| 15a7ef8 | Thomas Wiecki | 27 May 2019, 07:46:10 UTC | Upgrade to 3.7 | 27 May 2019, 07:46:10 UTC |
| 8317281 | Austin Rochford | 24 May 2019, 14:19:44 UTC | Merge pull request #3488 from Bruschkov/docker-build-fix remove previous instance of docker container in start_container script | 24 May 2019, 14:19:44 UTC |
| cb5e04e | Bruschkov | 24 May 2019, 14:04:26 UTC | fixed requested changes: remove stopped container #3488 | 24 May 2019, 14:04:26 UTC |
| 0fbde7d | Bruschkov | 24 May 2019, 10:00:05 UTC | fixed requested changes: Check if container is running before shutting down to avoid error message #3488 | 24 May 2019, 13:55:54 UTC |
| 7bd413d | jbrusch | 22 May 2019, 14:39:17 UTC | remove previous instance of docker container in start_container script | 24 May 2019, 13:55:54 UTC |
| 988f522 | Sid Ravinutala | 23 May 2019, 19:54:04 UTC | Fix for #3483: `model_to_graphviz` now works with shared variables (#3490) * fix for 3483 + modified test_model_grah.py to test it * fixed model_graph.py to handle shardvars * adding import for theano | 23 May 2019, 19:54:04 UTC |
| 6a6da63 | Thomas Wiecki | 23 May 2019, 09:15:33 UTC | Add links to issues in release-notes, add contributors. | 23 May 2019, 09:15:33 UTC |
| 64f0b2c | Thomas Wiecki | 22 May 2019, 19:14:20 UTC | More fixes to release notes. | 22 May 2019, 19:14:20 UTC |
| 3e47cd7 | Thomas Wiecki | 22 May 2019, 16:01:27 UTC | Remove erroneous line in release-notes. | 22 May 2019, 16:01:27 UTC |
| 9a3018a | Thomas Wiecki | 22 May 2019, 15:49:54 UTC | Upgrade to 3.7.rc1. | 22 May 2019, 15:49:54 UTC |
| 78ce11c | Luciano Paz | 21 May 2019, 19:26:09 UTC | Merge pull request #3468 from rpgoldman/ppc-params Proposed revision to sample_posterior_predictive() | 21 May 2019, 19:26:09 UTC |
| 48b3862 | Robert P. Goldman | 08 May 2019, 18:12:04 UTC | Revise sample_prior/posterior_predictive() parameters. Add the option to take varnames (`var_names`), rather than var objects as parameters. Extend the set of parameters to accept varnames as an alternative to vars, preserving backwards compatibility. Also revise the docstring, to clarify the return type and add type comments. | 21 May 2019, 18:21:31 UTC |
| f9916ea | Robert P. Goldman | 12 May 2019, 22:33:20 UTC | Add type hint to modelcontext. | 21 May 2019, 18:19:07 UTC |
| 8bb85df | Robert P. Goldman | 21 May 2019, 18:18:23 UTC | Delete unused variable. | 21 May 2019, 18:18:23 UTC |
| 8597aef | Luciano Paz | 21 May 2019, 13:52:19 UTC | Merge pull request #3485 from ColCarroll/rm-numdifftools Remove numdifftools | 21 May 2019, 13:52:19 UTC |
| 079bbce | Colin Carroll | 21 May 2019, 12:20:35 UTC | Fix lint, add release notes | 21 May 2019, 12:20:35 UTC |
| 940d784 | Luciano Paz | 21 May 2019, 09:46:30 UTC | Added minimal python3.5 test env (#3470) * Added minimal python3.5 test env * Enforced python3.5 with matrix. Used different conda env in py35. * Reverted travis.yml matrix back to envs. Set default ENVNAME * Removed duplicate env * Try to pip uninstall conflicting numpy version before conda installing into the env * Confirm pip uninstall numpy * Try to uninstall numpy in install_miniconda * Try to not conda install numpy and hope pip does everything well * Fixed test error on py35 env * Fixed defects introduced to draw_values * Commented why we uninstall miniconda's numpy * Added python_requires to setup.py | 21 May 2019, 09:46:30 UTC |
