| 36f0494 | mvdbeek | 22 August 2022, 21:14:31 UTC | Update version to 22.05.1 | 22 August 2022, 21:14:31 UTC |
| 88a986c | mvdbeek | 22 August 2022, 21:14:27 UTC | Update version to 22.05.1.dev0 | 22 August 2022, 21:14:27 UTC |
| b5b63da | mvdbeek | 22 August 2022, 19:59:39 UTC | Merge branch 'release_22.01' into release_22.05 | 22 August 2022, 19:59:39 UTC |
| 0a69d3d | mvdbeek | 22 August 2022, 19:57:17 UTC | Update version to 22.1.2.dev0 | 22 August 2022, 19:57:17 UTC |
| dc56fc4 | mvdbeek | 22 August 2022, 19:46:16 UTC | Update version to 22.01.1 | 22 August 2022, 19:47:47 UTC |
| 4258b4e | Marius van den Beek | 22 August 2022, 19:06:54 UTC | Merge pull request #14492 from mvdbeek/missing_image [22.05] Add missing image to user facing release notes | 22 August 2022, 19:06:54 UTC |
| a8ff8c6 | mvdbeek | 22 August 2022, 19:03:02 UTC | Add missing image | 22 August 2022, 19:05:59 UTC |
| c5a2d38 | Marius van den Beek | 22 August 2022, 16:42:24 UTC | Merge pull request #14211 from mvdbeek/22.05_release_notes [22.05] 22.05 release notes | 22 August 2022, 16:42:24 UTC |
| aa57723 | mvdbeek | 22 August 2022, 15:47:37 UTC | Drop placeholders | 22 August 2022, 15:47:37 UTC |
| 3d24ef2 | mvdbeek | 22 August 2022, 15:37:48 UTC | Add last PR | 22 August 2022, 15:37:48 UTC |
| b5ae0ac | Marius van den Beek | 22 August 2022, 15:02:39 UTC | Apply Magda's typo and spelling fixes | 22 August 2022, 15:02:39 UTC |
| 0d40797 | Marius van den Beek | 22 August 2022, 14:34:03 UTC | Add Alembic to admin announcement Co-authored-by: John Davis <jdavcs@gmail.com> | 22 August 2022, 14:34:03 UTC |
| 0ac10db | Marius van den Beek | 21 August 2022, 12:52:48 UTC | Merge pull request #14488 from nsoranzo/release_22.05_fix_docs [22.05] Doc fixes | 21 August 2022, 12:52:48 UTC |
| 4fcbe80 | Nicola Soranzo | 19 August 2022, 17:33:20 UTC | Doc fixes | 19 August 2022, 17:33:20 UTC |
| 9532624 | Nicola Soranzo | 19 August 2022, 16:37:27 UTC | Update application documentation with: ``` make -C doc/ updaterst ``` | 19 August 2022, 16:37:27 UTC |
| 2f34e40 | mvdbeek | 19 August 2022, 15:11:57 UTC | Drop overly verbose changes | 19 August 2022, 15:11:57 UTC |
| b5a75ca | Nicola Soranzo | 19 August 2022, 14:28:58 UTC | Merge branch 'release_22.01' into release_22.05 | 19 August 2022, 14:28:58 UTC |
| 2c12d3a | mvdbeek | 19 August 2022, 14:25:38 UTC | Add newer PRs | 19 August 2022, 14:25:38 UTC |
| 18a9a39 | mvdbeek | 19 August 2022, 14:11:41 UTC | Write admin announce, add deferred datasets to user announcement | 19 August 2022, 14:11:41 UTC |
| cccdb49 | Marius van den Beek | 19 August 2022, 11:23:32 UTC | Merge pull request #14482 from davelopez/22.05_fix_query_parameter_lists [22.05] Fix Jobs API index to accept query parameters as lists | 19 August 2022, 11:23:32 UTC |
| c9a8e4f | mvdbeek | 19 August 2022, 10:52:11 UTC | Update PRs | 19 August 2022, 10:52:11 UTC |
| d1c66d6 | Dannon | 19 August 2022, 10:32:49 UTC | Merge pull request #14473 from mvdbeek/change_datatype_problems [22.05] Fix effective datatype in workflow editor node terminals | 19 August 2022, 10:32:49 UTC |
| 1545b9d | davelopez | 19 August 2022, 10:30:53 UTC | Simplify `query_parameter_as_list` And render the repeated parameter input in the docs. The first parameter can be a comma-separated list of values | 19 August 2022, 10:30:53 UTC |
| 4dbb26f | Marius van den Beek | 18 August 2022, 14:46:59 UTC | Update announce user notes Co-authored-by: M Bernt <m.bernt@ufz.de> Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> | 19 August 2022, 10:29:25 UTC |
