| ca1f50a | Richard Samuels | 18 November 2021, 23:39:43 UTC | Fix cancellation in SciDB 21.8 SciDB 21.8 no longer supports executing a query without preparing it first. The only place this was done was in cancel() in the shim. This commit modifies executeQuery() so that it always prepares the query before executing it, making cancellation compatible with SciDB 21.8. | 19 November 2021, 03:21:46 UTC |
| 9643f4c | Rares Vernica (baron, fedora) | 19 November 2021, 02:30:58 UTC | Use a second session to check for running queries Otherwise the list() query waits until the delay query finishes. So, the failure in the cancel request is never caught | 19 November 2021, 02:30:58 UTC |
| 9e46c0d | Rares Vernica (baron, fedora) | 19 November 2021, 02:30:17 UTC | Keep Shim output to detect test start failures | 19 November 2021, 02:30:17 UTC |
| 18d98f4 | Rares Vernica (baron, fedora) | 11 November 2021, 17:26:12 UTC | Fix syntax/typo | 11 November 2021, 17:26:12 UTC |
| 5dbb5cc | Rares Vernica (baron, fedora) | 10 November 2021, 23:38:57 UTC | Use devtoolset-9 to build shim and required plugins | 10 November 2021, 23:38:57 UTC |
| 02f8256 | Rares Vernica (baron, fedora) | 10 November 2021, 23:24:38 UTC | Use SciDB 21.8 images, update ref 19.11->21.8 | 10 November 2021, 23:26:09 UTC |
| edbc3a1 | rvernica | 10 November 2021, 23:21:25 UTC | Merge pull request #119 from Paradigm4/v19.11 GitHub Actions support | 10 November 2021, 23:21:25 UTC |
| 0041e4a | Rares Vernica (baron, fedora) | 10 November 2021, 18:03:57 UTC | Drop setup/action script, use bundled Bash scripts to setup SciDB | 10 November 2021, 18:03:57 UTC |
| e3b0306 | Rares Vernica (baron, fedora) | 05 November 2021, 23:37:08 UTC | Reap oldest timeout session based on last updated time * Update reap test https://app.clickup.com/t/1uf849g | 05 November 2021, 23:37:08 UTC |
| 6037287 | Rares Vernica (baron, fedora) | 05 November 2021, 23:06:48 UTC | Seed random number generator to get unique session IDs at restart | 05 November 2021, 23:06:48 UTC |
| 7c8bddd | Rares Vernica (baron, fedora) | 05 November 2021, 23:06:29 UTC | Minor formatting | 05 November 2021, 23:06:29 UTC |
| acd6877 | Rares Vernica (baron, fedora) | 05 November 2021, 19:19:23 UTC | Add test for session reap | 05 November 2021, 19:19:23 UTC |
| 5cbc89c | Rares Vernica (baron, fedora) | 05 November 2021, 00:33:19 UTC | Remove Travis badge | 05 November 2021, 00:33:19 UTC |
| 3178960 | rvernica | 05 November 2021, 00:31:25 UTC | Setup GitHub Actions to run Shim tests on SciDB EE (#118) * Initial workflow and actions script * Checkout code * Install and start SciDB * Use Python, compile and install Shim * Add all tests * Fix env var set syntax * Checkout and build superfunpack * Set separate checkout path, add debug step to verify contents * Fix paths in Docker, install suprefunpack, split shim install steps * Remove redundant "shell: bash" * Use env to set environment variable * Add env variable for 'test' target as well * Use image with 3rd party libs, compile and load accelerated_io_tools * Fix starting Shim * Set LD_LIBRARY_PATH * Add Badge in README | 05 November 2021, 00:31:25 UTC |
| b96ac1b | Jason Kinchen | 10 September 2021, 16:33:19 UTC | boost_system no longer needed on link line. | 10 September 2021, 16:33:19 UTC |
| 465eb67 | Jason Kinchen | 10 September 2021, 16:24:24 UTC | Makefile changes for using boost169 | 10 September 2021, 16:24:24 UTC |