| 33fef97 | Colin Carroll | 21 May 2019, 02:07:19 UTC | Remove numdifftools | 21 May 2019, 02:07:19 UTC |
| ff7f047 | Tim Blazina | 16 May 2019, 11:08:10 UTC | Improve distribution docs - continued (#3479) * add doc strings for logp methods for time series distributions * Add docstring for transformed distribution logp method * Add docstring for random method for multivariate distributions * Add docstrings to logp method for multivariate distributions * change docstring paramter to match actual parameter name defined in function definition * Add docstrings to logp and random methods for bound distributions * Fix mismatched function parameters and docstring variable names * add docstring to logp_nojac method for transformed distribution * Add docstrings to all logcdf methods for continuous distributions * Fix accidently deletion of variable * Fix repeated typo | 16 May 2019, 11:08:10 UTC |
| 2545d60 | michaelosthege | 12 May 2019, 09:03:32 UTC | Merge pull request #3472 from Dpananos/pr_fix Fix for #3450 | 12 May 2019, 09:03:32 UTC |
| e9b9a44 | Demetri | 11 May 2019, 19:27:19 UTC | Test for chol factorization should pass now | 11 May 2019, 19:27:19 UTC |
| c5214af | Demetri | 11 May 2019, 14:57:56 UTC | Add test for MvNormal cholesky factorization | 11 May 2019, 14:57:56 UTC |
| c487b34 | Bas Nijholt | 10 May 2019, 22:41:52 UTC | fix examples url in the README.rst (#3476) The url that it currently links to is dead | 10 May 2019, 22:41:52 UTC |
| 014f51e | Ravin Kumar | 10 May 2019, 03:42:30 UTC | Merge pull request #3474 from tblazina/improve-distributions-docstrings [WIP] Improve doc strings for distributions | 10 May 2019, 03:42:30 UTC |
| 7a3cf27 | Tim Blazina | 09 May 2019, 14:08:54 UTC | Remove duplicated docstring | 09 May 2019, 14:08:54 UTC |
| e79c852 | Tim Blazina | 09 May 2019, 13:47:39 UTC | add doc strings for logp methods in discrete distribution classes | 09 May 2019, 13:47:39 UTC |
| 4817bc5 | Tim Blazina | 09 May 2019, 11:14:30 UTC | Add doc strings for random and logp class methods for mixture distribution | 09 May 2019, 11:14:30 UTC |
| e2a97ea | Tim Blazina | 09 May 2019, 10:54:07 UTC | Add doc strings to all random methods for discrete distribution classes | 09 May 2019, 10:54:07 UTC |
| 88a4306 | Demetri | 09 May 2019, 00:01:08 UTC | commits fix for issue 3450. _repr_cov_params now uses self.chol_cov | 09 May 2019, 00:01:08 UTC |
| 6f2d82f | Luciano Paz | 08 May 2019, 04:45:36 UTC | Merge pull request #3471 from rpgoldman/new-ignores Ignore mypy cache directory. | 08 May 2019, 04:45:36 UTC |
| 89ec0cc | Robert P. Goldman | 07 May 2019, 14:39:00 UTC | Ignore mypy cache directory. | 07 May 2019, 14:39:00 UTC |
| 8a177f2 | Colin | 07 May 2019, 07:59:01 UTC | Fix HamiltonianMC init to forward arguments (#3469) * Fix HamiltonianMC init to forward arguments * Update first 100 steps of HMC * Comments | 07 May 2019, 07:59:01 UTC |
| 55ccacf | Ravin Kumar | 07 May 2019, 05:28:25 UTC | Merge pull request #3397 from canyon289/rerun_notebooks Rerun notebooks | 07 May 2019, 05:28:25 UTC |
