https://github.com/GPflow/GPflow

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Revision Author Date Message Commit Date
457ddf8 Support Optional values for check_shapes. (#1797) 08 March 2022, 13:31:32 UTC
18253ba Make posterior predict more memory efficient (#1809) * Use einsum rather than diag_part on a product * Format * Handle leading dimensions Co-authored-by: Uri Granta <uri.granta@secondmind.io> 08 March 2022, 12:48:15 UTC
9332bd1 Add a hook to let the user register shapes for custom types. (#1798) 08 March 2022, 11:18:18 UTC
4a33529 Support anonymous dimensions in check_shapes. (#1796) 08 March 2022, 10:26:22 UTC
2f9afd1 Test builds with both minimum and maximum supported versions. (#1807) 08 March 2022, 08:59:28 UTC
0783cf4 Trigger the doc build corresponding to the current branch. (#1808) 07 March 2022, 16:47:10 UTC
94b4328 Upgrade minimally supported versions to Python 3.7 and TensorFlow 2.4. (#1803) 07 March 2022, 09:46:39 UTC
b272b67 Remove gpflow.utilities.utilities. (#1804) 04 March 2022, 13:39:37 UTC
7ef68be Fix problems discovered by numpy with type hints. (#1802) 04 March 2022, 12:08:09 UTC
a4ebca0 Make BO integration tests faster - they're currently our slowest tests. (#1805) 04 March 2022, 11:45:40 UTC
cdf3c93 Fixed formatting of matrices in SGPR notebook (#1806) 04 March 2022, 11:25:01 UTC
4bdd8a5 Improved confusing scoping of method (#1800) The `_init_variational_parameters` method was using the instance attribute (`self.q_diag`) as well as input argument `q_diag` which refer to the same thing and should never diverge. In fact, `self.diag` is never used anywhere else so does not have to be an attribute. 04 March 2022, 10:28:47 UTC
bc68675 Add type hints to models. (#1799) 03 March 2022, 11:27:11 UTC
2ca04f2 Add type hints to utilities. (#1795) 01 March 2022, 16:37:07 UTC
f3d90e8 Prepare for release 2.4.0. (#1793) 01 March 2022, 11:27:25 UTC
0c06b33 Add back a len(inducing_points) to break our users less. (#1792) 01 March 2022, 10:09:02 UTC
cce19d8 Lift the requirement that batch dimensions must be leading. (#1788) 28 February 2022, 13:29:34 UTC
0c36943 Add type hints to conditionals, monitoring, and optimizers. (#1789) 28 February 2022, 10:56:13 UTC
ec65e54 Make sure posteriors work for Bayesian Optimisation. (#1767) 28 February 2022, 09:59:11 UTC
c7a2be7 Make the VGP support variable-shaped data. (#1774) 24 February 2022, 16:07:16 UTC
42bbfa6 Add type hints to conditionals. (#1787) 24 February 2022, 15:11:53 UTC
65a355f Include the .lark files when installing GPflow. (#1785) 24 February 2022, 11:05:21 UTC
ef8cc40 Add type hints to kernels. (#1783) 23 February 2022, 10:46:12 UTC
b10ac8b Use domain-specific language for specifying tensor shapes. (#1782) 22 February 2022, 14:18:43 UTC
a464b22 Add type hints to expectations, likelihoods, and posterior tests. (#1780) 15 February 2022, 14:30:39 UTC
c49d701 Add more type hints. (#1777) 14 February 2022, 09:56:41 UTC
5f30be1 Add type hints to the config tests. (#1775) 10 February 2022, 09:33:16 UTC
f07b133 Add mypy annotations to some of the tests. (#1773) 09 February 2022, 14:01:11 UTC
ace1f8f Add mypy annotations to covariances and expectations. (#1771) 07 February 2022, 10:11:38 UTC
f52cedb Add posterior object for VGP model. (#1761) 04 February 2022, 12:52:35 UTC
626cdee Refactor check_shapes into multiple files. (#1768) 04 February 2022, 08:57:41 UTC
927eda1 Add types to the configuration, and remove unused imports. (#1769) 03 February 2022, 15:50:50 UTC