| 3fddd4d | John Davis | 11 July 2022, 13:14:25 UTC | Add release testing team | 19 August 2022, 10:29:25 UTC |
| 6261d6a | Helena Rasche | 11 July 2022, 13:13:00 UTC | add user facing release notes | 19 August 2022, 10:29:25 UTC |
| 857c598 | mvdbeek | 28 June 2022, 14:08:03 UTC | Update a couple PR titles, strip trailing `.` from PR titles | 19 August 2022, 10:29:25 UTC |
| ccfe010 | mvdbeek | 28 June 2022, 11:54:53 UTC | Draft release notes | 19 August 2022, 10:29:24 UTC |
| 65c724e | Marius van den Beek | 19 August 2022, 09:43:38 UTC | Merge pull request #14475 from jancrichter/patch-1 [22.05] Grep1 tool: fix keep_header option | 19 August 2022, 09:43:38 UTC |
| 7e24d45 | Marius van den Beek | 19 August 2022, 09:41:23 UTC | Merge pull request #14483 from bernt-matthias/topic/elem-none [22.05] Fix xml deprecation warning in ``parse_requirements_from_xml`` | 19 August 2022, 09:41:23 UTC |
| b1e7b89 | Matthias Bernt | 19 August 2022, 07:58:33 UTC | fix deprection warning which pops up at every `planemo lint`: ``` galaxy/tool_util/deps/requirements.py:348: FutureWarning: The behavior of this method will change in future versions. Use specific 'len(elem)' or 'elem is not None' test instead. ``` | 19 August 2022, 08:29:06 UTC |
| 1d59487 | davelopez | 19 August 2022, 06:59:02 UTC | Add unit tests for `query_parameter_as_list` | 19 August 2022, 06:59:02 UTC |
| 30dc1bf | Marius van den Beek | 18 August 2022, 17:21:23 UTC | Merge pull request #14440 from qiagu/dynamic_options [22.01] Revert startswith of tool parameter options | 18 August 2022, 17:21:23 UTC |
| 05ed926 | davelopez | 18 August 2022, 16:39:34 UTC | Fix Jobs API index endpoint Use the `query_parameter_as_list` dependency to support multiple ways of providing lists of values while rendering the API docs as a single string query parameter. | 18 August 2022, 16:39:34 UTC |
| 1a10327 | davelopez | 18 August 2022, 16:37:10 UTC | Add `query_parameter_as_list` dependable Supports declaring query parameters as 'listified' | 18 August 2022, 16:37:10 UTC |
| 446b07b | mvdbeek | 18 August 2022, 15:48:38 UTC | Adjust workflow safe tool version update range for Grep1 | 18 August 2022, 15:50:21 UTC |
| 912dc47 | jancrichter | 18 August 2022, 11:30:21 UTC | bump version | 18 August 2022, 15:49:06 UTC |
| f9f7e97 | jancrichter | 18 August 2022, 10:59:56 UTC | adjust tests to correctly test for retainment of header | 18 August 2022, 15:49:05 UTC |
| 7b10be9 | jancrichter | 18 August 2022, 10:50:02 UTC | Append grep results to avoid overwriting header Currently, if "keep_header" is true, the header is copied to the output file, but is then overwritten by the grep results. | 18 August 2022, 15:49:04 UTC |
| 01a4915 | Marius van den Beek | 18 August 2022, 15:35:51 UTC | Merge pull request #14476 from bernt-matthias/topic/linter-fixes [22.05] Tool linter bug fixes | 18 August 2022, 15:35:51 UTC |
| e511595 | Marius van den Beek | 18 August 2022, 15:20:08 UTC | Merge pull request #14480 from bernt-matthias/topic/scool-datatype [22.05] Add scool datatype | 18 August 2022, 15:20:08 UTC |
| 2bd8044 | M Bernt | 18 August 2022, 15:18:36 UTC | Remove comment Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com> | 18 August 2022, 15:18:36 UTC |
| d7006d2 | Matthias Bernt | 18 August 2022, 14:50:47 UTC | add scool datatype used in IUC schicexplorer | 18 August 2022, 14:50:47 UTC |