| ab128aa | Chris Fonnesbeck | 06 May 2019, 19:09:19 UTC | Merge pull request #3396 from chartl/factor_analysis_notebook Add a notebook for Bayesian Factor Analysis | 06 May 2019, 19:09:19 UTC |
| 306155a | Luciano Paz | 06 May 2019, 12:56:30 UTC | Merge pull request #3466 from lucianopaz/iss3465 Remove variable annotations | 06 May 2019, 12:56:30 UTC |
| e080cae | lucianopaz | 06 May 2019, 11:53:16 UTC | Added to release-notes. Moved model_graph issue to bottom of maintenance. | 06 May 2019, 11:53:16 UTC |
| e923bcf | lucianopaz | 06 May 2019, 11:50:48 UTC | Removed dangling PowerSet | 06 May 2019, 11:50:48 UTC |
| c52d741 | lucianopaz | 06 May 2019, 11:50:23 UTC | Removed type annotations | 06 May 2019, 11:50:23 UTC |
| bcf5637 | Luciano Paz | 06 May 2019, 08:11:22 UTC | Added shape_utils doc (#3463) * Added shape_utils to docs * Added shape_utils to api | 06 May 2019, 08:11:22 UTC |
| 05e3c39 | Luciano Paz | 05 May 2019, 19:04:41 UTC | Merge pull request #3460 from rpgoldman/grapher-dfs Fix for timeout in graph_model | 05 May 2019, 19:04:41 UTC |
| ca13c44 | Robert P. Goldman | 05 May 2019, 16:54:59 UTC | Release note for PR #3460 | 05 May 2019, 16:54:59 UTC |
| 9f3bba0 | Robert P. Goldman | 05 May 2019, 15:56:06 UTC | Remove unused _ancestors method New Breadth-first search version of _get_ancestors no longer uses it. Also added some type annotations to clarify. | 05 May 2019, 16:54:25 UTC |
| 8981c7e | Robert P. Goldman | 04 May 2019, 14:05:45 UTC | Simplify _get_ancestors(). Per @lucianopaz. remove the initial special case/ | 05 May 2019, 15:57:10 UTC |
| f76df8c | Robert P. Goldman | 03 May 2019, 21:49:27 UTC | Revise _get_ancestors to use BFS. Previously, `get_ancestors()` used a powerset computation, which would fail on large models. Replaced with breadth-first search. | 05 May 2019, 15:57:10 UTC |
| d113e41 | Thomas Wiecki | 04 May 2019, 18:51:54 UTC | Revert "Fixes to DP mixture notebook (#3459)" (#3462) This reverts commit 3dfe70091d49db61b5c667032d4b0ae6ee9bcc6b. | 04 May 2019, 18:51:54 UTC |
| e2ea26b | rpgoldman | 04 May 2019, 14:43:12 UTC | Add MultiTrace to docs. (#3461) | 04 May 2019, 14:43:12 UTC |
| 3dfe700 | Chris Fonnesbeck | 03 May 2019, 15:51:06 UTC | Fixes to DP mixture notebook (#3459) | 03 May 2019, 15:51:06 UTC |
| b253803 | Thomas Wiecki | 03 May 2019, 14:48:37 UTC | Update Euler-Maruyama. | 03 May 2019, 14:50:15 UTC |
| f5d8324 | Luciano Paz | 02 May 2019, 14:04:06 UTC | Improve shape handling in generate_samples (#3456) * Added shape_utils script * Import from shape_utils and change generate samples * Fixed lint and errors * Still errors with broadcast shapes * Fixed triangular errors * Fixed distrubutions random errors. * Fixed Multinomial error * Fixed multinomial n shape error * Added shape broadcasting tests * Added broadcast samples tests * Made all tests use fixtures. Finished shape broadcasting tests. * Fixed shape_utils docstrings. * Added random variable sampling to test_shape testsuite. * Removed redundant broadcast_distribution_samples from random methods. This is now handled in generate_samples. * Fixed lint * Moved test_shape_handling to last travis environment * Changed test skip to xfail * Fixed Bound random error * Changes to increase code coverage * Moved to_tuple to shape_utils * Used numpy vectorize to fix 3422 * Fixed signature for empty input and one_d reshaping. * Removed unused fixture and added more details to RELEASE-NOTES * Addressed colcarrol comments | 02 May 2019, 14:04:06 UTC |