b52f9e7 Make mypy a bit more strict, and fix revealed problems. (#1766) 31 January 2022, 10:50:34 UTC
f70e04d Clean up posterior caching code. (#1763) 27 January 2022, 16:51:57 UTC
6fb65a0 Add initial code for shape checking. (#1760) 26 January 2022, 14:46:22 UTC
665a5c9 Install everything in one pip command, to better handle dependency version resolution. (#1764) 26 January 2022, 11:58:07 UTC
32b9ded Make dataclasses dependency conditional at install time (#1759) * Make dataclasses dependency conditional at install time Ensures dataclasses is not treated as a dependency of the "any" wheel on Python 3.7+ Co-authored-by: Jesper Nielsen <44195043+jesnie@users.noreply.github.com> 24 January 2022, 11:40:37 UTC
435dfcb Rapela simplify calc psi in elbo and predict_f (#1755) * Fixed typo in SGPR equation * Removed uncessary sigmas in BayesianGPLVM Co-authored-by: st-- <st--@users.noreply.github.com> Co-authored-by: Jesper Nielsen <44195043+jesnie@users.noreply.github.com> 24 January 2022, 10:51:40 UTC
6f7c111 Bump ipython from 7.18.1 to 7.31.1 in /doc (#1762) Bumps [ipython](https://github.com/ipython/ipython) from 7.18.1 to 7.31.1. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/7.18.1...7.31.1) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 24 January 2022, 10:03:37 UTC
501b8c2 Bump version to 2.3.1 (#1756) 20 January 2022, 10:58:20 UTC
1a2c9d2 Andrewl/fix gpr posterior leading dim (#1747) * add leading dimension use case to test_gpr_posterior.py * address leading dimension issues in GPRPosterior * change release notes * make test use more leading dims * handle more leading dims * fix test dimensions * Remove 'EllipsisType = type(...)' which was causing mypy issues. 05 January 2022, 11:07:06 UTC
ed28523 Handle unconnected gradients in gpflow.optimizers.Scipy. (#1745) Handle unconnected gradients in gpflow.optimizers.Scipy. 14 December 2021, 11:03:17 UTC
f3570cb Fix #1733 (#1734) 03 December 2021, 16:30:55 UTC
7ec8bb3 Adjust test dependencies. (#1743) 30 November 2021, 12:17:33 UTC
e7c26a4 Fix broken docs generation triggering. (#1744) 30 November 2021, 11:58:11 UTC
927a6b6 Set kernelspec on cplb.pct.py. (#1742) 29 November 2021, 16:32:07 UTC
e126de0 Add test requirements to make dev-install. (#1737) 29 November 2021, 12:18:07 UTC
c692b65 Update CircleCi build to use next-gen Docker images. (#1740) 29 November 2021, 11:19:51 UTC
1892eb1 Fix broken link in README.md. (#1736) Fix broken link in README.md. 29 November 2021, 10:54:51 UTC
ccfa49b Fix broken CircleCi build. (#1738) Fix broken CircleCi build. 29 November 2021, 10:12:39 UTC
d088c2c docs/README.md: explain how to run notebooks locally (#1729) Closes https://github.com/GPflow/GPflow/issues/1674 27 October 2021, 08:05:54 UTC
5442883 attempt to fix #1721 (#1727) 26 October 2021, 09:03:27 UTC
d015286 fix broken link (#1718) 26 October 2021, 09:00:11 UTC
30a689d Merge pull request #1726 from GPflow/st/develop-master-merge-oct2021 Merge master back into develop 26 October 2021, 08:59:21 UTC
c1716a0 Merge branch 'master' into st/develop-master-merge-oct2021 26 October 2021, 08:36:00 UTC
ed6acf5 John/release 2.3.0 (#1716) 21 September 2021, 20:30:14 UTC
5267b72 Andrewl cache sgpr (#1711) * set up posterior class (plus rename old class) * Some refactoring to improve readability and efficiency (mainly of tests). Co-authored-by: Alessandro Vullo <killm9m1@yahoo.it> Co-authored-by: Alessandro Vullo <alessandro.vullo@prowler.io> 21 September 2021, 16:06:53 UTC
