| adf7f5c | Keith Alcock | 20 October 2020, 05:25:16 UTC | Setting version to 1.6.1 | 20 October 2020, 05:25:16 UTC |
| 755fdcb | Keith Alcock | 20 October 2020, 05:15:21 UTC | Merge pull request #710 from clulab/kwalcock-rerelease Update release process | 20 October 2020, 05:15:21 UTC |
| 2016e49 | Keith Alcock | 20 October 2020, 03:54:15 UTC | Update release process | 20 October 2020, 03:54:15 UTC |
| e92943b | Keith Alcock | 19 October 2020, 23:56:52 UTC | Setting version to 1.6.2-SNAPSHOT | 19 October 2020, 23:56:52 UTC |
| f6b2a20 | Keith Alcock | 19 October 2020, 23:56:52 UTC | Setting version to 1.6.1 | 19 October 2020, 23:56:52 UTC |
| 695eb56 | Keith Alcock | 19 October 2020, 23:50:06 UTC | Merge pull request #708 from clulab/kwalcock-noSkip161 Don't skip version 1.6.1 | 19 October 2020, 23:50:06 UTC |
| 9d19e74 | Keith Alcock | 19 October 2020, 21:51:22 UTC | Don't skip version 1.6.1 Contents of CHANGES was deceptive | 19 October 2020, 21:51:22 UTC |
| d061610 | Keith Alcock | 19 October 2020, 17:52:58 UTC | Merge pull request #706 from clulab/development Update scala, sbt, plugins, bioresources, processors | 19 October 2020, 17:52:58 UTC |
| 52c9425 | Keith Alcock | 16 October 2020, 22:49:39 UTC | Revert more to 2.12.8 | 16 October 2020, 22:49:39 UTC |
| cb154f2 | Keith Alcock | 16 October 2020, 21:58:39 UTC | Revert to Scala 2.12.8 | 16 October 2020, 21:58:39 UTC |
| ea71480 | Keith Alcock | 16 October 2020, 19:15:17 UTC | Merge pull request #707 from clulab/kwalcock-updateScala Update Scala in build.sbt and docker | 16 October 2020, 19:15:17 UTC |
| f8c7ce0 | Keith Alcock | 16 October 2020, 18:18:59 UTC | Fix runMain | 16 October 2020, 18:18:59 UTC |
| 522d439 | Keith Alcock | 16 October 2020, 17:58:02 UTC | Update versions in docker file | 16 October 2020, 17:58:02 UTC |
| fd160dc | Keith Alcock | 16 October 2020, 17:50:40 UTC | Update to Scala 2.12.12 | 16 October 2020, 17:50:40 UTC |
| 66ee58a | Keith Alcock | 16 October 2020, 16:52:27 UTC | Update version, CHANGES | 16 October 2020, 16:52:27 UTC |
| 5e5087b | Keith Alcock | 16 October 2020, 16:38:46 UTC | Merge pull request #705 from clulab/kwalcock-reduceMemory Revert testing to multiple sbt runs | 16 October 2020, 16:38:46 UTC |
| 6538b8e | Keith Alcock | 16 October 2020, 15:53:51 UTC | Revert testing to multiple sbt runs It will take longer, but garbage collection works better | 16 October 2020, 15:53:51 UTC |
| 8e76a89 | Keith Alcock | 16 October 2020, 15:48:31 UTC | Merge pull request #704 from clulab/kwalcock-updateBioresources Bump bioresources to v1.1.34 | 16 October 2020, 15:48:31 UTC |
| 3ca5053 | Keith Alcock | 16 October 2020, 05:32:28 UTC | Bump bioresources to v1.1.34 | 16 October 2020, 15:45:50 UTC |
| e370e86 | Keith Alcock | 16 October 2020, 05:30:49 UTC | Merge pull request #702 from clulab/kwalcock-pgpBackoff Revert pgp for compatibility | 16 October 2020, 05:30:49 UTC |
| da94011 | Keith Alcock | 16 October 2020, 05:29:11 UTC | Revert pgp for compatibility | 16 October 2020, 05:29:11 UTC |
| 950941c | Keith Alcock | 15 October 2020, 23:43:28 UTC | Merge pull request #701 from clulab/kwalcock-updateProcessorsScala Update processors and Scala version | 15 October 2020, 23:43:28 UTC |
| ddb4bfa | Keith Alcock | 15 October 2020, 23:24:55 UTC | Remove test code for model no longer used | 15 October 2020, 23:24:55 UTC |
