9671514 | fenderglass | 18 June 2014, 14:53:29 UTC | distance estimation | 18 June 2014, 14:53:29 UTC |
0399e58 | fenderglass | 17 June 2014, 21:43:47 UTC | -pypi | 17 June 2014, 21:43:47 UTC |
b5f43a4 | fenderglass | 17 June 2014, 21:43:24 UTC | install docs | 17 June 2014, 21:43:24 UTC |
8b18060 | fenderglass | 17 June 2014, 21:30:58 UTC | changed exec name | 17 June 2014, 21:30:58 UTC |
3e09bf4 | fenderglass | 16 June 2014, 16:51:17 UTC | small fixes | 16 June 2014, 16:51:17 UTC |
de4c0c0 | fenderglass | 02 June 2014, 13:36:38 UTC | scripts renamed | 02 June 2014, 13:36:38 UTC |
b7d76f8 | fenderglass | 02 June 2014, 13:22:44 UTC | synteny blocks with coordinates | 02 June 2014, 13:22:44 UTC |
b65f81b | fenderglass | 31 May 2014, 17:46:03 UTC | minor usage fix | 31 May 2014, 17:46:03 UTC |
9eada68 | fenderglass | 31 May 2014, 17:36:04 UTC | few fixes | 31 May 2014, 17:36:04 UTC |
4b163c5 | fenderglass | 30 May 2014, 21:47:05 UTC | fixed ecoli recipe | 30 May 2014, 21:47:05 UTC |
ef9d49d | fenderglass | 28 May 2014, 20:40:13 UTC | site name | 28 May 2014, 20:40:13 UTC |
1fec816 | fenderglass | 28 May 2014, 12:38:26 UTC | documentation updated | 28 May 2014, 12:38:26 UTC |
821cb4e | fenderglass | 28 May 2014, 10:30:37 UTC | fix for str -> bool casting | 28 May 2014, 10:30:37 UTC |
c1cf33b | fenderglass | 27 May 2014, 17:30:11 UTC | new recipe format | 27 May 2014, 17:30:11 UTC |
e0e85ea | fenderglass | 27 May 2014, 15:42:46 UTC | small fixes in debug report | 27 May 2014, 15:42:46 UTC |
eab6cb6 | fenderglass | 26 May 2014, 10:00:20 UTC | license added, small fixes | 26 May 2014, 10:00:20 UTC |
2c286df | fenderglass | 25 May 2014, 09:01:35 UTC | updated cholerae alignment | 25 May 2014, 09:01:35 UTC |
098e67b | fenderglass | 24 May 2014, 20:34:15 UTC | fixed bug with chr names containing dots | 24 May 2014, 20:34:15 UTC |
81c4077 | fenderglass | 24 May 2014, 10:51:06 UTC | Merge branch 'devel' of github.com:fenderglass/Ragout into devel | 24 May 2014, 10:51:06 UTC |
0db0909 | fenderglass | 24 May 2014, 10:49:41 UTC | fixed debug statistics | 24 May 2014, 10:49:41 UTC |
8910a6f | AvdeevPavel | 23 May 2014, 21:27:25 UTC | My fix debug report and add my_has_path function. Maybe modificate to return len path. | 23 May 2014, 21:27:25 UTC |
c7cf686 | fenderglass | 23 May 2014, 20:36:19 UTC | infinity edges to correctly ork with chromosome ends | 23 May 2014, 20:36:19 UTC |
366f95a | fenderglass | 21 May 2014, 08:12:16 UTC | scripts updated | 21 May 2014, 08:12:16 UTC |
dc47ed0 | AvdeevPavel | 20 May 2014, 20:03:51 UTC | Add inversion scrypt | 20 May 2014, 20:03:51 UTC |
46ac790 | fenderglass | 19 May 2014, 22:46:54 UTC | manuals updated | 19 May 2014, 22:46:54 UTC |
59592d4 | fenderglass | 19 May 2014, 14:08:17 UTC | REFS removed from config | 19 May 2014, 14:08:17 UTC |