99a0ecb Fix tests which fail with TensorFlow 2.6.0 (#1714) 21 September 2021, 13:56:42 UTC
49a8cd8 Conjugate Gradient Lower Bound (#1706) 02 September 2021, 14:27:25 UTC
348c75d Update SGPR_notes.md (fix a mistake in derivations) (#1688) 27 August 2021, 19:58:26 UTC
f008f84 notebook fix from #1706 (#1709) 27 August 2021, 16:33:59 UTC
3e4b9f1 Update RELEASE.md (#1701) Add PR references to release notes 06 July 2021, 08:24:44 UTC
6c9ed3a John/parameters (#1699) 02 July 2021, 14:51:44 UTC
f14c41e Andrewl cache gpr (#1696) 01 July 2021, 14:42:52 UTC
268e315 Small refactor of the posteriors to support other models (#1695) 22 June 2021, 14:59:14 UTC
bebbc2b fixes to remove erroneous deprecation warnings (#1693) * fix import to remove erroneous deprecation warning * also fix deprecation warnings for conditional * update RELEASE.md 18 June 2021, 13:45:40 UTC
4054c53 upgrade to black==20.8b1 (#1694) * upgrade to black==20.8b1 * update black version in CircleCI config as well * update RELEASE.md * add types-pkg_resources tests dependency * install types-pkg_resources in CircleCI too 18 June 2021, 07:15:05 UTC
55690c7 Fix unit test which fails when running with TensorFlow 2.5.0 (#1684) 17 May 2021, 12:39:53 UTC
6aab4fb Bugfix for new Posterior object with PrecomputeCacheType.VARIABLE (#1678) (#1679) Co-authored-by: st-- <st--@users.noreply.github.com> 29 April 2021, 14:32:44 UTC
b93548d Bugfix for new Posterior object with PrecomputeCacheType.VARIABLE (#1678) 29 April 2021, 11:29:44 UTC
a964149 Merge pull request #1677 from GPflow/develop Release 2.2.0 27 April 2021, 17:46:42 UTC
1205617 bump version and update RELEASE.md (#1676) 27 April 2021, 17:13:01 UTC
b4e6298 Posterior object for fast predictions (#1636) GPflow had already been optimised for speed in the training loop. This PR addresses the speed of predictions and resolves (partially) #1599. We achieve this by introducing new Posterior objects that can cache the results of a "precompute" stage (everything that's independent of test points) and thereby significantly speeds up repeated predictions. Co-authored-by: ST John <st--@users.noreply.github.com> Co-authored-by: stefanos <stefanosele@users.no-reply.github.com> Co-authored-by: John Mcleod <43960404+johnamcleod@users.noreply.github.com> 27 April 2021, 16:17:09 UTC
a8ee4ae Update HOWTO_RELEASE.md. (#1670) 22 April 2021, 21:45:22 UTC
1e1de82 Change URL for GPflow logo in README.md to absolute, so that it will render correctly on PyPI (#1669) 15 April 2021, 19:51:46 UTC
b5855ba Merge pull request #1668 from GPflow/develop Release 2.1.5 15 April 2021, 15:59:36 UTC
9f50087 Bump version to 2.1.5 (#1666) * Bump version to 2.1.5 * add release notes section for 2.2.0. 15 April 2021, 15:40:55 UTC
1d96af4 fix gpflow.config module-level docstring (#1664) 13 April 2021, 16:01:09 UTC
bfb60c0 John/iic whiten (#1663) * Add test with whiten * Make format * Update RELEASE.md Co-authored-by: st-- <st--@users.noreply.github.com> 13 April 2021, 14:22:50 UTC
0812cd3 John/fc whiten (#1662) * Add test for white=False * Make format * Update RELEASE.md 13 April 2021, 13:46:10 UTC
ea39cba Add RELEASE.md (#1661) * Add RELEASE.md inspired by TensorFlow and include in PR template * add HOWTO_RELEASE.md 12 April 2021, 15:35:40 UTC
