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120fc4e Improve example on expanded sample_posterior_predictive Sample posterior_predictive relies on other groups to infer volatility, so it's important to keep the whole InferenceData. Also there's a shape error if `sample_dims` is not specified 27 March 2024, 21:30:46 UTC
81d31c8 List more math function in API docs (#7211) Also removes deprecated functions and deprecates numpy helpers Co-authored-by: Ricardo Vieira <ricardo.vieira1994@gmail.com> 27 March 2024, 09:30:57 UTC
89f6fcf [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.3.3 → v0.3.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.3...v0.3.4) 25 March 2024, 19:19:23 UTC
4c3ec36 Add var_names argument to sample (#7206) Co-authored-by: Ricardo Vieira <28983449+ricardoV94@users.noreply.github.com> 25 March 2024, 18:46:27 UTC
cdfa8c0 add _moment function for bacward backward compatibility (#7216) 25 March 2024, 18:37:41 UTC
abe7bc9 fixing check_parameters occurences in icdf functions, replacing with check_icdf_parameters 25 March 2024, 09:55:44 UTC
f302882 Add icdf functions for Beta, Gamma, Chisquared and Students distributions removing unnecessary parameterization test on studentT test removing unnecessary test on chisquared test 25 March 2024, 09:55:44 UTC
3841c7b Remove unused comp_shape from NormalMixture 25 March 2024, 09:37:49 UTC
a033261 Codecov reintroduce after_n_builds 22 March 2024, 15:55:14 UTC
61ce412 Remove filter for solved warning 22 March 2024, 11:13:36 UTC
20e4722 Ignore DeprecationWarning triggered by arviz 22 March 2024, 11:13:36 UTC
b4412d1 Test on Python 3.12 22 March 2024, 11:13:36 UTC
89b1985 Bump PyTensor dependency 22 March 2024, 11:13:36 UTC
4c0d838 Specify python_version for mypy 22 March 2024, 10:23:09 UTC
06acd99 [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.3.2 → v0.3.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.3.2...v0.3.3) 22 March 2024, 10:23:09 UTC
b983e33 Bump docker/setup-buildx-action from 3.1.0 to 3.2.0 Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.1.0 to 3.2.0. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](https://github.com/docker/setup-buildx-action/compare/v3.1.0...v3.2.0) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> 22 March 2024, 10:15:16 UTC
cb51389 Bump docker/login-action from 3.0.0 to 3.1.0 Bumps [docker/login-action](https://github.com/docker/login-action) from 3.0.0 to 3.1.0. - [Release notes](https://github.com/docker/login-action/releases) - [Commits](https://github.com/docker/login-action/compare/343f7c4344506bcbf9b4de18042ae17996df046d...e92390c5fb421da1463c202d546fed0ec5c39f20) --- updated-dependencies: - dependency-name: docker/login-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> 22 March 2024, 10:13:13 UTC
201a5b2 Bump docker/build-push-action from 5.2.0 to 5.3.0 Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5.2.0 to 5.3.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/af5a7ed5ba88268d5278f7203fb52cd833f66d6e...2cdde995de11925a030ce8070c3d77a52ffcf1c0) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> 22 March 2024, 10:02:12 UTC
6b850a5 Bump actions/checkout from 4.1.1 to 4.1.2 Bumps [actions/checkout](https://github.com/actions/checkout) from 4.1.1 to 4.1.2. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/b4ffde65f46336ab88eb53be808477a3936bae11...9bb56186c3b09b4f86b1c65136769dd318469633) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> 22 March 2024, 10:01:25 UTC
aa679f3 Add `print_name` to Truncated and CustomDists 21 March 2024, 14:01:44 UTC
30d00fe Fix expression for the variance in ZINB docstring 18 March 2024, 14:31:33 UTC
a06081e Improve docs 13 March 2024, 09:33:17 UTC