0805c25 | fenderglass | 19 May 2014, 11:57:22 UTC | only maximum overlaps | 19 May 2014, 11:57:22 UTC |
8e21fdb | fenderglass | 17 May 2014, 22:12:25 UTC | oups | 17 May 2014, 22:12:25 UTC |
0201cd2 | fenderglass | 17 May 2014, 22:03:12 UTC | faster merging | 17 May 2014, 22:03:12 UTC |
a0406aa | fenderglass | 17 May 2014, 21:25:32 UTC | Merge with pavel_devel | 17 May 2014, 21:25:32 UTC |
682e0c3 | fenderglass | 17 May 2014, 21:13:36 UTC | examples updated | 17 May 2014, 21:13:36 UTC |
87591fa | fenderglass | 17 May 2014, 15:24:23 UTC | maf synteny backend | 17 May 2014, 15:24:23 UTC |
130f0e6 | fenderglass | 17 May 2014, 13:41:10 UTC | Dima's FM-index incorporated | 17 May 2014, 13:41:10 UTC |
4d6ff67 | AvdeevPavel | 16 May 2014, 20:15:26 UTC | Add my_all_simple_path function | 16 May 2014, 20:15:26 UTC |
b81c52b | fenderglass | 16 May 2014, 16:58:08 UTC | new iterative version of m2s + new recipe format | 16 May 2014, 16:58:08 UTC |
5eeb464 | fenderglass | 15 May 2014, 13:09:00 UTC | guessing hidden edges | 15 May 2014, 13:09:00 UTC |
041ca77 | fenderglass | 14 May 2014, 15:23:53 UTC | small statistics improvement | 14 May 2014, 15:23:53 UTC |
c7960ed | fenderglass | 14 May 2014, 11:23:09 UTC | breakpoint graph partitoning hs slightly changed | 14 May 2014, 11:23:09 UTC |
5046f8e | fenderglass | 14 May 2014, 09:56:13 UTC | manual slightly improved | 14 May 2014, 09:56:13 UTC |
eba64ef | fenderglass | 13 May 2014, 13:30:14 UTC | small fix | 13 May 2014, 13:30:14 UTC |
efed1df | fenderglass | 13 May 2014, 13:18:57 UTC | some statistics | 13 May 2014, 13:18:57 UTC |
2ff6eec | kolmogorov | 13 May 2014, 12:07:50 UTC | parser improved | 13 May 2014, 12:07:50 UTC |
d68a0e0 | kolmogorov | 13 May 2014, 09:20:21 UTC | fatser fasta | 13 May 2014, 09:20:21 UTC |
0f7e508 | fenderglass | 13 May 2014, 08:57:50 UTC | some logging | 13 May 2014, 08:57:50 UTC |
5a9ef8f | fenderglass | 12 May 2014, 11:13:56 UTC | phylogeny checking before run | 12 May 2014, 11:13:56 UTC |
01de1ff | fenderglass | 12 May 2014, 09:24:02 UTC | config is now called recipe | 12 May 2014, 09:24:02 UTC |
3be102e | AvdeevPavel | 08 May 2014, 20:13:12 UTC | afte rmerge with good version | 08 May 2014, 20:13:12 UTC |
d5d1f2c | AvdeevPavel | 08 May 2014, 20:01:16 UTC | experiment version with buldges | 08 May 2014, 20:01:16 UTC |
716081e | fenderglass | 08 May 2014, 13:57:17 UTC | new permutations naming convention: genome.chomosome | 08 May 2014, 13:57:17 UTC |
34dbfe1 | fenderglass | 07 May 2014, 16:15:26 UTC | executable name changed | 07 May 2014, 16:15:26 UTC |
83507dc | fenderglass | 07 May 2014, 12:28:12 UTC | small change | 07 May 2014, 12:28:12 UTC |
1db8c46 | fenderglass | 07 May 2014, 11:41:52 UTC | installation script without wget | 07 May 2014, 11:41:52 UTC |
