https://github.com/GPflow/GPflow

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62472ea Merge pull request #167 from GPflow/hmc_options adding extra args to model.sample to pass through to hmc 18 August 2016, 15:08:01 UTC
cbc60d4 adding extra args to model.sample to pass through to hmc 18 August 2016, 14:45:01 UTC
40b13f5 Merge branch 'mathDR-pretty_plot' into sphinx 16 August 2016, 07:36:44 UTC
7058fb0 ipynb merge 16 August 2016, 07:35:53 UTC
bfacae6 added fill_between plotting and maxiter 15 August 2016, 23:19:00 UTC
28b19a6 silly git, those are duplicated entries. re-merging setup.py 15 August 2016, 17:13:05 UTC
2635f31 Merge branch 'sphinx' of github.com:gpflow/GPflow into sphinx 15 August 2016, 16:44:11 UTC
3510670 simple merge in setup.py 15 August 2016, 16:43:58 UTC
63bb484 Fixed custom op test failing (#165) * Fixed custom op test failing. * Incrementing version number and adding description of new version. * Changes to make setup.py work correctly with tfops 15 August 2016, 16:43:02 UTC
5814d8d Merge branch 'master' into sphinx 15 August 2016, 16:03:17 UTC
1076e47 Fixes #161 (#164) * Fixes #161 * pep8ified test_likelihoods 15 August 2016, 11:10:45 UTC
d9707b8 adding docs badge 15 August 2016, 09:37:12 UTC
0cb1ebb minor edits in milticlass notebook 13 August 2016, 15:30:35 UTC
dd454d4 added DM's suggestions of vgp notes 12 August 2016, 21:05:42 UTC
4874915 minor edits in vgp notebook 12 August 2016, 16:56:00 UTC
ae9e306 fixing some signs in VGP_notes 12 August 2016, 16:40:33 UTC
55cd0f4 slight updates to VGP notes 12 August 2016, 07:28:15 UTC
b413037 minor edits 11 August 2016, 16:01:11 UTC
f8a900e some tidying in rst files 11 August 2016, 15:59:09 UTC
5dd6fc3 adding notes for VGP implementation 11 August 2016, 15:43:08 UTC
7baf773 autodoccing priors, likelihoods, etc 11 August 2016, 13:46:46 UTC
97626fb more docstring improvements 11 August 2016, 13:06:37 UTC
f45232e significant improvements to autodoccing 11 August 2016, 12:54:20 UTC
b498690 autodoc works better with autosummary 11 August 2016, 10:32:02 UTC
452b5f8 Merge branch 'master' into ordinal 11 August 2016, 09:45:08 UTC
6f36c1a tf0.8 as minimum 10 August 2016, 19:26:11 UTC
1ad6ed4 spend a long time fiddling with an equation 10 August 2016, 19:05:57 UTC
414cd19 fiddling with setup.py 10 August 2016, 17:46:52 UTC
4c8c939 chanegd manifest 10 August 2016, 17:33:26 UTC
26f7f24 first attempt at a manifest file 10 August 2016, 17:26:49 UTC
847802d forcing absolute imports 10 August 2016, 17:19:12 UTC
e488d6f fixing import error 10 August 2016, 17:08:49 UTC
fafac6a adding pandas to docs-require 10 August 2016, 17:03:50 UTC
88fdb65 adding scipt to docs_require 10 August 2016, 17:01:24 UTC
ed2b401 using python 3.4 on readthedocs 10 August 2016, 16:36:16 UTC
915388a adding tensorflow to docs_require 10 August 2016, 16:27:45 UTC
b4188fe built an intro page based on the readme 10 August 2016, 16:18:29 UTC
dc6c830 adding docs_require.txt 10 August 2016, 13:55:50 UTC
f8b24a1 Merge branch 'master' into sphinx 10 August 2016, 13:37:37 UTC
c50f9c9 improved headings 10 August 2016, 13:37:19 UTC
f5e5303 Merge branch 'master' into sphinx 10 August 2016, 13:33:46 UTC
b3dab02 use batch ops in KLs and conditionals (#159) * adding a simple Uniform prior * fixed sign bug * removed python loops from KL code * removed python loop from conditionals * removing loops from conditionals.py * removed loops form vgp * removing dead code 10 August 2016, 13:07:00 UTC
3cc5604 adding coregion kernel (#139) * adding coregion kernel * tests for Coregino kernel * slight iprovements to Coregion docstring 10 August 2016, 09:59:44 UTC
57a6c69 adding a simple Uniform prior (#146) * adding a simple Uniform prior * fixed sign bug 10 August 2016, 09:38:35 UTC
4afd445 merged 09 August 2016, 18:47:39 UTC
5726dd4 Fix covariance overparameterisation (#150) GPflow often optimizes positive-definite matrices. To maintain positive-definiteness without constrained optimization, a lower-triangular matrix is optimized. Sigma + L L ^T The previous approach to optimizing L was to ignore the upper half. The mean that there were some extra variables in the optimization vector, which did nothing. This PR implements a tensorflow op which transforms back-and-forth between triangular matrix L and a 'packed' vector representation. The result is that there are no redundant parameters in the optimization vector. 09 August 2016, 18:39:33 UTC
9c2faf6 add Apache headers (fix #135) (#157) 09 August 2016, 09:41:58 UTC
87dad9f Fixed optimiser options to be consistent with scipy (#153) * Fixed optimiser options to be consistent with scipy. * Bumped version & added deprecation warnings. 09 August 2016, 09:21:08 UTC