| 3cdde2a | lucianopaz | 01 May 2019, 09:58:22 UTC | Fix for lda-advi-aevb | 01 May 2019, 09:58:22 UTC |
| 3673291 | lucianopaz | 01 May 2019, 09:58:04 UTC | Fix for gaussian_process | 01 May 2019, 09:58:04 UTC |
| 096b235 | lucianopaz | 01 May 2019, 09:57:52 UTC | Fix for dp_mix | 01 May 2019, 09:57:52 UTC |
| b411452 | lucianopaz | 01 May 2019, 09:57:40 UTC | Fix for GP-smoothing | 01 May 2019, 09:57:40 UTC |
| 7d2fa50 | lucianopaz | 01 May 2019, 09:57:26 UTC | Fix for GP-TProcess | 01 May 2019, 09:57:26 UTC |
| df6262b | lucianopaz | 01 May 2019, 09:57:11 UTC | Fix for GP-SparseApprox | 01 May 2019, 09:57:11 UTC |
| fd47636 | lucianopaz | 01 May 2019, 09:56:54 UTC | Fix for GP-MeansAndCovs | 01 May 2019, 09:56:54 UTC |
| 8f6eb68 | lucianopaz | 01 May 2019, 08:53:39 UTC | Fixed dp_mix | 01 May 2019, 08:53:39 UTC |
| fc66cb2 | lucianopaz | 01 May 2019, 08:38:23 UTC | Reran GP-Tprocess | 01 May 2019, 08:38:23 UTC |
| b71c93a | lucianopaz | 30 April 2019, 19:07:08 UTC | Reran lda-advi | 30 April 2019, 19:07:08 UTC |
| c7444dc | lucianopaz | 30 April 2019, 16:36:53 UTC | Reran GP-smoothing | 30 April 2019, 16:36:53 UTC |
| 5362f50 | lucianopaz | 30 April 2019, 16:34:06 UTC | Reran dp_mix | 30 April 2019, 16:34:06 UTC |
| add16c4 | lucianopaz | 30 April 2019, 16:33:28 UTC | Removing slice sampling. This step method was move to pymc-experiments | 30 April 2019, 16:33:28 UTC |
| de4b033 | lucianopaz | 30 April 2019, 16:29:34 UTC | Merge branch 'rerun_notebooks' of https://github.com/canyon289/pymc3 into rerun_notebooks | 30 April 2019, 16:29:34 UTC |
| 82de3bd | lucianopaz | 30 April 2019, 16:29:31 UTC | Reran GP-MeansAndCovs | 30 April 2019, 16:29:31 UTC |
| 2a6feea | lucianopaz | 30 April 2019, 15:46:27 UTC | Reran gaussian_process | 30 April 2019, 15:46:27 UTC |
| a7f62a0 | David Brochart | 25 April 2019, 16:35:14 UTC | Fix image in doc (#3455) | 25 April 2019, 16:35:14 UTC |
| ceba6f7 | chartl | 23 April 2019, 21:34:31 UTC | Address comments and update to python3 | 23 April 2019, 21:34:31 UTC |
| 35813f7 | David Brochart | 23 April 2019, 11:20:26 UTC | Fix image link (not showing up on the web) (#3454) | 23 April 2019, 11:20:26 UTC |
| 6148d1b | Chris Fonnesbeck | 18 April 2019, 13:41:56 UTC | Fix for shape issue in prior sampling for bounded distributions (#3451) * Fix for shape issue in prior sampling for bounded distributions * Fixed unrelated test failure in test_normal_scalar * Fixed test_normal_scalar failure | 18 April 2019, 13:41:56 UTC |
| a3622d3 | Thomas Wiecki | 16 April 2019, 19:46:54 UTC | Update more NBs. Remove Dawid-Skene. | 16 April 2019, 19:51:43 UTC |
| 9493102 | Junpeng Lao | 06 April 2019, 15:25:49 UTC | rerun marginalized_gaussian_mixture_model | 16 April 2019, 19:51:43 UTC |
| d80227f | Junpeng Lao | 06 April 2019, 15:24:51 UTC | rerun model_averaging.ipynb | 16 April 2019, 19:51:43 UTC |
