fastp/issues/33 | 07 March 2018, 03:33:06 UTC |
986bd76 | Shifu Chen | 06 March 2018, 14:35:58 UTC | support polyX trimming in 3' ends https://github.com/OpenGene/fastp/issues/33 | 06 March 2018, 14:35:58 UTC |
f1c0ac0 | Shifu Chen | 06 March 2018, 06:45:17 UTC | change default overlap length requirement for overlap based PE adapter trimming | 06 March 2018, 06:45:17 UTC |
7b788c9 | Shifu Chen | 06 March 2018, 06:44:23 UTC | change trimBySequence from backward method to forward method | 06 March 2018, 06:44:23 UTC |
8746036 | Shifu Chen | 04 March 2018, 07:09:55 UTC | improve quality cutting in 5' and 3' ends | 04 March 2018, 07:09:55 UTC |
b7e120f | Shifu Chen | 02 March 2018, 00:37:27 UTC | Update README.md | 02 March 2018, 00:37:27 UTC |
9780591 | Shifu Chen | 02 March 2018, 00:36:01 UTC | Update README.md | 02 March 2018, 00:36:01 UTC |
64898d5 | Shifu Chen | 04 February 2018, 09:19:06 UTC | Update README.md | 04 February 2018, 09:19:06 UTC |
a9c5b64 | Shifu Chen | 04 February 2018, 09:15:24 UTC | Update README.md | 04 February 2018, 09:15:24 UTC |
f874201 | Shifu Chen | 04 February 2018, 09:07:11 UTC | add poly_g_min_len option https://github.com/OpenGene/fastp/issues/25 | 04 February 2018, 09:07:11 UTC |
8d146e9 | Shifu Chen | 04 February 2018, 08:43:50 UTC | add -v/--version to show version info https://github.com/OpenGene/fastp/issues/21 | 04 February 2018, 08:43:50 UTC |
5ce9b6a | Shifu Chen | 04 February 2018, 08:22:02 UTC | support R1 adapter, R2 adapter given respectively for PE data | 04 February 2018, 08:22:02 UTC |
ddfc3af | Shifu Chen | 04 February 2018, 07:26:37 UTC | use adapter sequence to trim adapter for PE data when failed to find overlap | 04 February 2018, 07:26:37 UTC |
0e61ca4 | Shifu Chen | 11 January 2018, 02:45:44 UTC | Update README.md | 11 January 2018, 02:45:44 UTC |
775ffe9 | Shifu Chen | 11 January 2018, 02:41:27 UTC | Add Conda information to README | 11 January 2018, 02:41:27 UTC |
4c5fa30 | Shifu Chen | 19 December 2017, 02:35:06 UTC | fix crash caused by returning NULL from trimAndCut | 19 December 2017, 02:35:06 UTC |
1e0b626 | Shifu Chen | 14 December 2017, 08:58:45 UTC | set default length requirement from 30 to 15 for miRNA sequencing | 14 December 2017, 08:58:45 UTC |
161299b | Shifu Chen | 14 December 2017, 08:44:01 UTC | for SE adapter trimming, continue to search when the adapter sequence is wholely contained | 14 December 2017, 08:44:01 UTC |
05a04a6 | Shifu Chen | 13 December 2017, 03:56:06 UTC | set version to v12.0 | 13 December 2017, 03:56:06 UTC |
a53aa21 | Shifu Chen | 13 December 2017, 03:52:37 UTC | support hide/show | 13 December 2017, 03:52:37 UTC |
666e5dc | Shifu Chen | 12 December 2017, 13:25:53 UTC | minor revision for report | 12 December 2017, 13:26:30 UTC |
61b79dd | Shifu Chen | 12 December 2017, 12:29:39 UTC | Update README.md | 12 December 2017, 12:29:39 UTC |
b897ded | Shifu Chen | 12 December 2017, 12:28:22 UTC | update readme for overrepresented sequence analysis | 12 December 2017, 12:28:22 UTC |
5c12797 | Shifu Chen | 12 December 2017, 10:18:00 UTC | update README for overrepresented sequence analysis | 12 December 2017, 10:18:00 UTC |
2f213f8 | Shifu Chen | 12 December 2017, 10:04:05 UTC | overrepresented sequence analyss completed | 12 December 2017, 10:04:05 UTC |
d89c3df | Shifu Chen | 12 December 2017, 07:31:13 UTC | add overrepresentation analysis | 12 December 2017, 07:31:13 UTC |
589188c | Shifu Chen | 10 December 2017, 06:38:25 UTC | add seqlen evaluator | 10 December 2017, 06:38:25 UTC |
eeaa34b | Shifu Chen | 10 December 2017, 05:35:24 UTC | add evaluateOverRepSeqs | 10 December 2017, 05:35:24 UTC |
04dfaee | Shifu Chen | 07 December 2017, 13:09:08 UTC | set version to v0.11.0 | 07 December 2017, 13:09:08 UTC |