4e6f9ce Clean up utilities subpackage (#1650) Separates gpflow.utilities.utilities into gpflow.utilities.misc and gpflow.utilities.traversal. Though user code ought to access all functions directly through gpflow.utilities, not its submodules, a backwards-compatible redirect is provided. Also moves tests around to improve module structure. 08 April 2021, 12:46:26 UTC
afb7699 bring back full list of all contributors throughout time (#1660) * bring back full list of all contributors throughout time * updated PR template * links to github accounts 06 April 2021, 10:44:42 UTC
21e5317 Proposed fix for the fully_correlated_conditional_repeat issue (#1652) Fixes #1651 06 April 2021, 10:15:35 UTC
5b76536 Fix fallback inducing points with multioutput Kuf. (#1654) Fixes #1653 06 April 2021, 09:31:52 UTC
405eb97 Update README.md (#1603) * reorganization of structure * update maintainers * update project list, including link to signature covariances project * table of contents 19 March 2021, 14:04:42 UTC
629e7b2 fix bug (that masked test failure!) in test_method_equivalence (#1649) * fix bug (that masked test failure!) in test_method_equivalence and improve collection speed * optimize non-whitened SVGP model more strongly to get test_equivalence to pass * remove --use-feature=2020-resolver (will become an error in pip 21.0) 15 March 2021, 17:16:31 UTC
1831a5d Update README and require TensorFlow>=2.2 (#1647) Add explanation of TensorFlow/TFP dependencies (as brought up by https://github.com/GPflow/GPflow/issues/1623) 07 March 2021, 14:05:42 UTC
94fa390 New _add_noise_cov method for GPR model class to make it more easily extensible (#1645) 25 February 2021, 16:12:48 UTC
3ea8731 Compatibility between Monitor API and SciPy optimizer (#1642) Co-authored-by: st-- <st--@users.noreply.github.com> 18 February 2021, 16:29:39 UTC
406d2d0 fix ModelToTensorBoard max_size = -1 (#1619) 03 February 2021, 13:45:29 UTC
797fed1 Mypy build fix (#1637) 03 February 2021, 12:38:37 UTC
bc04306 Quickfix dynamic shapes in quadrature (#1626) 13 January 2021, 16:31:51 UTC
721756a list structured-dgp as downstream project (#1621) Co-authored-by: st-- <st--@users.noreply.github.com> 12 January 2021, 12:31:17 UTC
7688477 Fix tests for TF 2.4/TFP 0.12 (#1625) * fix test_deepcopy * increase test_scipy_jit tolerance to make it pass 12 January 2021, 11:59:48 UTC
ff4bb90 Release 2.1.4 (#1613) * Replace len(inducing_variable) with inducing_variable.num inducing property (#1594). Adds support for inducing variables with dynamically changing shape. Change usage from `len(inducing_variable)` to `inducing_variable.num_inducing` instead. Resolves #1578. * HeteroskedasticTFPConditional should construct tensors at class-construction, not at module-import time (#1598) 01 December 2020, 12:56:56 UTC
60e19f8 bump version to 2.1.4 (#1612) 01 December 2020, 11:59:33 UTC
61fc327 list trieste as downstream project (#1611) * list trieste as downstream project Co-authored-by: Joel Berkeley <joel.berkeley@secondmind.ai> Co-authored-by: st-- <st--@users.noreply.github.com> 26 November 2020, 17:14:04 UTC
282d1cd HeteroskedasticTFPConditional should construct tensors at class-construction, not at module-import time (#1598) 15 October 2020, 17:54:23 UTC
8562503 Replace len(inducing_variable) with inducing_variable.num inducing property (#1594) Adds support for inducing variables with dynamically changing shape. Change usage from `len(inducing_variable)` to `inducing_variable.num_inducing` instead. Resolves #1578. 08 October 2020, 15:04:55 UTC
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