458e299 | fenderglass | 04 May 2014, 17:39:58 UTC | fixed bug + debug-report noew works with assembly graph | 04 May 2014, 17:39:58 UTC |
dbbae63 | fenderglass | 04 May 2014, 17:14:09 UTC | debrujn graph changed to overlap | 04 May 2014, 17:14:09 UTC |
219b1f7 | fenderglass | 01 May 2014, 10:02:21 UTC | debug-report outputs edges from assembly graph | 01 May 2014, 10:02:21 UTC |
fdd51a3 | AvdeevPavel | 29 April 2014, 13:28:34 UTC | Add new breakpoint graph output | 29 April 2014, 13:28:34 UTC |
c0ff991 | fenderglass | 26 April 2014, 15:48:55 UTC | guessing kmer size | 26 April 2014, 15:48:55 UTC |
4b42dde | fenderglass | 26 April 2014, 05:29:56 UTC | instal | 26 April 2014, 05:29:56 UTC |
c88cc53 | fenderglass | 26 April 2014, 05:18:40 UTC | docs updated | 26 April 2014, 05:18:40 UTC |
b9c0c95 | fenderglass | 17 April 2014, 12:48:24 UTC | oups | 17 April 2014, 12:48:24 UTC |
fb0a2ea | fenderglass | 17 April 2014, 12:47:54 UTC | cross-ilnks | 17 April 2014, 12:47:54 UTC |
6e2322e | fenderglass | 17 April 2014, 11:45:31 UTC | added link to install-sibelia.py | 17 April 2014, 11:45:31 UTC |
78d31da | fenderglass | 17 April 2014, 11:35:23 UTC | uploading to PyPI | 17 April 2014, 11:35:23 UTC |
89136a4 | fenderglass | 17 April 2014, 09:34:17 UTC | added setuptools bootstrap, installation script improved | 17 April 2014, 09:34:17 UTC |
fbf60af | fenderglass | 16 April 2014, 15:20:14 UTC | oups | 16 April 2014, 15:20:14 UTC |
0feea83 | fenderglass | 16 April 2014, 15:18:29 UTC | compilation under gcc46 | 16 April 2014, 15:18:29 UTC |
4a5248c | fenderglass | 16 April 2014, 12:39:29 UTC | some fixes | 16 April 2014, 12:39:29 UTC |
2ae2282 | fenderglass | 15 April 2014, 15:09:40 UTC | v0.2b | 15 April 2014, 15:09:40 UTC |
15e9dbf | fenderglass | 15 April 2014, 14:18:41 UTC | removed deprecated code | 15 April 2014, 14:18:41 UTC |
0672c97 | fenderglass | 15 April 2014, 12:18:59 UTC | inplace usage option | 15 April 2014, 12:18:59 UTC |
368a7d8 | fenderglass | 15 April 2014, 10:49:28 UTC | package fix | 15 April 2014, 10:49:28 UTC |
fc81a29 | fenderglass | 14 April 2014, 20:38:07 UTC | python package | 14 April 2014, 20:38:07 UTC |
fe7d04c | fenderglass | 14 April 2014, 17:10:42 UTC | c++ extensions catch Ctr-C; an attemt to create setup script | 14 April 2014, 17:10:42 UTC |
1491a04 | fenderglass | 12 April 2014, 09:27:59 UTC | example changed, sibelia now works with --fine | 12 April 2014, 09:27:59 UTC |
ace9ba2 | AvdeevPavel | 10 April 2014, 21:02:45 UTC | add output compress graph | 10 April 2014, 21:02:45 UTC |
ea4d9de | AvdeevPavel | 10 April 2014, 18:08:27 UTC | function for output graph and distance overlap graph | 10 April 2014, 18:08:27 UTC |