a50468c | Shifu Chen | 07 December 2017, 13:02:51 UTC | show GC content in summary table https://github.com/OpenGene/fastp/issues/15 | 07 December 2017, 13:02:51 UTC |
58c8636 | Shifu Chen | 07 December 2017, 10:06:08 UTC | Show base content percentage in base content graph | 07 December 2017, 10:06:08 UTC |
fb3fae8 | Shifu Chen | 07 December 2017, 06:46:23 UTC | report kmer counting in JSON | 07 December 2017, 06:46:23 UTC |
c7d8c33 | Shifu Chen | 07 December 2017, 06:20:43 UTC | add kmer counting and display | 07 December 2017, 06:21:07 UTC |
1f42298 | Shifu Chen | 05 December 2017, 06:43:52 UTC | Update README.md | 05 December 2017, 06:43:52 UTC |
1369f95 | Shifu Chen | 05 December 2017, 06:21:52 UTC | add polyG tail trimming | 05 December 2017, 06:21:52 UTC |
9c3207b | Shifu Chen | 01 December 2017, 01:46:11 UTC | revise UMI example | 01 December 2017, 01:46:11 UTC |
2dc4a98 | Shifu Chen | 01 December 2017, 01:41:22 UTC | make prefix configurable for UMI, and no prefix for default | 01 December 2017, 01:41:22 UTC |
c2413a5 | Shifu Chen | 30 November 2017, 03:05:47 UTC | set version to v0.9.1 | 30 November 2017, 03:05:47 UTC |
f6739da | Shifu Chen | 30 November 2017, 03:05:11 UTC | limit base numbers in evaluation for the long read cases | 30 November 2017, 03:05:11 UTC |
842207e | Shifu Chen | 30 November 2017, 02:58:43 UTC | revise read number evaluation | 30 November 2017, 02:58:43 UTC |
9fda5c5 | Shifu Chen | 30 November 2017, 02:22:47 UTC | change K/M/G/T carry from 1024 to 1000 | 30 November 2017, 02:22:47 UTC |
abfe9bb | Shifu Chen | 29 November 2017, 09:00:41 UTC | Update README.md | 29 November 2017, 09:00:41 UTC |
22487b8 | Shifu Chen | 29 November 2017, 03:28:57 UTC | support per_index / per_read for UMI processing | 29 November 2017, 03:28:57 UTC |
31989da | Shifu Chen | 29 November 2017, 03:04:08 UTC | Update README.md | 29 November 2017, 03:04:08 UTC |
951ad84 | Shifu Chen | 29 November 2017, 02:59:23 UTC | Update README.md | 29 November 2017, 02:59:23 UTC |
1e5eb32 | Shifu Chen | 29 November 2017, 02:52:14 UTC | Update README.md | 29 November 2017, 02:52:14 UTC |
979d416 | Shifu Chen | 29 November 2017, 02:38:45 UTC | Update README.md | 29 November 2017, 02:38:45 UTC |
2d17d67 | Shifu Chen | 29 November 2017, 02:17:18 UTC | Update README.md | 29 November 2017, 02:17:18 UTC |
6865e2c | Shifu Chen | 29 November 2017, 02:08:41 UTC | Update README.md | 29 November 2017, 02:08:41 UTC |
191daf1 | Shifu Chen | 29 November 2017, 01:57:09 UTC | Update README.md | 29 November 2017, 01:57:09 UTC |
207816d | Shifu Chen | 29 November 2017, 01:42:13 UTC | Update README.md | 29 November 2017, 01:42:13 UTC |
ee65540 | Shifu Chen | 29 November 2017, 01:17:18 UTC | Update README.md | 29 November 2017, 01:17:18 UTC |
0fdd5f7 | Shifu Chen | 29 November 2017, 01:15:21 UTC | Update README.md | 29 November 2017, 01:15:21 UTC |
9a532da | Shifu Chen | 28 November 2017, 13:57:03 UTC | set version to v0.9.0 | 28 November 2017, 13:57:03 UTC |
7c9acd2 | Shifu Chen | 28 November 2017, 13:43:40 UTC | update read number evaluation | 28 November 2017, 13:43:40 UTC |
4c5dde2 | Shifu Chen | 28 November 2017, 13:18:50 UTC | update README | 28 November 2017, 13:18:50 UTC |
ae4ff32 | Shifu Chen | 28 November 2017, 12:40:10 UTC | add option to change the report title https://github.com/OpenGene/fastp/issues/4 | 28 November 2017, 12:40:10 UTC |
5ebd686 | Shifu Chen | 28 November 2017, 10:53:56 UTC | update README | 28 November 2017, 10:53:56 UTC |
d43f9e9 | Shifu Chen | 28 November 2017, 10:51:02 UTC | fix trimFront | 28 November 2017, 10:51:02 UTC |
f8c5d5a | Shifu Chen | 28 November 2017, 10:44:49 UTC | add UMI processing | 28 November 2017, 10:44:49 UTC |