| e921061 | Jason Kinchen | 09 September 2021, 18:08:23 UTC | Makefile changes to support devtoolset-9 for v21.8 | 09 September 2021, 18:08:23 UTC |
| 0ece1b8 | Rares Vernica | 24 July 2020, 00:18:12 UTC | Simplify Arrow version tracking | 24 July 2020, 00:18:12 UTC |
| 3c815f3 | Rares Vernica | 23 July 2020, 23:39:18 UTC | Install Arrow 16 from official repo | 24 July 2020, 00:05:01 UTC |
| 57ed382 | Rares Vernica | 23 July 2020, 23:14:56 UTC | Use latest accelerated_io_tools and curretn supported Arrow * Use env var for accelerated_io_tools version | 24 July 2020, 00:04:46 UTC |
| 3bac34a | Alex Poliakov | 21 July 2020, 03:57:12 UTC | Merge pull request #116 from Paradigm4/skip-service Flag to allow for systemctl failures during installation | 21 July 2020, 03:57:12 UTC |
| 77e6d71 | Rares Vernica | 20 July 2020, 19:10:15 UTC | Use EXTRA_SCIDB_LIBS_SYSTEMCTL_FAIL_OK only for specific commands | 20 July 2020, 19:10:15 UTC |
| 96b1ca1 | Rares Vernica | 20 July 2020, 17:59:59 UTC | Skip setting up Shim service if environmen variable is set Set: SKIP_SHIM_SERVICE=true to skip setting up Shim service during extra-scidb-libs package installation. | 20 July 2020, 17:59:59 UTC |
| edb6316 | Rares Vernica | 20 July 2020, 17:51:04 UTC | Update 19.3 references to 19.11 | 20 July 2020, 17:51:04 UTC |
| 8b45059 | Rares Vernica | 16 July 2020, 01:18:01 UTC | Fix for https://github.com/Paradigm4/extra-scidb-libs/issues/31 * Check if configuration file exists and only create it if it does not exist * Check if certificate file exists and only create it if it does not exist Need to test in extra-scidb-libs | 16 July 2020, 01:20:20 UTC |
| d8c659d | Rares Vernica | 15 July 2020, 03:15:37 UTC | Fix left-over reference to shim.service * Discovered while investigating https://github.com/Paradigm4/extra-scidb-libs/issues/26 | 15 July 2020, 03:17:16 UTC |
| 9275c83 | Alex Poliakov | 08 July 2020, 02:12:54 UTC | Merge pull request #114 from Paradigm4/autocommit-no-client-commit Shim no longer completes an auto-commit query | 08 July 2020, 02:12:54 UTC |
| 8a304c7 | Dave Gosselin | 07 July 2020, 19:27:07 UTC | Shim won't request an autocommit query to complete. Clients shouldn't ask SciDB to complete a query that is marked auto-commit. Certain DDL, like create_array queries, auto-commit by design. Tested for memory leaks with 'valgrind --leak-check=full' while running the script found here: https://github.com/rvernica/docker-library/issues/12#issuecomment-652387862 | 07 July 2020, 19:50:56 UTC |
| 6088902 | Rares Vernica | 27 May 2020, 03:11:22 UTC | Fix link to SciDB release | 27 May 2020, 03:11:22 UTC |
| 15d4e37 | rvernica | 11 May 2020, 03:36:47 UTC | Merge pull request #113 from Paradigm4/travis Refactor Travis setup and tests | 11 May 2020, 03:36:47 UTC |
| 549dc10 | Rares Vernica | 11 May 2020, 02:38:51 UTC | Use all test queries to reduce load | 11 May 2020, 02:38:51 UTC |
| ff43141 | Rares Vernica | 11 May 2020, 02:19:43 UTC | Full scale up of tests | 11 May 2020, 02:19:43 UTC |
| 7670ac7 | Rares Vernica | 11 May 2020, 02:10:21 UTC | Use single query, don't remove arrays, add comments | 11 May 2020, 02:10:21 UTC |
| ccc1829 | Rares Vernica | 10 May 2020, 02:59:27 UTC | Re-factor docker setup in script * Run basic and extended tests * Test in Debian image as well | 10 May 2020, 02:59:27 UTC |
| 2c4a4e2 | Rares Vernica | 10 May 2020, 02:56:14 UTC | Re-factor and split tests in two * test_basic do not require any plug-ins * test requires aio and superfunpack plugins | 10 May 2020, 02:56:14 UTC |