| da72674 | Marius van den Beek | 18 August 2022, 14:47:50 UTC | Merge pull request #14479 from mvdbeek/fix_error_message [22.05] Update error message when building ucsc_build_sites.txt fails | 18 August 2022, 14:47:50 UTC |
| f2fbfe4 | mvdbeek | 18 August 2022, 14:33:43 UTC | Update error message when building ucsc_build_sites.txt fails Fixes https://github.com/galaxyproject/galaxy/issues/14478 | 18 August 2022, 14:33:47 UTC |
| df81e55 | Matthias Bernt | 18 August 2022, 12:33:08 UTC | explicitly test for None found one tool where argument was "" due to macro usage | 18 August 2022, 12:35:11 UTC |
| d8036a8 | Matthias Bernt | 18 August 2022, 12:32:52 UTC | f-string fix | 18 August 2022, 12:35:11 UTC |
| b41bc6d | Matthias Bernt | 18 August 2022, 12:32:22 UTC | allow no_options validator for data and data_collection | 18 August 2022, 12:35:11 UTC |
| 1ede9e8 | Matthias Bernt | 18 August 2022, 12:31:57 UTC | xsd: allow 0 for bytes | 18 August 2022, 12:35:11 UTC |
| 5f0fbb0 | Matthias Bernt | 18 August 2022, 12:30:14 UTC | fix docs | 18 August 2022, 12:30:14 UTC |
| 8ef9ef4 | Matthias Bernt | 18 August 2022, 12:28:55 UTC | fix test | 18 August 2022, 12:28:55 UTC |
| ea85cab | qiagu | 12 August 2022, 07:34:36 UTC | Revert startswith of tool parameter options | 18 August 2022, 09:04:12 UTC |
| 685ac29 | mvdbeek | 17 August 2022, 18:47:38 UTC | Fix qunit tests | 18 August 2022, 08:18:46 UTC |
| 7195a16 | mvdbeek | 17 August 2022, 16:34:22 UTC | Pass correct canvasManager into Connector Should fix https://github.com/galaxyproject/galaxy/issues/14468 | 18 August 2022, 08:18:46 UTC |
| d86b355 | mvdbeek | 17 August 2022, 13:13:29 UTC | Replace jQuery usage in connector.js | 18 August 2022, 08:18:46 UTC |
| 18e4c00 | mvdbeek | 17 August 2022, 13:06:45 UTC | Remove force_datatype getter One place less that is calling out into the Node vue component | 18 August 2022, 08:18:46 UTC |
| e35b82a | mvdbeek | 17 August 2022, 07:44:06 UTC | Selenium test for changing datatype In subworkflows and outside. All asserts terminal label. | 18 August 2022, 08:18:10 UTC |
| 1ec5909 | Nate Coraor | 17 August 2022, 20:35:13 UTC | Merge pull request #14471 from natefoo/gravity-0.13.3 [22.05] Bump Gravity version to 0.13.3 | 17 August 2022, 20:35:13 UTC |
| 9915a6e | Nicola Soranzo | 17 August 2022, 19:06:43 UTC | Merge pull request #14456 from mvdbeek/drop_tzinfo_when_parsing_datetime [22.05] Fix data_range_{min,max} parsing | 17 August 2022, 19:06:43 UTC |
| 69ca03e | Nate Coraor | 17 August 2022, 17:48:39 UTC | Bump Gravity version to 0.13.3 | 17 August 2022, 17:48:39 UTC |
| cd94ccb | Marius van den Beek | 17 August 2022, 17:24:07 UTC | Merge pull request #14457 from natefoo/log-rotation [22.05] Add log rotation options and update logging documentation | 17 August 2022, 17:24:07 UTC |
| 973d077 | Marius van den Beek | 17 August 2022, 16:43:57 UTC | Include timezone testing Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> | 17 August 2022, 16:43:57 UTC |
| 7d2f8dc | Dannon | 17 August 2022, 10:34:51 UTC | Merge pull request #14470 from mvdbeek/singularity_fix_cleanenv [22.05] Fix position of cleanenv flag in singularity command | 17 August 2022, 10:34:51 UTC |
| 1b1d015 | Marius van den Beek | 17 August 2022, 07:55:04 UTC | Merge pull request #14467 from natefoo/disable-translogger [22.05] Disable translogger middleware by default | 17 August 2022, 07:55:04 UTC |
