https://github.com/splatlab/squeakr

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Revision Author Date Message Commit Date
755ceef Adding Squeakr exact. 30 November 2017, 16:57:50 UTC
485b9d5 Merge branch 'master' of github.com:splatlab/squeakr 30 November 2017, 16:41:59 UTC
c27fb52 Merge branch 'development' 30 November 2017, 16:41:05 UTC
f9436cd Merge branch 'development' 30 November 2017, 16:40:43 UTC
0217339 Updating README. 30 November 2017, 16:38:46 UTC
27e9b49 Fixing a minor bug in inner product CLI. 30 November 2017, 16:33:39 UTC
c9dca4b Addig CLI interface to other two commands. 30 November 2017, 16:25:46 UTC
bd6ade1 Merge branch 'development' 18 November 2017, 19:44:19 UTC
110be94 Merge branch 'master' of https://github.com/splatlab/squeakr 18 November 2017, 19:43:39 UTC
3d71cf0 Merge branch 'development' 18 November 2017, 19:43:14 UTC
4ca288b Update README.md 18 November 2017, 19:42:55 UTC
ac4777b Merge branch 'development' 18 November 2017, 19:40:20 UTC
cddfc92 merge 18 November 2017, 19:36:54 UTC
b2e4489 hold 18 November 2017, 19:34:49 UTC
e16bf41 make sure this folder exists 18 November 2017, 19:33:44 UTC
20c699c Work with the new CLI 18 November 2017, 06:18:41 UTC
01aa926 merge 17 November 2017, 03:28:08 UTC
6799ad0 prepare for merge with newest features 17 November 2017, 03:26:51 UTC
c860bbf Adding code to pass a prefix as an argument. 17 November 2017, 02:47:51 UTC
7d813e6 fix merge 17 November 2017, 02:45:29 UTC
277bca0 add named paramaters to squeakr-count 17 November 2017, 02:44:58 UTC
8382a7b Fixing a bug in naming the file. 17 November 2017, 02:28:13 UTC
558a107 Adding code for enabling users to specify the k-mer size as in input parameter. 16 November 2017, 19:28:07 UTC
3e9bfdd Merge branch 'master' of github.com:splatlab/squeakr 16 November 2017, 19:20:28 UTC
74f4455 Merge branch 'development' of github.com:splatlab/squeakr into development 16 November 2017, 19:17:05 UTC
aa47530 Adding scripts for merging. 16 November 2017, 19:16:49 UTC
a78c426 Merge branch 'master' of github.com:splatlab/squeakr 16 November 2017, 19:14:56 UTC
4601cfd Updating README. 16 November 2017, 19:12:11 UTC
63f6d76 Adding code for enabling users to specify the k-mer size as in input parameter. 16 November 2017, 19:10:30 UTC
060ab36 Merge branch 'master' of github.com:splatlab/squeakr 14 November 2017, 18:47:46 UTC
0c2ffe4 Using the same seed for the hash function in every run. 14 November 2017, 18:47:40 UTC
2e7916c Update README.md 09 November 2017, 17:24:36 UTC
818a7bf Update README.md 09 November 2017, 17:22:23 UTC
e858595 Moving a comment from gqf.c to the header file where it belongs. 04 November 2017, 00:19:37 UTC
0b1a790 Removing SSL dependency. 04 November 2017, 00:16:01 UTC
f1e877d Fixing a minor bug when you write a CQF to using qf_serialize and read it back using qf_read. 31 October 2017, 00:26:50 UTC
2e1af52 Removed call to fallocate to preallocate space of the file on disk. 19 September 2017, 01:54:14 UTC
59c6f27 Minor README tweaks. 18 September 2017, 16:16:27 UTC
55ee912 Updating Makefile to append flags to CXX and LD instead of overwriting them. 18 September 2017, 04:21:31 UTC
e7de0a2 changes to makefile 18 September 2017, 02:48:25 UTC
d7c2b5c Adding help option and updating executable names. 18 September 2017, 00:07:54 UTC
83e47ce Fixing a bug in the thread-safe CQF code. Also, updating the README with instructions about the query API. 08 September 2017, 20:57:21 UTC
ed9b52e Merge branch 'master' of github.com:splatlab/squeakr 08 September 2017, 20:56:43 UTC
5853609 Fixing a bug in the thread-safe CQF code. Also, updating the README with instructions about the query API. 08 September 2017, 20:56:21 UTC
6604ddf Update README.md 08 May 2017, 21:39:48 UTC
8760147 Changing the gzFile type to make it compatible for MAC OS 10.11 compatible. 02 May 2017, 13:33:16 UTC
f15a067 Update README.md 02 May 2017, 13:07:52 UTC
4c60869 Adding library dependencies in the README. Also, added a note that Squeakr currently only supports fastq file formats. 02 May 2017, 13:07:05 UTC
849dbe1 Fixing a small assertion bug in the CQF. 12 April 2017, 02:09:49 UTC
7950058 Update README.md 04 April 2017, 22:32:43 UTC
da534d3 Added an alternate implementation of select on machine words to work on non-Haswell hardware. Also, updated the Makefile and removed libs folder. 04 April 2017, 22:29:40 UTC
6aa21e1 Merge branch 'master' of github.com:splatlab/squeakr 04 March 2017, 01:20:37 UTC
641ec99 Adding missing libraries. 04 March 2017, 01:20:25 UTC
27c0e7a Update README.md 05 February 2017, 01:22:23 UTC
e1eeae6 Update README.md 05 February 2017, 01:14:02 UTC
0278994 Update README.md 05 February 2017, 00:22:35 UTC
2f20be8 Update README.md 05 February 2017, 00:07:38 UTC
3374258 Adding a sample query benchmark. 05 February 2017, 00:06:30 UTC
013a66e Update README.md 04 February 2017, 23:46:14 UTC
8940c94 Adding code for Squeakr. 04 February 2017, 23:21:09 UTC
4a94369 Initial commit 04 February 2017, 22:09:14 UTC
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