| 9c95dd5 | Rares Vernica | 10 May 2020, 02:56:00 UTC | Refactor test | 10 May 2020, 02:56:00 UTC |
| dc75bfa | Rares Vernica | 10 May 2020, 02:51:15 UTC | Add flag to run tests with and without AIO * Add extra configuration file with AIO enabled * Use new configuration file if AIO=aio flag is set in environment | 10 May 2020, 02:52:02 UTC |
| 9fb79fa | Rares Vernica | 09 May 2020, 22:01:13 UTC | Fix env var name to Docker image version | 09 May 2020, 22:01:13 UTC |
| 2601ee7 | Rares Vernica | 09 May 2020, 21:55:26 UTC | Add CentOS required volumes | 09 May 2020, 21:55:26 UTC |
| cf57f8f | Rares Vernica | 09 May 2020, 21:50:38 UTC | Disable verbose printout | 09 May 2020, 21:50:38 UTC |
| c3b6e5e | Rares Vernica | 09 May 2020, 21:40:14 UTC | Try build without sudo, dist and group | 09 May 2020, 21:40:14 UTC |
| 312511c | Rares Vernica | 08 May 2020, 16:08:34 UTC | Start and stop Shim in CentOS 7 | 08 May 2020, 16:08:34 UTC |
| 0174078 | Rares Vernica | 08 May 2020, 04:29:47 UTC | Add Travis build for CentOS 7 | 08 May 2020, 04:29:47 UTC |
| 16fe182 | Rares Vernica | 08 May 2020, 01:01:24 UTC | Fix typo, fix #106 | 08 May 2020, 01:01:24 UTC |
| 005afc7 | Rares Vernica | 06 May 2020, 04:00:57 UTC | Update SciDb version badge | 06 May 2020, 04:00:57 UTC |
| 86f390f | Rares Vernica | 06 May 2020, 03:57:00 UTC | Use latest release ofr aio_tools 19.11.2 | 06 May 2020, 03:57:00 UTC |
| 6372327 | rvernica | 30 April 2020, 21:39:52 UTC | Merge pull request #110 from Paradigm4/v19.11-cxxflags CXXFLAGS clean-up | 30 April 2020, 21:39:52 UTC |
| f87f3e7 | rvernica | 29 April 2020, 04:05:06 UTC | Merge pull request #112 from Paradigm4/v19.11 v19.11 promotion to master | 29 April 2020, 04:05:06 UTC |
| a37e227 | Rares Vernica | 31 March 2020, 01:52:20 UTC | Merge commit '3b75a358b8ea4c264cc9771548e2c317f91d6af5' into v19.11-cxxflags | 31 March 2020, 01:52:20 UTC |
| 8b24e87 | Rares Vernica | 31 March 2020, 01:52:10 UTC | Merge commit '30a863622a44d53a5dfea07d3ccfe0fb48bac151' into v19.11-cxxflags | 31 March 2020, 01:52:10 UTC |
| 12939a7 | Rares Vernica | 31 March 2020, 01:51:58 UTC | Merge commit '02c2a3ac415db5998ca20e7693650327630e528b' into v19.11-cxxflags | 31 March 2020, 01:51:58 UTC |
| 3b75a35 | rvernica | 30 March 2020, 18:28:27 UTC | Reduce pytest threads even more | 30 March 2020, 18:28:27 UTC |
| 30a8636 | rvernica | 30 March 2020, 18:11:29 UTC | Reduce number of threads even further for pytest | 30 March 2020, 18:11:29 UTC |
| 02c2a3a | rvernica | 30 March 2020, 17:52:11 UTC | Half the number of concurent threads in pytest | 30 March 2020, 17:52:11 UTC |
| 06cfb0f | Rares Vernica | 28 March 2020, 02:52:57 UTC | Merge commit 'f87b01a' into v19.11-cxxflags | 28 March 2020, 02:52:57 UTC |
| f87b01a | Rares Vernica | 28 March 2020, 02:48:27 UTC | Fix Travis syntax | 28 March 2020, 02:48:27 UTC |
| fc01189 | Rares Vernica | 28 March 2020, 02:46:44 UTC | Separate build image and SciDB version | 28 March 2020, 02:46:44 UTC |
| 62d6a1b | Rares Vernica | 28 March 2020, 02:38:04 UTC | Clean up CXXFLAGS - avoid overwrite and duplication | 28 March 2020, 02:38:04 UTC |
| 21a5bc7 | Rares Vernica | 28 March 2020, 02:35:39 UTC | Fix test using new list() result schema | 28 March 2020, 02:35:39 UTC |
| 9a75f35 | Rares Vernica | 28 March 2020, 02:35:17 UTC | Use Xenial image and cleanup | 28 March 2020, 02:35:17 UTC |
