| 9c667ab | Mikhail Kolmogorov | 02 February 2015, 23:21:36 UTC | fixed errors in merge with repeats | 02 February 2015, 23:21:36 UTC |
| 998b4d1 | Mikhail Kolmogorov | 31 January 2015, 05:31:53 UTC | more conservative distance estimation | 31 January 2015, 05:31:53 UTC |
| 5169de9 | Mikhail Kolmogorov | 28 January 2015, 21:51:39 UTC | fixed bug | 28 January 2015, 21:51:39 UTC |
| 659d98f | Mikahil Kolmogorov | 28 January 2015, 09:21:07 UTC | oups | 28 January 2015, 09:21:07 UTC |
| b92053a | Mikahil Kolmogorov | 28 January 2015, 08:43:50 UTC | fixed distance estimation between contigs | 28 January 2015, 08:43:50 UTC |
| c29dde6 | Mikhail Kolmogorov | 28 January 2015, 03:15:24 UTC | correct version of one-ref repeat resolver | 28 January 2015, 03:15:24 UTC |
| b28a25d | Mikahil Kolmogorov | 27 January 2015, 08:30:16 UTC | moving | 27 January 2015, 08:30:16 UTC |
| ca2df27 | Mikhail Kolmogorov | 27 January 2015, 04:09:45 UTC | hangling repetitive contigs | 27 January 2015, 04:09:45 UTC |
| d9a47f8 | Mikhail Kolmogorov | 27 January 2015, 01:16:52 UTC | some changes | 27 January 2015, 01:16:52 UTC |
| 697e4f6 | Mikhail Kolmogorov | 26 January 2015, 21:50:15 UTC | a fix in rr + command line option | 26 January 2015, 21:50:15 UTC |
| d31b3b8 | Mikhail Kolmogorov | 24 January 2015, 05:03:12 UTC | smarter repeats resoliving | 24 January 2015, 05:03:12 UTC |
| 8fc521b | Mikhail Kolmogorov | 19 January 2015, 21:01:47 UTC | little bit more reliable prediction | 19 January 2015, 21:01:47 UTC |
| 7c89e9e | Mikhail Kolmogorov | 19 January 2015, 20:50:24 UTC | --threads argument, rr disabled | 19 January 2015, 20:50:24 UTC |
| 0498a1b | Mikhail Kolmogorov | 17 January 2015, 02:36:08 UTC | probably correct rr | 17 January 2015, 02:36:08 UTC |
| 1dc768d | Mikhail Kolmogorov | 17 January 2015, 01:41:16 UTC | two bugfixes | 17 January 2015, 01:41:16 UTC |
| 1c57a3d | Mikhail Kolmogorov | 16 January 2015, 03:52:51 UTC | rr improved a bit | 16 January 2015, 03:52:51 UTC |
| d21ab39 | Mikhail Kolmogorov | 16 January 2015, 00:58:05 UTC | an initial repeat resolver | 16 January 2015, 00:58:05 UTC |
| ebb76de | Mikhail Kolmogorov | 15 January 2015, 20:42:29 UTC | small bug in merging | 15 January 2015, 20:42:29 UTC |
| ebd560a | Mikhail Kolmogorov | 15 January 2015, 05:07:44 UTC | merging procedure handles repeats | 15 January 2015, 05:07:44 UTC |
| 9461555 | Mikhail Kolmogorov | 15 January 2015, 01:42:43 UTC | more necessary refactoring | 15 January 2015, 01:42:43 UTC |
| 44f0be6 | Mikhail Kolmogorov | 15 January 2015, 00:13:06 UTC | fixed error | 15 January 2015, 00:13:06 UTC |
| 7312b50 | Mikhail Kolmogorov | 15 January 2015, 00:01:54 UTC | preparing to big changes | 15 January 2015, 00:01:54 UTC |
| e508020 | Mikhail Kolmogorov | 12 January 2015, 22:31:37 UTC | a possible fix for fusion prediction | 12 January 2015, 22:31:37 UTC |
| 55f7171 | Mikhail Kolmogorov | 12 January 2015, 22:19:06 UTC | refactoring | 12 January 2015, 22:19:06 UTC |