| 6eb0347 | mvdbeek | 17 August 2022, 07:46:36 UTC | Fix position of cleanenv flag in singularity command Fixes https://github.com/galaxyproject/galaxy/issues/14408#issuecomment-1216742827 | 17 August 2022, 07:53:08 UTC |
| 961472c | Nicola Soranzo | 16 August 2022, 22:25:42 UTC | Merge branch 'release_22.01' into release_22.05 | 16 August 2022, 22:25:42 UTC |
| 6db3224 | Dannon | 16 August 2022, 20:26:41 UTC | Merge pull request #14466 from nsoranzo/release_22.01_fix_docs [22.01] Fix doc versioning banner and other doc fixes | 16 August 2022, 20:26:41 UTC |
| d1b3734 | Nate Coraor | 16 August 2022, 16:36:06 UTC | Disable translogger middleware by default, use gunicorn.access (actually uvicorn.access) for transaction logging. | 16 August 2022, 16:37:45 UTC |
| 11c0c7b | Nicola Soranzo | 16 August 2022, 14:29:12 UTC | Fix doc versioning banner Currently doc builds for `release_22.01` and `master` branches incorrectly show the "This document is for an in-development version of Galaxy." warning banner. Partially backport commit 318a1d7056cc8a5b9f6b83ef1cd186d6ef8939d4 and drop the unused `TARGET_BRANCH` variable from `Makefile` which shadows the shell environment variable of the same name set in `.github/workflows/docs.yaml` and used in `doc/source/conf.versioning.py` . | 16 August 2022, 14:33:26 UTC |
| b0727be | mvdbeek | 16 August 2022, 11:06:50 UTC | Fix change_datatype not reflected in tool and workflow output terminals | 16 August 2022, 13:46:11 UTC |
| b0d9cff | mvdbeek | 16 August 2022, 11:11:54 UTC | Add unit test That was meant to go into the first commit ... | 16 August 2022, 11:12:28 UTC |
| cd76fef | Marius van den Beek | 16 August 2022, 11:11:21 UTC | Convert to UTC instead of stripping timezone Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> | 16 August 2022, 11:11:21 UTC |
| 3522fd3 | Nate Coraor | 15 August 2022, 17:20:10 UTC | Add log rotation options and update logging documentation | 16 August 2022, 00:54:02 UTC |
| e91a659 | Enis Afgan | 15 August 2022, 19:20:03 UTC | Merge pull request #14449 from nuwang/docker_k8s_ansible_fixes Docker k8s ansible fixes | 15 August 2022, 19:20:03 UTC |
| 69defb7 | Nicola Soranzo | 14 August 2022, 17:33:42 UTC | Doc fixes | 15 August 2022, 18:15:02 UTC |
| 9da11c6 | Nuwan Goonasekera | 15 August 2022, 16:14:56 UTC | Change repository to docker hub OSS repo | 15 August 2022, 16:14:56 UTC |
| 414156a | mvdbeek | 15 August 2022, 15:55:24 UTC | Fix data_range_{min,max} parsing All datetime values established via our sqlalchemy models don't include `tzinfo`. Fixes https://github.com/galaxyproject/galaxy/issues/14094#issuecomment-1215166187. In general this is a bad thing, we should definitely be honoring timezone info, but the rest of the app just assumes UTC, so this will work. | 15 August 2022, 15:59:25 UTC |
| 71ec603 | Marius van den Beek | 15 August 2022, 13:33:07 UTC | Merge pull request #14452 from mvdbeek/22_05_routes_with_trailing_slashes [22.05] Register trailing slashes in API routes | 15 August 2022, 13:33:07 UTC |
| 5c993ac | mvdbeek | 15 August 2022, 10:35:39 UTC | Use non-aliased group user url in tests | 15 August 2022, 10:35:39 UTC |
| cd6ce8d | mvdbeek | 12 August 2022, 11:08:02 UTC | Register trailing slashes in API routes | 15 August 2022, 09:51:51 UTC |
| 01fddf9 | Nuwan Goonasekera | 14 August 2022, 12:40:17 UTC | Tweaks to support latest ansible playbook | 14 August 2022, 20:18:51 UTC |