| 6f866e2 | Junpeng Lao | 06 April 2019, 15:20:15 UTC | rerun model_comparison.ipynb | 16 April 2019, 19:51:43 UTC |
| 9f20612 | Junpeng Lao | 06 April 2019, 15:19:47 UTC | rerun MvGaussianRandomWalk_demo.ipynb | 16 April 2019, 19:51:43 UTC |
| 84915dd | Junpeng Lao | 06 April 2019, 15:15:25 UTC | rerun survival_analysis.ipynb | 16 April 2019, 19:51:43 UTC |
| fa60f9d | Junpeng Lao | 06 April 2019, 15:13:34 UTC | Rerun normalizing_flows_overview.ipynb | 16 April 2019, 19:51:42 UTC |
| ecbd946 | Junpeng Lao | 06 April 2019, 14:59:04 UTC | rerun posterior_predictive.ipynb | 16 April 2019, 19:51:42 UTC |
| 104e964 | Junpeng Lao | 06 April 2019, 14:50:26 UTC | rerun SMC2_gaussians.ipynb | 16 April 2019, 19:51:42 UTC |
| 983f2b4 | Junpeng Lao | 06 April 2019, 14:39:20 UTC | rerun Update_priors.ipynb | 16 April 2019, 19:51:42 UTC |
| 8114993 | Ravin Kumar | 09 March 2019, 16:07:29 UTC | Rerun Bayesian Neural Networks | 16 April 2019, 19:51:42 UTC |
| eb1636b | Junpeng Lao | 26 March 2019, 22:30:29 UTC | update Diagnosing_biased_Inference_with_Divergences | 16 April 2019, 19:51:42 UTC |
| 4dd480f | Ravin Kumar | 09 March 2019, 16:07:29 UTC | Rerun Bayesian Neural Networks | 16 April 2019, 19:51:42 UTC |
| 436eba7 | Junpeng Lao | 26 March 2019, 21:38:32 UTC | update sampling_compound_step | 16 April 2019, 19:51:42 UTC |
| 54e6421 | Thomas Wiecki | 19 March 2019, 15:06:01 UTC | rerun variational api quickstart | 16 April 2019, 19:51:42 UTC |
| ef56967 | Thomas Wiecki | 19 March 2019, 13:57:24 UTC | Rerun and update stoch vol. | 16 April 2019, 19:51:42 UTC |
| 4e664ce | Thomas Wiecki | 19 March 2019, 13:04:42 UTC | Rerun sampler stats. | 16 April 2019, 19:51:42 UTC |
| da6fc02 | Thomas Wiecki | 19 March 2019, 12:50:52 UTC | Rerun weibull aft. | 16 April 2019, 19:51:42 UTC |
| 4fcf146 | Thomas Wiecki | 19 March 2019, 12:43:08 UTC | Run marginalized GMM. | 16 April 2019, 19:51:42 UTC |
| 7ff4e24 | Thomas Wiecki | 19 March 2019, 12:42:58 UTC | Run LDA ADVI AEVB. | 16 April 2019, 19:51:42 UTC |
| 6637c62 | Thomas Wiecki | 19 March 2019, 12:42:44 UTC | Update getting started. | 16 April 2019, 19:51:42 UTC |
| cc74cc0 | Thomas Wiecki | 19 March 2019, 12:42:25 UTC | Reword and rerurn empirical approx NB, but still pretty rough. | 16 April 2019, 19:51:42 UTC |
| c52bed9 | Thomas Wiecki | 19 March 2019, 12:41:46 UTC | Run cox model. | 16 April 2019, 19:51:41 UTC |
| 421fce0 | Thomas Wiecki | 19 March 2019, 12:41:33 UTC | Run LKJ | 16 April 2019, 19:51:41 UTC |
| 60d4383 | Junpeng Lao | 11 March 2019, 05:15:07 UTC | rerun lasso block update | 16 April 2019, 19:51:41 UTC |
| d1b9057 | Junpeng Lao | 11 March 2019, 05:06:00 UTC | update glm-logistic | 16 April 2019, 19:51:41 UTC |
| 6ec7ba1 | Junpeng Lao | 10 March 2019, 21:51:46 UTC | rerun + fix (most) GLM related docs | 16 April 2019, 19:51:41 UTC |
| 4933d71 | Junpeng Lao | 09 March 2019, 19:10:57 UTC | rerun pymc3_tips_and_heuristic | 16 April 2019, 19:51:41 UTC |
| 50a8e2b | Colin Carroll | 09 March 2019, 18:34:30 UTC | Rerun gp-maunaloa | 16 April 2019, 19:51:40 UTC |
| 4a90891 | Colin Carroll | 09 March 2019, 18:30:24 UTC | Rerun gp-latent | 16 April 2019, 19:51:40 UTC |
| 1ba1a98 | Ravin Kumar | 09 March 2019, 16:26:02 UTC | Rerun censored data | 16 April 2019, 19:51:40 UTC |