| 4510624 | Mikhail Kolmogorov | 08 January 2015, 00:13:40 UTC | fix in hal2fasta + conservative chimera again + fix in recipe parsing | 08 January 2015, 00:13:40 UTC |
| ff076b8 | Mikhail Kolmogorov | 07 January 2015, 00:59:01 UTC | Merge branch 'devel' of github.com:fenderglass/Ragout into devel | 07 January 2015, 00:59:01 UTC |
| 793f7cb | Mikhail Kolmogorov | 07 January 2015, 00:58:50 UTC | bugfix | 07 January 2015, 00:58:50 UTC |
| 0a1595e | fenderglass | 06 January 2015, 22:37:50 UTC | minor fix | 06 January 2015, 22:37:50 UTC |
| 20ab4d5 | Mikhail Kolmogorov | 06 January 2015, 20:58:36 UTC | fasta from hal | 06 January 2015, 20:58:36 UTC |
| f786d0a | Mikhail Kolmogorov | 06 January 2015, 05:55:40 UTC | hal backend | 06 January 2015, 05:55:40 UTC |
| 83c65dc | Mikhail Kolmogorov | 29 December 2014, 02:21:02 UTC | more smart prediction | 29 December 2014, 02:21:02 UTC |
| b8d4735 | Mikhail Kolmogorov | 28 December 2014, 08:40:02 UTC | preditcion back on | 28 December 2014, 08:40:02 UTC |
| 02755e9 | Mikhail Kolmogorov | 24 December 2014, 23:22:25 UTC | little bit different chimera handling | 24 December 2014, 23:22:25 UTC |
| 8956979 | Mikhail Kolmogorov | 23 December 2014, 07:22:30 UTC | more precise chimera detection | 23 December 2014, 07:22:30 UTC |
| 7ebb89c | Mikhail Kolmogorov | 23 December 2014, 01:33:42 UTC | bottleneck fixed | 23 December 2014, 01:33:42 UTC |
| 4a9a30e | Mikhail Kolmogorov | 22 December 2014, 21:29:38 UTC | couple of small fixes | 22 December 2014, 21:29:38 UTC |
| ee856b2 | Mikhail Kolmogorov | 22 December 2014, 21:12:46 UTC | chimeras detection, some refactoring | 22 December 2014, 21:12:46 UTC |
| fc2be5e | Mikhail Kolmogorov | 22 December 2014, 01:38:14 UTC | experimental anti-fusion version | 22 December 2014, 01:38:14 UTC |
| 3dc894c | Mikhail Kolmogorov | 18 December 2014, 02:16:09 UTC | joiin_collinear rewritten | 18 December 2014, 02:16:09 UTC |
| 8f9f473 | Mikhail Kolmogorov | 11 December 2014, 23:09:49 UTC | nochain | 11 December 2014, 23:09:49 UTC |
| fded228 | Mikhail Kolmogorov | 09 December 2014, 18:56:10 UTC | rearrangement prediction turned off | 09 December 2014, 18:56:10 UTC |
| 209625f | Mikhail Kolmogorov | 04 December 2014, 01:15:59 UTC | block parameter added | 04 December 2014, 01:15:59 UTC |
| 96c1e1e | Mikhail Kolmogorov | 04 December 2014, 01:11:43 UTC | rest scripts moved to right alignmet format | 04 December 2014, 01:11:43 UTC |
| a329583 | Mikhail Kolmogorov | 04 December 2014, 00:32:46 UTC | comparison script works better, new alignment representation | 04 December 2014, 00:32:46 UTC |
| f0f6978 | Mikhail Kolmogorov | 02 December 2014, 02:56:34 UTC | more refactoring | 02 December 2014, 02:56:34 UTC |
| 5dbbb3f | Mikhail Kolmogorov | 02 December 2014, 02:43:34 UTC | new version of assemblies comparison script + refactoring | 02 December 2014, 02:43:34 UTC |
| 0fc9eb6 | Mikhail Kolmogorov | 01 December 2014, 21:56:05 UTC | Merge branch 'devel' of github.com:fenderglass/Ragout into devel | 01 December 2014, 21:56:05 UTC |
| 3fb655d | Mikhail Kolmogorov | 01 December 2014, 21:55:58 UTC | file mode change | 01 December 2014, 21:55:58 UTC |