| 6a3804b | Nicola Soranzo | 14 August 2022, 16:55:51 UTC | Update application documentation with: ``` make -C doc/ updaterst ``` | 14 August 2022, 17:39:19 UTC |
| 6fff1e0 | Nuwan Goonasekera | 14 August 2022, 12:39:36 UTC | Fix a minor typo | 14 August 2022, 12:39:36 UTC |
| eb700ce | Nuwan Goonasekera | 14 August 2022, 12:34:07 UTC | Revert "Tweaks to support latest ansible playbook" This reverts commit 175932918c1d4e87c766fec11d108e726ef93409. | 14 August 2022, 12:34:07 UTC |
| c602933 | Nuwan Goonasekera | 14 August 2022, 12:34:02 UTC | Revert "Fix minor typo" This reverts commit b41ccccda1e424e3aa339089c636d19921f552ce. | 14 August 2022, 12:34:02 UTC |
| 1759329 | Nuwan Goonasekera | 14 August 2022, 07:26:23 UTC | Tweaks to support latest ansible playbook | 14 August 2022, 07:26:23 UTC |
| b41cccc | Nuwan Goonasekera | 14 August 2022, 07:26:01 UTC | Fix minor typo | 14 August 2022, 07:26:01 UTC |
| 3e5522e | Marius van den Beek | 12 August 2022, 15:29:05 UTC | Merge pull request #14444 from mvdbeek/invocation_list_fix [22.05] Fix console errors when stored workflow id hasn't been fetched yet | 12 August 2022, 15:29:05 UTC |
| 1a14633 | mvdbeek | 14 June 2022, 12:17:39 UTC | Fix console errors when stored workflow id hasn't been fetched yet | 12 August 2022, 14:01:53 UTC |
| df3d5a1 | Marius van den Beek | 12 August 2022, 13:58:05 UTC | Merge pull request #14429 from mvdbeek/singularity_no_host_env_vars [22.05] Pass ``--cleanenv`` by default to singularity command | 12 August 2022, 13:58:05 UTC |
| 9c0fcad | Dannon | 12 August 2022, 13:52:34 UTC | Merge pull request #14417 from mvdbeek/crc32_for_specific_file_sizes [22.05] Calculate CRC32 for files in size between 1444 and 1459 bytes | 12 August 2022, 13:52:34 UTC |
| a902745 | Marius van den Beek | 12 August 2022, 11:42:13 UTC | Merge pull request #14426 from davelopez/22.05_make_contains_filter_case_insensitive [22.05] Make history contents filter with `contains` case insensitive | 12 August 2022, 11:42:13 UTC |
| bb19e41 | Marius van den Beek | 12 August 2022, 09:31:14 UTC | Merge pull request #14277 from astrovsky01/agp_sniff [22.05] Make Agp set_meta more lenient | 12 August 2022, 09:31:14 UTC |
| 9dd74fc | Marius van den Beek | 12 August 2022, 09:21:49 UTC | Merge pull request #14431 from mvdbeek/cached_image_path_identifier_fix [22.05] Fix cache image singularity resolver if path contains uppercase chars | 12 August 2022, 09:21:49 UTC |
| 034ea59 | mvdbeek | 11 August 2022, 17:27:58 UTC | Use func.lower and autoescape for contains filters | 11 August 2022, 17:38:27 UTC |
| b4a8c06 | Marius van den Beek | 11 August 2022, 15:21:34 UTC | Use os.sep.join Much nicer! Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com> | 11 August 2022, 15:21:34 UTC |
| 403dcdd | Marius van den Beek | 11 August 2022, 14:55:26 UTC | Merge pull request #13453 from bernt-matthias/topic/slurm-self-cancel [22.05] SLURM: check first if stopped for cancelled jobs | 11 August 2022, 14:55:26 UTC |
| 0560e43 | mvdbeek | 11 August 2022, 10:40:15 UTC | Fix cache image singularity resolver if path contains uppercase chars Fixes https://github.com/galaxyproject/galaxy/issues/14425 | 11 August 2022, 11:32:21 UTC |
| 27efc1d | mvdbeek | 11 August 2022, 10:22:46 UTC | Change test file to test relaxed valid_lines function | 11 August 2022, 10:22:46 UTC |
| d0c1751 | Alexander OSTROVSKY | 07 July 2022, 22:35:16 UTC | Log warning if agp file has ``na`` linkage evidence Salsa2 and YAHS may produce such files. | 11 August 2022, 10:09:43 UTC |