7ac1e68 | Shifu Chen | 26 November 2017, 13:22:34 UTC | fix a typo of split | 26 November 2017, 13:22:34 UTC |
e780193 | Shifu Chen | 26 November 2017, 13:15:13 UTC | set version to v0.8.0 | 26 November 2017, 13:15:13 UTC |
5065f3b | Shifu Chen | 26 November 2017, 13:12:47 UTC | Update README.md | 26 November 2017, 13:12:47 UTC |
1513189 | Shifu Chen | 26 November 2017, 13:11:05 UTC | Update README.md | 26 November 2017, 13:11:05 UTC |
5f34f11 | Shifu Chen | 26 November 2017, 13:03:12 UTC | support splitting by lines https://github.com/OpenGene/fastp/issues/8 | 26 November 2017, 13:03:12 UTC |
be19db3 | Shifu Chen | 23 November 2017, 07:28:52 UTC | set version to v0.7.0 | 23 November 2017, 07:28:52 UTC |
e1e6907 | Shifu Chen | 23 November 2017, 06:13:43 UTC | raise a warning if -5/-3 is not enabled but -W/-M is enabled | 23 November 2017, 06:13:43 UTC |
1c2ca61 | Shifu Chen | 23 November 2017, 03:12:07 UTC | add base corrector files | 23 November 2017, 03:12:07 UTC |
2ac5a84 | Shifu Chen | 23 November 2017, 02:52:31 UTC | add base correction by overlap analysis for PE data | 23 November 2017, 02:52:31 UTC |
c77878a | Shifu Chen | 22 November 2017, 00:38:40 UTC | set version to v0.6.1 | 22 November 2017, 00:38:40 UTC |
a7bd3b2 | Shifu Chen | 22 November 2017, 00:37:26 UTC | remove fastq with/without quality testing a fix of https://github.com/OpenGene/fastp/issues/6 | 22 November 2017, 00:37:26 UTC |
8ba96ad | Shifu Chen | 20 November 2017, 01:44:15 UTC | set version to v0.6.0 | 20 November 2017, 01:44:15 UTC |
708c858 | Shifu Chen | 20 November 2017, 01:40:58 UTC | smoothing for long read plotting | 20 November 2017, 01:40:58 UTC |
605e833 | Shifu Chen | 19 November 2017, 14:08:06 UTC | optimize plotting for long reads using down sampling | 19 November 2017, 14:08:06 UTC |
73b9109 | Shifu Chen | 19 November 2017, 12:47:00 UTC | fix a crash issue for Stats::merge when cycles are not identical for different threads | 19 November 2017, 12:47:00 UTC |
160806b | Shifu Chen | 18 November 2017, 13:39:13 UTC | extend buffer for Stats if read length is longer than previous | 18 November 2017, 13:39:13 UTC |
4269cbb | Shifu Chen | 18 November 2017, 07:38:29 UTC | use log plotting if reads are too long (i.e. nanopore data) | 18 November 2017, 07:38:29 UTC |
d7ceb7c | Shifu Chen | 18 November 2017, 07:10:33 UTC | fix cycle calculation | 18 November 2017, 07:10:33 UTC |
44dae01 | Shifu Chen | 18 November 2017, 05:07:06 UTC | a fix for a potential crash for Stats | 18 November 2017, 05:07:06 UTC |
a343a82 | Shifu Chen | 18 November 2017, 03:45:47 UTC | revise FastqReader to support long read | 18 November 2017, 03:45:47 UTC |
fddfeb8 | Shifu Chen | 14 November 2017, 00:35:38 UTC | Update README.md | 14 November 2017, 00:35:38 UTC |
93a4702 | Shifu Chen | 13 November 2017, 11:41:54 UTC | Update README.md | 13 November 2017, 11:41:54 UTC |
889b708 | Shifu Chen | 13 November 2017, 11:40:25 UTC | Update README.md | 13 November 2017, 11:40:25 UTC |
16bdee2 | Shifu Chen | 10 November 2017, 23:51:45 UTC | Update README.md | 10 November 2017, 23:51:45 UTC |
44a6eaa | Shifu Chen | 10 November 2017, 15:34:25 UTC | fix memory header file issue for Linux | 10 November 2017, 15:34:25 UTC |
7455694 | Shifu Chen | 10 November 2017, 15:28:00 UTC | set version to v0.5.0 | 10 November 2017, 15:28:00 UTC |
b9f1c9c | Shifu Chen | 10 November 2017, 15:26:08 UTC | Update README.md | 10 November 2017, 15:26:08 UTC |
5c1e3c8 | Shifu Chen | 10 November 2017, 15:17:22 UTC | support automatic adapter detection for SE data | 10 November 2017, 15:17:22 UTC |
6979ebc | Shifu Chen | 09 November 2017, 02:24:48 UTC | set version to v0.4.0 | 09 November 2017, 02:24:48 UTC |