| fa4dca4 | Helge Dinkelbach | 11 December 2014, 07:47:02 UTC | Merge branch 'develop' | 11 December 2014, 07:47:02 UTC |
| c5ea9e9 | Helge Dinkelbach | 08 December 2014, 08:06:47 UTC | use OptionParser for command-line arguments. | 08 December 2014, 08:06:47 UTC |
| 5589150 | Julien Vitay | 01 December 2014, 18:56:20 UTC | Found segfault! Arrays for storing the random numbers in projection (rand0, rand1) were not modified by structural plasticity. Danke Helge! | 01 December 2014, 18:56:20 UTC |
| a3a99a6 | Julien Vitay | 01 December 2014, 15:11:10 UTC | Banks of filters with dimension reduction had a small bug. | 01 December 2014, 15:11:37 UTC |
| 370717b | Julien Vitay | 01 December 2014, 10:11:18 UTC | Added flags to creating and pruning | 01 December 2014, 10:11:18 UTC |
| 69e9c13 | Julien Vitay | 30 November 2014, 20:02:07 UTC | Long simulations can be interrupted with Ctrl+C | 30 November 2014, 20:06:23 UTC |
| fc5676c | Julien Vitay | 30 November 2014, 19:54:41 UTC | optimized CSR object. | 30 November 2014, 19:54:41 UTC |
| 8801d14 | Julien Vitay | 30 November 2014, 19:45:06 UTC | Shifted memory allocation to c++ instead of cython. | 30 November 2014, 19:45:06 UTC |
| fe7d872 | Julien Vitay | 29 November 2014, 14:06:30 UTC | PopulationView is not needed in the genrator. | 29 November 2014, 14:06:30 UTC |
| e2b34e0 | Julien Vitay | 29 November 2014, 13:44:13 UTC | Separated code generation for projections. | 29 November 2014, 13:44:13 UTC |
| 93d189f | Julien Vitay | 29 November 2014, 12:06:20 UTC | Code generation for populations is now in a separate file. | 29 November 2014, 12:06:20 UTC |
| 4103725 | Julien Vitay | 28 November 2014, 18:11:22 UTC | Pruning can depend on pre/post variables. | 28 November 2014, 18:11:22 UTC |
| 184159c | Julien Vitay | 28 November 2014, 17:57:32 UTC | Added random distributions for projections!!! | 28 November 2014, 17:57:32 UTC |
| 53d35bb | Julien Vitay | 28 November 2014, 17:07:12 UTC | Added pruning based on synapse description. | 28 November 2014, 17:07:12 UTC |
| e31daf8 | Julien Vitay | 28 November 2014, 13:15:33 UTC | Dendrite can also record with a given period. | 28 November 2014, 13:15:33 UTC |
| f0d25ea | Julien Vitay | 27 November 2014, 14:18:06 UTC | doc: period for recording. | 27 November 2014, 14:18:06 UTC |
| a7da535 | Julien Vitay | 27 November 2014, 13:57:03 UTC | Changed the recoring interface: offset is relative to the time when start_record is called. The period is in milliseconds. | 27 November 2014, 13:57:03 UTC |
| 22c4a0d | Julien Vitay | 27 November 2014, 12:27:15 UTC | Small bug | 27 November 2014, 12:27:15 UTC |
| b73929e | Julien Vitay | 27 November 2014, 12:17:50 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 27 November 2014, 12:17:50 UTC |
| fbf941f | Julien Vitay | 27 November 2014, 12:15:25 UTC | Populations can now be enabled or disabled. | 27 November 2014, 12:15:25 UTC |
| c169f36 | Helge Dinkelbach | 26 November 2014, 18:04:37 UTC | Recording of population variables is extended by recording period and offset. | 26 November 2014, 18:04:37 UTC |
| 885dd1e | Julien Vitay | 26 November 2014, 15:01:20 UTC | Added delays to shared projections. | 26 November 2014, 15:01:20 UTC |
| 716c6fc | Julien Vitay | 26 November 2014, 12:37:24 UTC | Fixed bug with subsampling. Added a center() method to SharedProjection to find the pre-coordinates of the center. | 26 November 2014, 12:37:24 UTC |
| b2e72bb | Julien Vitay | 26 November 2014, 10:17:05 UTC | Bug in SHaredProjection with explicit subsampling | 26 November 2014, 10:17:05 UTC |
| 236eaad | Julien Vitay | 25 November 2014, 16:26:27 UTC | SharedProjection._create() does not need to return self. | 25 November 2014, 16:26:27 UTC |
| 2ca8bed | Julien Vitay | 25 November 2014, 16:25:50 UTC | Merge branch 'master' of bitbucket.org:annarchy/annarchy-4.0 | 25 November 2014, 16:25:50 UTC |