3f6f063 Get tests working with Python 3. (#152) - Added relative imports (.reference) - Changed all failIf/Unless to the non-deprecated assertTrue/False. 02 August 2016, 11:06:21 UTC
2d98580 Merge pull request #151 from GPflow/active_dims_pickle_bug make kernels with active_dims pickleable 01 August 2016, 16:53:36 UTC
a509447 adding some notes on structure (unfinished) 31 July 2016, 19:17:53 UTC
1da8382 Merge branch 'master' into active_dims_pickle_bug 29 July 2016, 19:38:40 UTC
bd0b423 make kernels with active_dims pickleable 29 July 2016, 19:27:15 UTC
18ec355 Merge branch 'master' into sphinx 29 July 2016, 14:55:19 UTC
e155d76 Track logprobs (#136) * added code for returning log-densities from HMC * added test code for log-prob tracking * adding access to logprobs from model class 29 July 2016, 09:25:43 UTC
6fa46bb enables pickling with fixed parameters (#141) 28 July 2016, 16:30:51 UTC
e0719ed some small edits to keep GPflow working with python 3 (#137) * python3.5 compat in test_likelihoods * py35 compatibility in autoflow 28 July 2016, 16:12:19 UTC
b4a8d1b made transforms all pickleable (#134) 27 July 2016, 14:40:51 UTC
47cdb8f latex related edits 27 July 2016, 11:34:20 UTC
ce59679 work on mcmc notebook 26 July 2016, 20:00:29 UTC
3438b29 minor kernels edits 26 July 2016, 16:49:37 UTC
9342d0c adding kernels intro notebook 26 July 2016, 16:39:23 UTC
e921bdd includgin classification notebook 26 July 2016, 11:10:57 UTC
bd9bbc6 more skeletoning of the docs 26 July 2016, 11:07:12 UTC
d06a29b adding empty kernels notebook 26 July 2016, 09:18:45 UTC
6ef136a modified banana notebook 26 July 2016, 07:50:37 UTC
9577e38 enabled syntax highlighting, following this bug: https://github.com/spatialaudio/nbsphinx/issues/24 25 July 2016, 21:49:53 UTC
521dbcd improvements to regression notebook 25 July 2016, 14:58:12 UTC
359150e most of the things to buuld the docs 25 July 2016, 14:24:23 UTC
9497d34 A dummy commit to trigger codecov.io 24 July 2016, 12:05:57 UTC
b70aecc Merge branch 'master' into ordinal 14 July 2016, 12:34:02 UTC
ddd0c3f Merge pull request #130 from GPflow/autokill_autoflow Autokill autoflow 13 July 2016, 08:04:12 UTC
985946b extending test to cover simplified autoflow killing 12 July 2016, 21:52:16 UTC
486775c some simplification of kill_autoflow 12 July 2016, 21:45:01 UTC
211bc5f docstrings for ordinal 12 July 2016, 13:58:21 UTC
4211bb1 tests now cover ordinal 12 July 2016, 13:29:57 UTC
66b6d64 minor improvements to ordinal likelihoo and notebook 12 July 2016, 13:08:47 UTC
303865f Merge branch 'master' into ordinal 12 July 2016, 09:37:10 UTC
874957c Merge pull request #89 from GPflow/get_param_index a simple function to work out where a parameter is on the free_state 11 July 2016, 11:01:08 UTC
ce66d24 Merge branch 'master' into get_param_index 11 July 2016, 10:39:30 UTC
28fb48a Merge pull request #128 from GPflow/jitter_for_samples adding slight jitter to cholesky when computing samples 11 July 2016, 10:38:58 UTC
896ed83 Merge branch 'master' into get_param_index 11 July 2016, 08:36:00 UTC
31b48a1 Merge branch 'master' into jitter_for_samples 11 July 2016, 08:27:39 UTC
02286ca Merge pull request #127 from GPflow/softplus using the built-in softplus function for simplicity 11 July 2016, 08:27:20 UTC
30c2190 adding slight jitter to cholesky when computing samples 10 July 2016, 20:37:01 UTC
7172bd3 using the built-in softplu function for simplicity 10 July 2016, 07:01:58 UTC
691b20b minor edits to tests 09 July 2016, 13:25:40 UTC
3235b0d changes to regression ipynb 09 July 2016, 11:59:18 UTC
5ae3f60 minor edits in param.py - get_sample_dict became get_samples_df (since it retuns a datafram - set_parameter_dict no longer 'pops', resulting in an empty dict 09 July 2016, 11:57:35 UTC
1388d9f Merge branch 'master' into get_param_index 09 July 2016, 11:31:29 UTC
dc5ac86 Correction to VGP from @fujiisoup (#126) Correction to VGP from @fujiisoup. See also #125 09 July 2016, 10:54:46 UTC
2919d3c slight improvements to ordinal likelihood 09 July 2016, 10:03:23 UTC
e0b2217 Merge pull request #123 from GPflow/lognormal Lognormal 09 July 2016, 09:09:55 UTC
73488dc Merge branch 'master' into lognormal 09 July 2016, 08:59:24 UTC
e8df6fa initial work on ordinal regression 08 July 2016, 16:17:40 UTC
9d005bc Merge pull request #122 from GPflow/svi-example Extended svi_test.ipynb to show how to use the stochastic optimizer 08 July 2016, 15:18:59 UTC
f959f29 improvements to svi notebook 08 July 2016, 12:00:29 UTC
3722e10 correction to lognormal test 08 July 2016, 11:28:26 UTC
4f21e67 adding a lognormal prior 08 July 2016, 11:27:14 UTC
5faf578 Extended svi_test.ipynb to show how to use the stochastic optimizer. 08 July 2016, 10:54:18 UTC
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