ff62ec1 | fenderglass | 10 April 2014, 15:09:57 UTC | exiting on error in synteny backend | 10 April 2014, 15:09:57 UTC |
f3a3669 | AvdeevPavel | 07 April 2014, 21:30:40 UTC | initial commit | 09 April 2014, 21:14:38 UTC |
07f50cb | fenderglass | 08 April 2014, 18:07:03 UTC | more pretty makefile | 08 April 2014, 18:07:03 UTC |
7880dfe | fenderglass | 08 April 2014, 17:53:41 UTC | manuals updated | 08 April 2014, 17:53:41 UTC |
8076599 | fenderglass | 08 April 2014, 17:19:32 UTC | checking python version | 08 April 2014, 17:19:32 UTC |
ab7b582 | fenderglass | 08 April 2014, 16:45:03 UTC | scripts now supports both 2 and 3 python version | 08 April 2014, 16:45:03 UTC |
1fbdc34 | fenderglass | 08 April 2014, 08:40:05 UTC | one more fix for c++0x | 08 April 2014, 08:40:05 UTC |
c29e7af | fenderglass | 08 April 2014, 08:23:30 UTC | fix for cmpilation under gcc4.6 + usage updated | 08 April 2014, 08:23:30 UTC |
ff7da05 | fenderglass | 07 April 2014, 17:00:16 UTC | cpp maf2synteny implementation incorporated + some fixes inside | 07 April 2014, 17:00:16 UTC |
6d64e70 | fenderglass | 03 April 2014, 21:18:57 UTC | maf2synteny speedup, memory leaks fixed | 03 April 2014, 21:18:57 UTC |
f2b439e | fenderglass | 01 April 2014, 16:42:18 UTC | parameter fixes | 01 April 2014, 16:42:18 UTC |
feaa357 | fenderglass | 01 April 2014, 16:09:22 UTC | interpreter changed to python2 | 01 April 2014, 16:09:22 UTC |
14d5993 | fenderglass | 01 April 2014, 16:08:39 UTC | some backported things | 01 April 2014, 16:08:39 UTC |
41974d7 | fenderglass | 01 April 2014, 16:08:12 UTC | maf2synteny finally works | 01 April 2014, 16:08:12 UTC |
915d1d1 | fenderglass | 31 March 2014, 17:23:59 UTC | rewritten | 31 March 2014, 17:23:59 UTC |
a95bc0e | fenderglass | 28 March 2014, 17:09:05 UTC | path compression and bulge removal seems to be working | 28 March 2014, 17:09:05 UTC |
d3368d3 | fenderglass | 26 March 2014, 14:50:15 UTC | maf parser partially implemented | 26 March 2014, 14:50:15 UTC |
298d2be | fenderglass | 26 March 2014, 13:26:12 UTC | compression algorithms in c++ | 26 March 2014, 13:26:12 UTC |
ab795cc | fenderglass | 25 March 2014, 17:03:08 UTC | started porting maf2synteny on c++ | 25 March 2014, 17:03:08 UTC |
c4d61e9 | fenderglass | 24 March 2014, 12:24:02 UTC | more refactoring | 24 March 2014, 12:24:02 UTC |
89ed1ad | fenderglass | 21 March 2014, 15:59:11 UTC | small fix | 21 March 2014, 15:59:11 UTC |
be3a049 | fenderglass | 21 March 2014, 15:34:21 UTC | ovelap tools as .so library. incorporated into pipeline | 21 March 2014, 15:34:21 UTC |
66138dc | fenderglass | 21 March 2014, 12:59:50 UTC | repo reorganisation | 21 March 2014, 12:59:50 UTC |
e6e1dd0 | fenderglass | 20 March 2014, 20:38:01 UTC | started repo reorganisation. added overlap sources | 20 March 2014, 20:38:01 UTC |