| cbe8347 | Mikhail Kolmogorov | 01 December 2014, 17:25:30 UTC | something changed | 01 December 2014, 17:25:30 UTC |
| 7a357f7 | Mikhail Kolmogorov | 30 November 2014, 22:40:16 UTC | a script for comparing two assemblies | 30 November 2014, 22:40:16 UTC |
| 777eb5f | fenderglass | 01 November 2014, 01:04:10 UTC | fixed tilde recognition in config paths, tree parser now accepts float values in exp format | 01 November 2014, 01:04:10 UTC |
| c5d640c | fenderglass | 17 October 2014, 22:22:20 UTC | copyright notice fo scripts | 17 October 2014, 22:22:20 UTC |
| 2a52465 | fenderglass | 30 September 2014, 22:07:28 UTC | added two scripts, help improved | 30 September 2014, 22:07:28 UTC |
| 4ed9f44 | fenderglass | 11 September 2014, 16:49:59 UTC | ambigious fasta characters | 11 September 2014, 16:49:59 UTC |
| d599412 | fenderglass | 11 September 2014, 12:32:00 UTC | verification script supports both links and ord format | 11 September 2014, 12:32:00 UTC |
| 51c9f86 | fenderglass | 25 August 2014, 10:33:31 UTC | capturing output of native modules, logging improved | 25 August 2014, 10:33:31 UTC |
| d919fa0 | fenderglass | 24 August 2014, 18:46:26 UTC | --hist option in overlap module | 24 August 2014, 18:46:26 UTC |
| 9a821fa | fenderglass | 12 August 2014, 15:04:58 UTC | error message fix | 12 August 2014, 15:04:58 UTC |
| 4011904 | fenderglass | 08 August 2014, 06:20:32 UTC | version 1.0 | 08 August 2014, 06:20:32 UTC |
| 5783aa3 | fenderglass | 07 August 2014, 19:31:39 UTC | minor logging improvement | 07 August 2014, 19:31:39 UTC |
| 4c47ee5 | fenderglass | 07 August 2014, 19:06:52 UTC | refine by default, additinal testing for native modules | 07 August 2014, 19:06:52 UTC |
| 8cdb83e | fenderglass | 07 August 2014, 09:29:42 UTC | refinement added to tests | 07 August 2014, 09:29:42 UTC |
| c09edca | fenderglass | 07 August 2014, 09:06:56 UTC | changed rows order in links file, debug output improved | 07 August 2014, 09:06:56 UTC |
| e0a19b4 | fenderglass | 06 August 2014, 18:23:39 UTC | small improvement in refinement | 06 August 2014, 18:23:39 UTC |
| 5cfb484 | fenderglass | 30 July 2014, 18:23:05 UTC | faster cut vertex algorithm, fixed bug with debug | 30 July 2014, 18:23:05 UTC |
| f7a3a1f | fenderglass | 22 July 2014, 17:04:18 UTC | more pretty links, ord removed | 22 July 2014, 17:04:18 UTC |
| 340a0ea | fenderglass | 21 July 2014, 15:32:55 UTC | links output format slightly changed | 21 July 2014, 15:32:55 UTC |
| 2b0ae81 | fenderglass | 21 July 2014, 14:45:33 UTC | Merge branch 'lanna' of github.com:fenderglass/Ragout into devel | 21 July 2014, 14:45:33 UTC |
| 94082c3 | fenderglass | 21 July 2014, 12:53:51 UTC | example typo | 21 July 2014, 12:53:51 UTC |
| b924b79 | Anna Lioznova | 21 July 2014, 12:49:40 UTC | Output links added | 21 July 2014, 12:49:40 UTC |
| 7b354df | fenderglass | 21 July 2014, 12:39:25 UTC | small fix | 21 July 2014, 12:39:25 UTC |
| 6c6048b | fenderglass | 21 July 2014, 12:03:03 UTC | Improved manual | 21 July 2014, 12:03:03 UTC |