| 98b172e | Rares Vernica | 28 March 2020, 01:15:53 UTC | No need to install gcc/g++, already installed in Docker container | 28 March 2020, 01:15:53 UTC |
| 9c6801e | Rares Vernica | 28 March 2020, 01:15:22 UTC | Try and stop shim service since it is now available in Docker image | 28 March 2020, 01:15:22 UTC |
| da953bb | Rares Vernica | 28 March 2020, 01:14:48 UTC | Use v19.11 branch of accelerated_io_tools | 28 March 2020, 01:14:48 UTC |
| f3af570 | Rares Vernica | 27 March 2020, 19:19:11 UTC | Merge branch 'master' into v19.11 * Include #108 in v19.11 | 27 March 2020, 19:19:11 UTC |
| 4bdb49d | rvernica | 27 March 2020, 19:06:05 UTC | Merge pull request #108 from CarlsonP4/master Use default gcc if version >= 4.9 | 27 March 2020, 19:06:05 UTC |
| e330f5a | Brian Carlson | 19 March 2020, 17:38:28 UTC | Use default gcc if version >= 4.9 On ubuntu 16.04, the default /usr/bin/g{cc,++} compiler is used to build SciDB. The c++ ABI chaged with the libstdc++ library has changed for g++ 5. Since SciDB uses the NEW ABI, the compilation of shim with the older g++-4.9 is unable to use the symbols from the New ABI. (That is, the libstdc++ is backwards compatible, but the libstdc++ used by gcc 4.9 is not forward compatible) g++ (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | 26 March 2020, 21:40:23 UTC |
| 07a0204 | rvernica | 26 March 2020, 15:39:49 UTC | Undo change on Ubuntu reposiotry and use 14.06 | 26 March 2020, 15:39:49 UTC |
| 9e332d9 | rvernica | 26 March 2020, 15:32:21 UTC | Skip checking and stopping Shim, use 16.04 repo Shim not available in the `19.11` image so don't check that Shim started and don't stop Shim for now. This should be reverted when Shim becomes available in the image. Also use the Ubuntu 16.04 repository. | 26 March 2020, 15:32:21 UTC |
| a170e1f | rvernica | 26 March 2020, 15:27:23 UTC | Merge pull request #109 from dgosselin-p4/sdb-6807 Guarantee Query Side-Effects Complete | 26 March 2020, 15:27:23 UTC |
| cb38748 | Dave Gosselin | 26 March 2020, 13:55:26 UTC | Revert "Point travis at SciDB 19.11-centos-7" This reverts commit f40c06cf4fabed128134156eda0d44d10b30705c. | 26 March 2020, 13:55:49 UTC |
| bd91f5b | Jason Kinchen | 24 March 2020, 20:39:04 UTC | Ubuntu changes to support v5 compiler. | 24 March 2020, 20:39:04 UTC |
| f40c06c | dgosselin | 24 March 2020, 17:14:27 UTC | Point travis at SciDB 19.11-centos-7 | 24 March 2020, 17:14:27 UTC |
| 94d3eb6 | Dave Gosselin | 24 March 2020, 14:53:10 UTC | Point travis at SciDB 19.11 | 24 March 2020, 14:53:28 UTC |
| 71f0e04 | Dave Gosselin | 22 February 2020, 16:02:50 UTC | Before this change, and in the case that the client ignores the query result (either by supplying '-n' with iquery or not pulling the result array here in the shim) then any side-effects of query execution are not guaranteed to occur. For example, a query like 'apply(arr, x, func(v))' that is executed but not pulled by the client will not guarantee that function 'func' is applied to every v in arr. This change, and the corresponding change in SciDB, is a temporary workaround until CCM roll-out occurs, whereby a consume() is injected at the root of the query when the client indicates that they will not pull the query result. In that case, consume() acts to pull the result array on every instance, therby ensuring side-effects occur just as they would had the client pulled the result array. Fixes read.sh test script to accomodate list() output format change. | 22 February 2020, 16:03:03 UTC |