| faf3f54 | Keith Alcock | 15 October 2020, 22:29:31 UTC | Test the serialized model | 15 October 2020, 22:29:31 UTC |
| c7d9ea7 | Keith Alcock | 15 October 2020, 19:44:55 UTC | Fix comment on test | 15 October 2020, 19:44:55 UTC |
| 6032ba0 | Keith Alcock | 15 October 2020, 18:26:42 UTC | Use latest 2.11 Scala version | 15 October 2020, 18:26:42 UTC |
| df2ceec | Keith Alcock | 15 October 2020, 18:20:24 UTC | Update processors and Scala version | 15 October 2020, 18:20:24 UTC |
| 429b959 | Keith Alcock | 15 October 2020, 18:15:09 UTC | Merge pull request #700 from clulab/kwalcock-fixApiTest Account for mM disappearing | 15 October 2020, 18:15:09 UTC |
| 82756fa | Keith Alcock | 15 October 2020, 18:11:58 UTC | Account for mM disappearing | 15 October 2020, 18:11:58 UTC |
| a6759b5 | Keith Alcock | 14 October 2020, 23:52:24 UTC | Merge pull request #699 from clulab/kwalcock-updateBatch Streamline and convert batch files/shell scripts | 14 October 2020, 23:52:24 UTC |
| bc18b7c | Keith Alcock | 14 October 2020, 23:51:18 UTC | Merge pull request #698 from clulab/kwalcock-updateJava Work around Java 11 compilation problem | 14 October 2020, 23:51:18 UTC |
| 9e82b14 | Keith Alcock | 14 October 2020, 23:48:54 UTC | Merge pull request #697 from clulab/kwalcock-updateSbt Update sbt and plugins | 14 October 2020, 23:48:54 UTC |
| 1aa54e6 | Keith Alcock | 14 October 2020, 23:43:14 UTC | Add batch files | 14 October 2020, 23:43:14 UTC |
| 0ffef30 | Keith Alcock | 09 October 2020, 22:26:55 UTC | Use PolaritySuite for runPolarityTest | 14 October 2020, 23:41:28 UTC |
| 82da8c1 | Keith Alcock | 14 October 2020, 18:29:36 UTC | Work around Java 11 compilation problem | 14 October 2020, 23:38:46 UTC |
| fd9bf65 | Keith Alcock | 14 October 2020, 23:32:23 UTC | Merge pull request #696 from clulab/proonto Merge proonto to development instead of master | 14 October 2020, 23:32:23 UTC |
| e785262 | Keith Alcock | 14 October 2020, 23:22:33 UTC | Avoid output of \r | 14 October 2020, 23:22:33 UTC |
| 3fe753b | Keith Alcock | 14 October 2020, 23:10:10 UTC | Don't depend on SNAPSHOT, at least not now | 14 October 2020, 23:10:10 UTC |
| 36bbea8 | Mihai Surdeanu | 14 October 2020, 01:39:40 UTC | "fixed" failing test | 14 October 2020, 01:39:40 UTC |
| 141ff3f | Mihai Surdeanu | 14 October 2020, 00:08:34 UTC | just shells and config | 14 October 2020, 00:08:34 UTC |
| e53e8c4 | kwalcock | 09 October 2020, 16:00:56 UTC | Update sbt and plugins | 09 October 2020, 16:00:56 UTC |
| 5777d66 | Mihai Surdeanu | 12 September 2020, 03:31:13 UTC | Merge pull request #694 from clulab/kwalcock-updateProcessors Update processors | 12 September 2020, 03:31:13 UTC |
| b36a0a2 | Keith Alcock | 12 September 2020, 01:34:47 UTC | Update processors | 12 September 2020, 01:34:47 UTC |
| cb71708 | Ben Gyori | 07 September 2020, 00:35:29 UTC | Update tests for changes | 07 September 2020, 00:35:29 UTC |
| 3cfb587 | Jake Wolfe | 02 September 2020, 23:48:26 UTC | Updated TestEntities.scala for protein ontology protein fragments | 02 September 2020, 23:48:26 UTC |
| 577e94f | Mihai Surdeanu | 01 September 2020, 20:36:15 UTC | removed unneeded script | 01 September 2020, 20:36:15 UTC |
| bff9a2f | Mihai Surdeanu | 01 September 2020, 18:22:27 UTC | Update shell | 01 September 2020, 18:22:27 UTC |
| 8ffe9a2 | Mihai Surdeanu | 30 August 2020, 23:25:14 UTC | Merge pull request #692 from clulab/docker_fix Fix ubuntu version | 30 August 2020, 23:25:14 UTC |