| 85fd5d0 | Julien Vitay | 25 November 2014, 16:24:58 UTC | Restored STP. | 25 November 2014, 16:24:58 UTC |
| 256abc5 | Helge Dinkelbach | 25 November 2014, 16:19:50 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy-4.0 into develop | 25 November 2014, 16:19:50 UTC |
| 4e86169 | Helge Dinkelbach | 25 November 2014, 16:16:21 UTC | bugfix: the functions convolve, pooling and copy return a reference to the SharedProjection object | 25 November 2014, 16:16:21 UTC |
| 0e757a0 | Julien Vitay | 25 November 2014, 15:27:25 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 25 November 2014, 15:27:25 UTC |
| bafac11 | Julien Vitay | 25 November 2014, 15:26:58 UTC | Added standard rate-coded neuron ans synapse models. | 25 November 2014, 15:26:58 UTC |
| 1617475 | Helge Dinkelbach | 25 November 2014, 15:18:31 UTC | Bugfix: connect_gaussian was calling _store_csr(...) incompletely. | 25 November 2014, 15:18:31 UTC |
| 72baec0 | Julien Vitay | 25 November 2014, 11:23:48 UTC | Added 'isi' mode to Spike2ratePopulation. | 25 November 2014, 11:23:48 UTC |
| 41f8d46 | Julien Vitay | 21 November 2014, 15:19:08 UTC | Added a copy() method to SharedProjection. | 21 November 2014, 15:19:08 UTC |
| 4531f22 | Julien Vitay | 20 November 2014, 15:01:01 UTC | Merge branch 'master' into develop | 20 November 2014, 15:01:01 UTC |
| 8c5d749 | Julien Vitay | 20 November 2014, 14:52:41 UTC | Import in weightsharing/__init__.py was missing. | 20 November 2014, 14:52:41 UTC |
| a8c02c4 | Julien Vitay | 20 November 2014, 14:42:21 UTC | weightsharing is a module. | 20 November 2014, 14:42:21 UTC |
| a15e839 | Julien Vitay | 20 November 2014, 14:41:20 UTC | Forgot to declare weighsharing as a module. | 20 November 2014, 14:41:20 UTC |
| 68a4571 | Julien Vitay | 20 November 2014, 14:25:26 UTC | Started version 4.3.2. | 20 November 2014, 14:25:26 UTC |
| 60c374f | Julien Vitay | 20 November 2014, 14:20:01 UTC | Finished documentation of weight sharing. | 20 November 2014, 14:23:19 UTC |
| d7f2edd | Julien Vitay | 19 November 2014, 19:05:03 UTC | Changed the naming convention for convolution according to the last discussion. | 19 November 2014, 19:05:03 UTC |
| 08f74df | Julien Vitay | 18 November 2014, 13:04:14 UTC | Improved OMP prallel comp for weight sharing. | 18 November 2014, 13:04:14 UTC |
| 5fbc308 | Julien Vitay | 18 November 2014, 09:56:19 UTC | connect_one_to_one was incredibely slow because of the shift mechanism. | 18 November 2014, 09:56:19 UTC |
| 0806f73 | Julien Vitay | 17 November 2014, 10:58:33 UTC | Started documentation for weight sharing. | 17 November 2014, 10:58:33 UTC |
| 3a55ed3 | Julien Vitay | 16 November 2014, 00:26:41 UTC | Added banks of filters: filters are the first index, but they are pooled in the last dimension of the post pop. | 16 November 2014, 00:26:41 UTC |
| b4b368a | Julien Vitay | 13 November 2014, 20:30:22 UTC | Small bug when checking geometry. | 13 November 2014, 20:30:22 UTC |
| a1bfe58 | Julien Vitay | 13 November 2014, 19:37:41 UTC | Merge branch 'wsharing' of bitbucket.org:annarchy/annarchy-4.0 into wsharing Conflicts: ANNarchy/extensions/weightsharing/SharedProjection.py | 13 November 2014, 19:37:41 UTC |
| aad1a23 | Julien Vitay | 13 November 2014, 19:30:30 UTC | Weight sharing works, except banks of filters. | 13 November 2014, 19:30:30 UTC |
| 0fbc761 | Julien Vitay | 12 November 2014, 21:32:02 UTC | Added a check. | 12 November 2014, 21:32:02 UTC |
| 3502f0b | Julien Vitay | 12 November 2014, 16:51:25 UTC | Basic convolution works in 2D and 3D. | 12 November 2014, 16:51:25 UTC |
| b45e9f3 | Julien Vitay | 11 November 2014, 13:22:01 UTC | Implemented SahredProjection using templates, but does the same as default for now.... | 11 November 2014, 13:22:01 UTC |