509b6b5 Bump docker/build-push-action from 5.0.0 to 5.2.0 Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5.0.0 to 5.2.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](https://github.com/docker/build-push-action/compare/0565240e2d4ab88bba5387d719585280857ece09...af5a7ed5ba88268d5278f7203fb52cd833f66d6e) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> 13 March 2024, 09:30:40 UTC
5d4f469 [pre-commit.ci] pre-commit autoupdate (#7191) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.2 → v0.3.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.2...v0.3.2) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> 13 March 2024, 09:29:41 UTC
244fb97 Refactor `get_tau_sigma` and support lists of variables (#7185) 04 March 2024, 23:16:32 UTC
47f6d9e Fix syntax of some documentation code blocks 04 March 2024, 10:27:38 UTC
f8e24fc Explain how to make the graph from to_graphviz 04 March 2024, 10:27:38 UTC
109dd50 Bump codecov/codecov-action from 3 to 4 Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](https://github.com/codecov/codecov-action/compare/v3...v4) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> 04 March 2024, 10:25:42 UTC
d95acc0 Updated docstrings in pymc.model.core.Model (#7118) 04 March 2024, 10:24:17 UTC
cb412cb Bump docker/setup-buildx-action from 3.0.0 to 3.1.0 Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.0.0 to 3.1.0. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](https://github.com/docker/setup-buildx-action/compare/v3.0.0...v3.1.0) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> 04 March 2024, 04:17:04 UTC
46f1675 Add danger warning about buggy behavior of Deterministics in `sample_posterior_predictive` 01 March 2024, 18:21:36 UTC
547e2e0 Add examples for advanced uses of `sample_posterior_predictive` 01 March 2024, 18:21:36 UTC
35ccca5 Fix error in `dataset_to_point_list` when chain, draw are not the leading dims (#7180) 01 March 2024, 14:05:36 UTC
9bf2190 Fix error in warn_treedepth when using multiple NUTS sampler 01 March 2024, 09:50:01 UTC
6c6fd13 Remove sample_posterior_predictive_w, previously deprecated 29 February 2024, 18:57:49 UTC
6252d2e Add gufunc_signature to SymbolicRandomVariables 29 February 2024, 09:06:02 UTC
2f85e66 Remove deprecated Bound distribution 28 February 2024, 11:16:31 UTC
a2988c7 Refactor duplicated jax sampler code and emit convergence warnings by default 28 February 2024, 08:55:33 UTC
bcbb066 Always run divergence and treedepth checks in `run_convergence_checks` 28 February 2024, 08:55:33 UTC
ecbcf38 Rename moment to finite_logp_point (#7166) 28 February 2024, 08:17:21 UTC
d6535e8 Reduce chance to fail for `test_replace_vars_in_graphs_nested_reference` test case (#7174) Co-authored-by: Ricardo Vieira <28983449+ricardoV94@users.noreply.github.com> 28 February 2024, 08:10:58 UTC
879dc0e Fix typo in developer_guide.md (#7170) 27 February 2024, 09:51:48 UTC
2e3ea56 add sitemap to docs 26 February 2024, 18:05:45 UTC
74748c7 Fix `compute_log_prior` in models with `Deterministics` (#7168) 22 February 2024, 17:15:57 UTC
97a7a00 Reduce number of minimum draw in warning message 20 February 2024, 11:24:01 UTC
7b38a48 [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.1 → v0.2.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.1...v0.2.2) 20 February 2024, 09:15:24 UTC
0541065 update BAP to third edition 17 February 2024, 16:03:11 UTC
c3e0d86 Add option to save model graph to an image (#7158) 17 February 2024, 06:33:11 UTC
3a304d6 Remove intX and floatX from distributions (#7114) 17 February 2024, 06:30:33 UTC
0d8ddba Fix copying of shared variables in `fgraph_from_model` (#7153) * Do not use deprecated ScalarSharedVariable * Recreate SharedVariables with exact type in fgraph_from_model 13 February 2024, 18:47:17 UTC
ff99e3b add Google Scholar link for newest article 13 February 2024, 14:18:02 UTC
ae5a943 add log_prior to arviz converter 13 February 2024, 12:24:03 UTC