| 5181c14 | Ben Gyori | 30 August 2020, 22:41:03 UTC | Fix ubuntu version | 30 August 2020, 22:41:03 UTC |
| 0f96a82 | Mihai Surdeanu | 25 August 2020, 22:02:24 UTC | Added protein fragments to grounding. | 25 August 2020, 22:02:24 UTC |
| 2c02ec7 | Mihai Surdeanu | 30 June 2020, 20:37:30 UTC | Merge pull request #690 from clulab/master_polarity_sync_20200630 change processor version and fix synchronization | 30 June 2020, 20:37:30 UTC |
| cc8edb0 | Zhengzhong Liang | 30 June 2020, 19:05:15 UTC | change processor version and fix synchronization | 30 June 2020, 19:05:15 UTC |
| 04f3345 | Mihai Surdeanu | 24 June 2020, 14:12:29 UTC | Merge pull request #689 from clulab/master_polarity_sync_20200623 fix synchronization issue | 24 June 2020, 14:12:29 UTC |
| fef8db0 | Zhengzhong Liang | 24 June 2020, 05:01:00 UTC | fix synchronization issue | 24 June 2020, 05:01:00 UTC |
| 677da1e | Mihai Surdeanu | 26 May 2020, 20:14:27 UTC | Setting version to 1.6.1-SNAPSHOT | 26 May 2020, 20:14:27 UTC |
| ba0b206 | Mihai Surdeanu | 26 May 2020, 20:14:26 UTC | Setting version to 1.6.0 | 26 May 2020, 20:14:26 UTC |
| a90542b | Mihai Surdeanu | 26 May 2020, 20:07:41 UTC | CHANGES | 26 May 2020, 20:07:41 UTC |
| 6f8a7ae | Mihai Surdeanu | 26 May 2020, 20:05:29 UTC | Merge pull request #687 from clulab/master_crash_fix_20200512 Master crash fix 20200512 | 26 May 2020, 20:05:29 UTC |
| 7efd9c3 | Zhengzhong Liang | 26 May 2020, 17:55:18 UTC | fix code review request before merging | 26 May 2020, 17:55:18 UTC |
| 296607e | Zhengzhong Liang | 26 May 2020, 04:29:46 UTC | clear debugging code for merge | 26 May 2020, 04:29:46 UTC |
| 05fd542 | Zhengzhong Liang | 25 May 2020, 22:13:46 UTC | debug | 25 May 2020, 22:13:46 UTC |
| 3d815a0 | Zhengzhong Liang | 22 May 2020, 20:39:46 UTC | fix synchronization in more functions | 22 May 2020, 20:39:46 UTC |
| db9c225 | Zhengzhong Liang | 22 May 2020, 18:36:02 UTC | fix synchronize issue | 22 May 2020, 18:36:02 UTC |
| 4248b3b | Zhengzhong Liang | 21 May 2020, 18:49:30 UTC | change dynet memory size to 512 | 21 May 2020, 18:49:30 UTC |
| 4a5a27a | Zhengzhong Liang | 20 May 2020, 03:16:51 UTC | eliminiate thread limit for debugging for debugging | 20 May 2020, 03:16:51 UTC |
| ccb1270 | Zhengzhong Liang | 19 May 2020, 17:00:39 UTC | increase dynet size to 4096 | 19 May 2020, 17:00:39 UTC |
| e11a5eb | Zhengzhong Liang | 19 May 2020, 16:53:16 UTC | try to debug on the full corpus | 19 May 2020, 16:53:16 UTC |
| 7ca4fb6 | Zhengzhong Liang | 18 May 2020, 23:32:50 UTC | fix the dynet memory issue and test | 18 May 2020, 23:32:50 UTC |
| 727082d | Zhengzhong Liang | 18 May 2020, 23:22:28 UTC | fix the dynet memory issue and test | 18 May 2020, 23:22:28 UTC |
| 9e84581 | Zhengzhong Liang | 16 May 2020, 18:13:53 UTC | debug | 16 May 2020, 18:13:53 UTC |
| 554640f | Mihai Surdeanu | 07 May 2020, 15:53:18 UTC | Merge pull request #686 from clulab/mesh Integrate Disease entity type and grounding | 07 May 2020, 15:53:18 UTC |
| c379909 | Ben Gyori | 07 May 2020, 14:44:58 UTC | Change to released version of bioresources | 07 May 2020, 14:44:58 UTC |
| 6a695e9 | Ben Gyori | 07 May 2020, 03:01:00 UTC | Remove test added accidentally | 07 May 2020, 03:01:00 UTC |
| 4d7445b | Ben Gyori | 07 May 2020, 02:37:04 UTC | Add disease to entities.yml | 07 May 2020, 02:37:04 UTC |