| e59caf7 | fenderglass | 21 July 2014, 09:46:41 UTC | Merge branch 'master' into devel | 21 July 2014, 09:46:41 UTC |
| 480a94c | fenderglass | 18 July 2014, 18:59:24 UTC | added colored graph | 18 July 2014, 18:59:24 UTC |
| 5bc5199 | fenderglass | 18 July 2014, 18:35:36 UTC | removing red edges after scoring | 18 July 2014, 18:35:36 UTC |
| d01e7c7 | fenderglass | 17 July 2014, 19:32:40 UTC | another one | 17 July 2014, 19:32:40 UTC |
| f612984 | fenderglass | 17 July 2014, 19:28:00 UTC | small manual fix | 17 July 2014, 19:28:00 UTC |
| 65ade75 | fenderglass | 08 July 2014, 10:52:02 UTC | Merge branch 'master' into devel | 08 July 2014, 10:52:02 UTC |
| 943c9e6 | fenderglass | 08 July 2014, 10:50:54 UTC | fixed example | 08 July 2014, 10:50:54 UTC |
| 1ab7d18 | fenderglass | 05 July 2014, 10:40:47 UTC | Merge branch 'devel' | 05 July 2014, 10:40:47 UTC |
| 0994508 | fenderglass | 22 June 2014, 00:29:06 UTC | makefile fix for mac | 22 June 2014, 00:29:06 UTC |
| 1c81dd6 | fenderglass | 05 July 2014, 10:06:59 UTC | oups | 05 July 2014, 10:06:59 UTC |
| 9da47eb | fenderglass | 05 July 2014, 10:05:09 UTC | download link update, nopostprocess option for sibelia | 05 July 2014, 10:05:09 UTC |
| a9383f3 | fenderglass | 04 July 2014, 13:20:09 UTC | minor fixes | 04 July 2014, 13:20:09 UTC |
| e50e896 | fenderglass | 03 July 2014, 13:39:35 UTC | useful warnings + extra overlap parameter | 03 July 2014, 13:39:35 UTC |
| 10d36fd | fenderglass | 03 July 2014, 09:48:05 UTC | maf2synteny parameters | 03 July 2014, 09:48:05 UTC |
| d05e366 | fenderglass | 02 July 2014, 15:43:41 UTC | added more parameters to config, new format | 02 July 2014, 15:43:41 UTC |
| f7b221e | fenderglass | 02 July 2014, 15:08:32 UTC | minor makefile change | 02 July 2014, 15:08:32 UTC |
| 0453aa0 | fenderglass | 01 July 2014, 13:28:35 UTC | forgot to add Sibelia | 01 July 2014, 13:28:35 UTC |
| 6453081 | fenderglass | 01 July 2014, 13:25:51 UTC | automatic testing | 01 July 2014, 13:25:51 UTC |
| 5f41439 | fenderglass | 29 June 2014, 20:36:07 UTC | build status | 29 June 2014, 20:36:07 UTC |
| 08bc1c1 | fenderglass | 29 June 2014, 20:27:02 UTC | more correct makefile | 29 June 2014, 20:27:02 UTC |
| bbdf484 | fenderglass | 29 June 2014, 20:05:03 UTC | minor makefile fix | 29 June 2014, 20:05:03 UTC |
| 6baf07d | fenderglass | 29 June 2014, 19:58:43 UTC | tabs -> spaces | 29 June 2014, 19:58:43 UTC |
| 41d592f | fenderglass | 29 June 2014, 19:50:25 UTC | travis | 29 June 2014, 19:50:25 UTC |
| d3bc49a | fenderglass | 22 June 2014, 15:21:31 UTC | fixed debug directory creation | 22 June 2014, 15:21:31 UTC |
| 848cefa | fenderglass | 22 June 2014, 11:18:27 UTC | mammals notice | 22 June 2014, 11:18:27 UTC |
| b0c4871 | fenderglass | 22 June 2014, 10:58:46 UTC | oups | 22 June 2014, 10:58:46 UTC |
| ac052d0 | fenderglass | 22 June 2014, 10:55:55 UTC | small fix | 22 June 2014, 10:55:55 UTC |
| bf19ec7 | fenderglass | 22 June 2014, 10:54:10 UTC | assemblers mentioned | 22 June 2014, 10:54:10 UTC |