1eef3d2 update name workflow 13 February 2024, 12:24:03 UTC
726d18b unify 13 February 2024, 12:24:03 UTC
d6297ba add compute_log_prior 13 February 2024, 12:24:03 UTC
6657169 Remove extra line 13 February 2024, 09:14:41 UTC
a9b9e31 Specify automatic labels in dependabot.yml 13 February 2024, 05:18:50 UTC
353af18 [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.0 → v0.2.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.2.0...v0.2.1) 13 February 2024, 05:10:20 UTC
dcf1a25 Bump pre-commit/action from 3.0.0 to 3.0.1 Bumps [pre-commit/action](https://github.com/pre-commit/action) from 3.0.0 to 3.0.1. - [Release notes](https://github.com/pre-commit/action/releases) - [Commits](https://github.com/pre-commit/action/compare/v3.0.0...v3.0.1) --- updated-dependencies: - dependency-name: pre-commit/action dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> 13 February 2024, 05:08:43 UTC
627a8dd Deprecate `block_diag` from math module in favor of PyTensor (#7132) 08 February 2024, 14:11:21 UTC
8745974 Fix failing VI test due to pytest change (#7144) 08 February 2024, 09:28:54 UTC
3693198 Disable pre-commit-ci autofix on PRs 06 February 2024, 17:07:38 UTC
4991b6a Fix HSGP docstrings examples 06 February 2024, 14:18:23 UTC
a8e892b GP do not fail when xdims cannot be constant folded 06 February 2024, 14:18:23 UTC
c8a503c Remove workflow to autoupdate pre-commit hook versions This functionality is replaced by pre-commit-ci. 06 February 2024, 11:00:20 UTC
f49b923 Bump dorny/paths-filter from 2 to 3 Bumps [dorny/paths-filter](https://github.com/dorny/paths-filter) from 2 to 3. - [Release notes](https://github.com/dorny/paths-filter/releases) - [Changelog](https://github.com/dorny/paths-filter/blob/master/CHANGELOG.md) - [Commits](https://github.com/dorny/paths-filter/compare/v2...v3) --- updated-dependencies: - dependency-name: dorny/paths-filter dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> 06 February 2024, 10:39:32 UTC
9b2778f Bump docker/metadata-action from 5.5.0 to 5.5.1 Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.5.0 to 5.5.1. - [Release notes](https://github.com/docker/metadata-action/releases) - [Commits](https://github.com/docker/metadata-action/compare/dbef88086f6cef02e264edb7dbf63250c17cef6c...8e5442c4ef9f78752691e2d8f8d19755c6f78e81) --- updated-dependencies: - dependency-name: docker/metadata-action dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> 06 February 2024, 10:10:06 UTC
02e45b4 Bump peter-evans/slash-command-dispatch from 3 to 4 Bumps [peter-evans/slash-command-dispatch](https://github.com/peter-evans/slash-command-dispatch) from 3 to 4. - [Release notes](https://github.com/peter-evans/slash-command-dispatch/releases) - [Commits](https://github.com/peter-evans/slash-command-dispatch/compare/v3...v4) --- updated-dependencies: - dependency-name: peter-evans/slash-command-dispatch dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> 06 February 2024, 10:09:05 UTC
972f3c4 Rectify return type hints in logprob module rewrites Co-authored-by: Vivek Anand Singh <17vivekanandsingh@gmail.com> 06 February 2024, 10:08:44 UTC
ad500d0 Upgrade to ruff 0.2.0 and fix RUF017 * one missing line return * --show-source -> --output-format=full * --line-length removed from .pre-commit because it is in pyproject * ruff.extend-per-file-ignores -> ruff.lint.extend-per-file-ignores * fixed three instances of quadratic list summations 06 February 2024, 08:51:20 UTC
6554683 Add logprob for discrete minimum of IID variables Co-authored-by: Dhruvanshu-Joshi <104030847+dhruvanshu-joshi@users.noreply.github.com> 05 February 2024, 10:46:44 UTC
dfc4788 Support discrete negation and addition 05 February 2024, 10:46:44 UTC
94020c9 Move 'Implementing a Random Variable' to last position in 'How To' section 29 January 2024, 17:45:18 UTC