| a39f7aa | Ben Gyori | 07 May 2020, 02:30:41 UTC | Some fixes in MeSH integration | 07 May 2020, 02:30:41 UTC |
| 15050d4 | Ben Gyori | 06 May 2020, 15:21:00 UTC | Integrate MeSH diseases | 06 May 2020, 15:36:42 UTC |
| aa4405a | Mihai Surdeanu | 30 April 2020, 14:45:02 UTC | Merge pull request #684 from clulab/conf_output Remove deprecated output formats from conf and export | 30 April 2020, 14:45:02 UTC |
| d60793a | Mihai Surdeanu | 30 April 2020, 03:17:27 UTC | Merge pull request #683 from clulab/conversion Conversion | 30 April 2020, 03:17:27 UTC |
| 12b8a19 | Ben Gyori | 30 April 2020, 03:12:36 UTC | Remove deprecated export formats from exports | 30 April 2020, 03:12:36 UTC |
| de41284 | Ben Gyori | 30 April 2020, 03:05:30 UTC | Remove deprecated output formats from config | 30 April 2020, 03:05:30 UTC |
| 72f2d20 | Ben Gyori | 30 April 2020, 02:08:14 UTC | Add one shared variable | 30 April 2020, 02:08:14 UTC |
| ba72f2b | Ben Gyori | 30 April 2020, 01:59:59 UTC | Merge some rules and change names | 30 April 2020, 01:59:59 UTC |
| 0fcfc69 | Ben Gyori | 30 April 2020, 01:33:30 UTC | Add two more trigger words | 30 April 2020, 01:33:30 UTC |
| 3739ade | Ben Gyori | 30 April 2020, 00:53:26 UTC | Relax controller requirement in rules | 30 April 2020, 00:53:26 UTC |
| d98a6f1 | Ben Gyori | 29 April 2020, 19:41:10 UTC | Handle Conversion in fries output | 29 April 2020, 19:41:10 UTC |
| 516e31e | Ben Gyori | 29 April 2020, 19:18:20 UTC | Fix arguments complete check for conversions | 29 April 2020, 19:18:20 UTC |
| c950bd9 | Ben Gyori | 29 April 2020, 00:16:19 UTC | Make required entities more strict | 29 April 2020, 00:16:19 UTC |
| 2936ff5 | Ben Gyori | 28 April 2020, 03:17:43 UTC | Update and generalize some more rules | 28 April 2020, 03:17:43 UTC |
| 227b3b7 | Ben Gyori | 28 April 2020, 02:50:31 UTC | Update two more rules and change all to BioChemicalEntity | 28 April 2020, 02:50:31 UTC |
| dcc3cbd | Ben Gyori | 28 April 2020, 02:38:31 UTC | Workaround to make extractions work | 28 April 2020, 02:38:31 UTC |
| ae979d3 | Ben Gyori | 28 April 2020, 02:38:16 UTC | Update one rule to new syntax | 28 April 2020, 02:38:16 UTC |
| 510fb35 | John Bachman | 27 April 2020, 20:17:34 UTC | Conversion tests | 28 April 2020, 02:17:59 UTC |
| 5af6242 | John Bachman | 26 May 2017, 17:56:41 UTC | More conversion rules | 28 April 2020, 02:17:58 UTC |
| ce456d4 | John Bachman | 25 May 2017, 22:21:21 UTC | Add conversion rule file | 28 April 2020, 02:17:58 UTC |
| 9e4534f | John Bachman | 25 May 2017, 20:58:08 UTC | Update taxonomy and events_master | 28 April 2020, 02:17:58 UTC |
| 3ebcb2e | Mihai Surdeanu | 25 April 2020, 19:34:40 UTC | Merge pull request #681 from clulab/master_cleaning_20200409 fix bug, now loading c2i and w2i as resources | 25 April 2020, 19:34:40 UTC |
| 835e8c5 | Zhengzhong Liang | 25 April 2020, 04:32:09 UTC | fix bug, now loading c2i w2i as resources | 25 April 2020, 04:32:09 UTC |
| cab16a1 | Mihai Surdeanu | 24 April 2020, 23:30:00 UTC | Merge pull request #679 from clulab/chebi Integrating ChEBI, GO and new stopwords from bioresources | 24 April 2020, 23:30:00 UTC |
| e7181c5 | Ben Gyori | 24 April 2020, 20:20:50 UTC | Use released bioresources 1.1.32 | 24 April 2020, 20:20:50 UTC |
| 6ee66d0 | Ben Gyori | 24 April 2020, 15:53:03 UTC | Change another test that now has more extractions | 24 April 2020, 16:20:47 UTC |