| 22ed205 | martin-resnick | 06 November 2019, 02:24:32 UTC | New shim. Everything is done with the executable. | 06 November 2019, 02:24:32 UTC |
| 5799fa9 | rvernica | 03 October 2019, 02:13:35 UTC | Merge pull request #98 from dgosselin-p4/fd-leak Proactively disconnect on session init failure | 03 October 2019, 02:13:35 UTC |
| f1a5582 | Dave Gosselin | 02 October 2019, 19:40:10 UTC | Proactively disconnect on session init failure | 02 October 2019, 19:59:03 UTC |
| 10bd67f | rvernica | 26 September 2019, 21:15:19 UTC | Merge pull request #97 from Paradigm4/v18.1 V18.1 | 26 September 2019, 21:15:19 UTC |
| 19f53af | rvernica | 26 September 2019, 04:53:08 UTC | Merge pull request #96 from Paradigm4/mlr_18.1 Add systemd support | 26 September 2019, 04:53:08 UTC |
| 845cdfc | Martin L Resnick | 26 September 2019, 02:49:03 UTC | ignore error from "systemctl stop shim" | 26 September 2019, 02:49:03 UTC |
| c2938ef | Martin L Resnick | 26 September 2019, 02:39:13 UTC | Remove @ so we can see systemV and systemd commands | 26 September 2019, 02:39:13 UTC |
| 8933242 | Martin L Resnick | 26 September 2019, 02:11:21 UTC | Update documentation to include systemd | 26 September 2019, 02:11:21 UTC |
| 3364069 | Martin L Resnick | 26 September 2019, 00:11:18 UTC | Added systemd support with a script "shim_systemd" | 26 September 2019, 00:11:18 UTC |
| 617be10 | Martin L Resnick | 26 September 2019, 00:08:15 UTC | Rid of extra white space | 26 September 2019, 00:08:15 UTC |
| ec9a30d | Martin L Resnick | 25 September 2019, 01:10:01 UTC | Final | 25 September 2019, 01:10:01 UTC |
| c43ab8b | Martin L Resnick | 23 September 2019, 18:54:15 UTC | SystemD unit for auto restart shim | 23 September 2019, 18:54:15 UTC |
| d2c3a4d | Rares Vernica | 03 June 2019, 01:28:02 UTC | Suppress log output | 03 June 2019, 01:28:02 UTC |
| 669f01b | Rares Vernica | 03 June 2019, 01:00:37 UTC | Use variable for SciDB version for Arrow package location | 03 June 2019, 01:00:37 UTC |
| 21cefcb | Rares Vernica | 02 June 2019, 03:37:36 UTC | Add SciDB 19.3 and Travis badges | 02 June 2019, 03:37:36 UTC |
| d8e57ee | rvernica | 02 June 2019, 03:34:44 UTC | Merge pull request #95 from Paradigm4/v19.3 V19.3 | 02 June 2019, 03:34:44 UTC |
| 24b4205 | Rares Vernica | 02 June 2019, 03:17:47 UTC | Install accelerated_io_tools manually | 02 June 2019, 03:17:47 UTC |
| 014e51a | Rares Vernica | 02 June 2019, 02:50:31 UTC | Update SciDB restart commands | 02 June 2019, 02:50:31 UTC |
| 01192af | Rares Vernica | 02 June 2019, 02:50:15 UTC | More fixes in tests to account for distribution in list() | 02 June 2019, 02:50:15 UTC |
| 1a53170 | Rares Vernica | 02 June 2019, 01:51:01 UTC | Fix tests to account for distribution in schema | 02 June 2019, 01:51:01 UTC |
| ac69c0d | Rares Vernica | 02 June 2019, 01:50:36 UTC | Skip making directories | 02 June 2019, 01:50:36 UTC |
| 3e71135 | Rares Vernica | 02 June 2019, 00:53:06 UTC | Install libpcre | 02 June 2019, 00:53:06 UTC |
| 6ce1780 | Rares Vernica | 02 June 2019, 00:45:42 UTC | Install gcc | 02 June 2019, 00:45:42 UTC |
| dd55a01 | Rares Vernica | 02 June 2019, 00:32:50 UTC | Install superfunpack manually | 02 June 2019, 00:32:50 UTC |
| d9c19cd | Rares Vernica | 02 June 2019, 00:16:22 UTC | Fix another 19.3-ext use | 02 June 2019, 00:16:22 UTC |
| e387e5c | Rares Vernica | 02 June 2019, 00:02:29 UTC | Don't use 19.3-ext image as it is not available yet | 02 June 2019, 00:02:29 UTC |