f8b19a5 Fix RUF005 27 January 2024, 15:06:10 UTC
4140361 Fix RUF013 27 January 2024, 15:06:10 UTC
ba56b81 Fix RUF015 27 January 2024, 15:06:10 UTC
07a14f2 Remove useless str in fstring 27 January 2024, 15:06:10 UTC
86279f8 Enable RUF lints 27 January 2024, 15:06:10 UTC
2ee5813 Upgrade ruff to Python 3.9 27 January 2024, 15:06:10 UTC
2da4050 Allow jitter boolean to be set through nuts_sampler_kwargs (#7083) 23 January 2024, 14:11:26 UTC
ef1f91f Add a flag to LKJCorr to return the unpacked correlation matrix (#7100) * LKJCorr now has an option of returning n by n matrix instead of just the upper triangular part as vector 23 January 2024, 14:10:43 UTC
08eaeb1 [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.14](https://github.com/astral-sh/ruff-pre-commit/compare/v0.1.11...v0.1.14) 23 January 2024, 03:25:05 UTC
d6951a6 Bump actions/cache from 3 to 4 Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> 22 January 2024, 05:28:17 UTC
e3f008a Fix progress bar for parallel sampling 21 January 2024, 03:09:18 UTC
3a59c16 update links to Welcome bot images 16 January 2024, 09:58:49 UTC
01757e1 Gitpod instructions: use latest version of pymc (#7106) Co-authored-by: Ben Mares <services-git-throwaway1@tensorial.com> 15 January 2024, 16:35:20 UTC
6f8f9ee Extend `dataset_to_point_dict` to accept both dataset and dict of dataarray (#7097) 12 January 2024, 18:45:36 UTC
2051d0b Use ruff linter (#7091) Co-authored-by: Ricardo Vieira <28983449+ricardoV94@users.noreply.github.com> Co-authored-by: Ben Mares <services-git-throwaway1@tensorial.com> 11 January 2024, 14:09:24 UTC
2c355f1 suppressed pip install bambi output in GLM core notebook 08 January 2024, 14:34:50 UTC
4e80b37 Bump docker/metadata-action from 5.3.0 to 5.5.0 Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.3.0 to 5.5.0. - [Release notes](https://github.com/docker/metadata-action/releases) - [Commits](https://github.com/docker/metadata-action/compare/31cebacef4805868f9ce9a0cb03ee36c32df2ac4...dbef88086f6cef02e264edb7dbf63250c17cef6c) --- updated-dependencies: - dependency-name: docker/metadata-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> 08 January 2024, 07:15:15 UTC
7bb2ccd ⬆️ UPGRADE: Autoupdate pre-commit config and update copyright year (#6915) 02 January 2024, 10:43:49 UTC
118be0f Add test for Blockwise logp regression 21 December 2023, 11:15:13 UTC
986738f added normal logcdf func and new test domains 21 December 2023, 11:14:37 UTC
72534c7 Constant fold original RV.shape in graph of joined PartialObservedRV Not doing this would lead to no default updates for draws of such RVs, due to the same RNG being reused twice. 21 December 2023, 11:11:24 UTC
904a0ea Bump docker/metadata-action from 5.0.0 to 5.3.0 Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.0.0 to 5.3.0. - [Release notes](https://github.com/docker/metadata-action/releases) - [Commits](https://github.com/docker/metadata-action/compare/96383f45573cb7f253c731d3b3ab81c87ef81934...31cebacef4805868f9ce9a0cb03ee36c32df2ac4) --- updated-dependencies: - dependency-name: docker/metadata-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> 13 December 2023, 14:01:03 UTC
011b78b Bump actions/setup-python from 4 to 5 Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v4...v5) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> 13 December 2023, 14:00:29 UTC
851c991 Fix default transform for `LKJCorr` (#7065) 13 December 2023, 13:58:47 UTC
35cd657 Allow batched scalar sigma in ZeroSumNormal 13 December 2023, 12:38:25 UTC
0fd7b9e Update PULL_REQUEST_TEMPLATE.md 11 December 2023, 21:31:54 UTC
2e05854 Avoid inplace mutation in replace_rvs_by_values This would happen when transforms reference other variables 10 December 2023, 11:35:08 UTC
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