| 32b1f32 | Julien Vitay | 11 November 2014, 10:09:28 UTC | The scalng of Spike2RatePopulation did not make any sense. | 11 November 2014, 10:11:42 UTC |
| bfcd893 | Julien Vitay | 09 November 2014, 23:02:19 UTC | Non-linear synapses can come from different projections. | 09 November 2014, 23:04:03 UTC |
| 8beaebe | Julien Vitay | 09 November 2014, 22:22:38 UTC | Added a connect_from_matrix() connector method. Very slow, but useful for small networks. | 09 November 2014, 22:22:38 UTC |
| 5ea4276 | Julien Vitay | 09 November 2014, 22:13:09 UTC | Added an example of non-linear synapse. | 09 November 2014, 22:18:20 UTC |
| 0e988ab | Julien Vitay | 09 November 2014, 20:55:56 UTC | Fixed non-linear summation of spiking synapses. | 09 November 2014, 20:55:56 UTC |
| 7c5f113 | Julien Vitay | 05 November 2014, 14:58:07 UTC | Improved error messages when rank_from_coordinates fails. | 05 November 2014, 14:58:07 UTC |
| cd209b5 | Helge Dinkelbach | 05 November 2014, 07:24:41 UTC | readded extra_values (suppressed in 8e82f2c) | 05 November 2014, 07:24:41 UTC |
| 46caa53 | Julien Vitay | 04 November 2014, 11:07:59 UTC | If the CSR is badly constructed with multiple entries per postsynaptic neurons, the CSR object is rearranged. Fixed a bug in accessing dendrites. | 04 November 2014, 11:07:59 UTC |
| e58801c | Julien Vitay | 03 November 2014, 18:48:56 UTC | Cython connectors can now use add(). push_back() is kept for compatibility. | 03 November 2014, 18:48:56 UTC |
| cfc458f | Julien Vitay | 02 November 2014, 22:08:25 UTC | CLeaned the code for random numbers. | 02 November 2014, 22:08:25 UTC |
| f46e985 | Julien Vitay | 02 November 2014, 22:04:13 UTC | The seed for random numbers know works. Suppressed for the individual distributions. | 02 November 2014, 22:04:13 UTC |
| 8d40838 | Julien Vitay | 02 November 2014, 21:23:03 UTC | Parallel number generation lead to segfaults when the number of threads is too high... We have to find a solution. | 02 November 2014, 21:23:03 UTC |
| ceb88ee | Julien Vitay | 29 October 2014, 09:32:08 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy-4.0 into develop | 29 October 2014, 09:32:08 UTC |
| 712a022 | Julien Vitay | 29 October 2014, 09:04:44 UTC | Fixed two bugs: - uniform delays were not correctly analysed when a single post-synaptic neuron is used. - Populationviews called a cyInstance before compile(). | 29 October 2014, 09:04:44 UTC |
| 5283589 | Helge Dinkelbach | 28 October 2014, 13:19:45 UTC | fixed error in documentation according spike raster plot. | 28 October 2014, 13:19:45 UTC |
| 2852240 | Julien Vitay | 23 October 2014, 12:37:14 UTC | Started version 4.3.1. | 23 October 2014, 12:37:14 UTC |
| 8e82f2c | Julien Vitay | 23 October 2014, 12:34:27 UTC | Supressed extra_values. Added name and description to neurons/synapses for reporting. | 23 October 2014, 12:34:27 UTC |
| acc24a8 | Julien Vitay | 22 October 2014, 06:35:45 UTC | Added descriptions to the connection patterns. | 22 October 2014, 06:35:45 UTC |
| 60bd93a | Julien Vitay | 21 October 2014, 15:58:56 UTC | IMPORTANT: _populations and _projections are now lists, not dictionaries! Helge, you should replace in your CUDA generator: for name, pop in self.populations.iteritems(): and: for name, proj in self.projections.iteritems(): by: for pop in self.populations: and: for proj in self.projections: The key was never needed and the order of declaration is lost (I need it for reporting, plus the generated code is harder to read). | 21 October 2014, 15:58:56 UTC |
| 12615c3 | Julien Vitay | 21 October 2014, 13:58:50 UTC | Added the possible to save/load the connectivity from a file. | 21 October 2014, 13:58:50 UTC |
| 70d6272 | Julien Vitay | 20 October 2014, 11:05:43 UTC | Projection.size was wrong. | 20 October 2014, 11:05:43 UTC |
| 3e9a71b | Julien Vitay | 20 October 2014, 09:12:35 UTC | Optimized fixed_propbability. | 20 October 2014, 09:12:35 UTC |
| cc111d3 | Julien Vitay | 20 October 2014, 09:05:20 UTC | fixed_probability is f***ing slow. | 20 October 2014, 09:05:20 UTC |
| 11413a6 | Julien Vitay | 18 October 2014, 13:54:30 UTC | Fixed structural plasticity regarding the new inv_rank. | 18 October 2014, 13:54:30 UTC |
| 2af5efe | Julien Vitay | 17 October 2014, 22:58:54 UTC | Merge branch 'spike_propagation' into develop Conflicts: tests/tsodyks_markram/TsodyksMarkram.py | 17 October 2014, 22:58:54 UTC |
| aeaedc1 | Julien Vitay | 17 October 2014, 22:56:43 UTC | Added STP and STDP as standard synapses. | 17 October 2014, 22:56:43 UTC |
| 168b504 | Julien Vitay | 17 October 2014, 20:16:13 UTC | Added population_rate() to uitls. | 17 October 2014, 20:16:13 UTC |
| aca9091 | Julien Vitay | 17 October 2014, 18:03:50 UTC | The new spike propagation mechanism leads to huge speedups for spiking networks. | 17 October 2014, 18:03:50 UTC |
| 76ee17a | Julien Vitay | 17 October 2014, 10:08:33 UTC | Removed exact in TsodyksMarkram. | 17 October 2014, 10:08:33 UTC |
| 591c54c | Julien Vitay | 16 October 2014, 22:11:33 UTC | Fixed problem with dependencies. | 16 October 2014, 22:11:33 UTC |
| b7f602c | Julien Vitay | 16 October 2014, 22:09:25 UTC | Same with synapses | 16 October 2014, 22:09:25 UTC |
| c4bcd63 | Julien Vitay | 16 October 2014, 22:08:42 UTC | Error on depdencies when using ITE in neurons. | 16 October 2014, 22:08:42 UTC |
| 7bdfd17 | Julien Vitay | 16 October 2014, 22:05:46 UTC | First version of spike propagation. Works well with Izhikevich, not with TsodyksMarkram... | 16 October 2014, 22:05:46 UTC |
| 1bf8834 | Julien Vitay | 16 October 2014, 20:31:51 UTC | Simplified the call to Equarion in the parser. | 16 October 2014, 20:31:51 UTC |
| 43f3150 | Julien Vitay | 16 October 2014, 20:01:18 UTC | mnor change in error message. | 16 October 2014, 20:01:18 UTC |
| 68ed78a | Julien Vitay | 16 October 2014, 19:01:03 UTC | Fixed coupled equations. | 16 October 2014, 19:01:03 UTC |
| 1e1b42f | Julien Vitay | 16 October 2014, 15:29:03 UTC | FIxed replacing of variable names in the implicit method. | 16 October 2014, 15:29:03 UTC |
| 31d811e | Julien Vitay | 16 October 2014, 13:33:14 UTC | Merge branch 'event-driven' into develop | 16 October 2014, 13:33:14 UTC |
| 8fb1639 | Julien Vitay | 16 October 2014, 13:29:39 UTC | Improved error messages. | 16 October 2014, 13:29:39 UTC |
| 71aceb0 | Julien Vitay | 16 October 2014, 12:48:16 UTC | the print stack is stupid... | 16 October 2014, 12:48:16 UTC |
| 342543b | Julien Vitay | 16 October 2014, 11:37:10 UTC | Added a method connectivity_matrix() to Projection. | 16 October 2014, 11:37:10 UTC |
| 5dd7a3c | Julien Vitay | 16 October 2014, 06:58:00 UTC | Merge branch 'develop' into event-driven | 16 October 2014, 06:58:00 UTC |
| 7eb84d9 | Julien Vitay | 16 October 2014, 06:56:46 UTC | Added import numpy as np in Neuron. | 16 October 2014, 06:56:46 UTC |
| e66b3ee | Julien Vitay | 15 October 2014, 20:59:00 UTC | Allowed exact intergration of synaptic variables. | 15 October 2014, 20:59:00 UTC |
| 3a20bf0 | Julien Vitay | 15 October 2014, 15:03:54 UTC | Merge branch 'develop' of bitbucket.org:annarchy/annarchy into develop | 15 October 2014, 15:03:54 UTC |
| 5768c87 | Julien Vitay | 15 October 2014, 15:02:05 UTC | Fixed Dendrite.receptive_field() | 15 October 2014, 15:02:05 UTC |
| 760cb27 | Julia Schuster | 15 October 2014, 12:53:03 UTC | Merge branch 'develop' of https://bitbucket.org/annarchy/annarchy into develop | 15 October 2014, 12:53:03 UTC |
| bb842c7 | Julia Schuster | 15 October 2014, 12:52:07 UTC | reimplemented get_record(reshape=true). [hdinkelbach] | 15 October 2014, 12:52:07 UTC |
| dc5c1fa | Julien Vitay | 15 October 2014, 08:58:42 UTC | Fixed bug when generating early_stopping conditions. | 15 October 2014, 08:58:42 UTC |
