| 73ca3c1 | Julien Vitay | 08 June 2019, 15:54:20 UTC | Finished version 4.6.8 | 08 June 2019, 15:54:20 UTC |
| 0715623 | Julien Vitay | 08 June 2019, 15:43:44 UTC | Merge branch 'develop' | 08 June 2019, 15:43:44 UTC |
| de6c123 | Julien Vitay | 08 June 2019, 15:42:46 UTC | doc: added a notebook on using hyperopt | 08 June 2019, 15:42:46 UTC |
| e6f23fd | Julien Vitay | 08 June 2019, 13:58:14 UTC | Bug: proj.w = 1.0 not working when has_single_weight after compile. | 08 June 2019, 13:58:14 UTC |
| c909e37 | Helge Dinkelbach | 06 June 2019, 14:08:53 UTC | Fixed Python2.7 bug in previous commit. | 06 June 2019, 14:08:53 UTC |
| 512a62d | Helge Dinkelbach | 06 June 2019, 13:52:17 UTC | Fixed potential bug in load/save method for newer numpy version >=1.16.3. If an user wants to store .npz we use the numpy.save/numpy.load methods. For those numpy v1.16.3 changes the default values for allow_pickle. We define now the optional allow_pickle=True for numpy.save / numpy.load calls to remain with the behavior of older versions. | 06 June 2019, 13:52:17 UTC |
| d6fa1d7 | Julien Vitay | 25 May 2019, 10:45:08 UTC | Merge branch 'master' into develop | 25 May 2019, 10:45:08 UTC |
| 2b8e1a5 | Julien Vitay | 25 May 2019, 10:43:39 UTC | Fixed bug in load_parameters. Thanks @CarolinScholl. | 25 May 2019, 10:43:39 UTC |
| a9c40b0 | Helge Dinkelbach | 23 May 2019, 09:43:31 UTC | wrong setup argument in unittest. | 23 May 2019, 09:43:31 UTC |
| cd00dbe | Helge Dinkelbach | 23 May 2019, 09:35:13 UTC | Implemented CurrentInjection on CUDA devices. Added an unittest based on the example in the documentation. | 23 May 2019, 09:35:13 UTC |
| 5dd3956 | Helge Dinkelbach | 22 May 2019, 18:31:25 UTC | Merge branch 'develop' of https://ai.informatik.tu-chemnitz.de/gogs/annarchy/annarchy into develop | 22 May 2019, 18:31:25 UTC |
| 60fedcb | Helge Dinkelbach | 22 May 2019, 15:49:07 UTC | Implemented missing deallocators on GPUs. | 22 May 2019, 18:16:47 UTC |
| af31557 | Julien Vitay | 22 May 2019, 18:11:27 UTC | Added a `CurrentInjection` specific population allowing to connect a rate-coded population to the conductance ofa spiking population. | 22 May 2019, 18:11:27 UTC |
| 72e0758 | Helge Dinkelbach | 20 May 2019, 17:48:43 UTC | Bugfix to commit: b65cc445a5 The host defines of built-in functions are required for some parts of the CPU side implementation. | 20 May 2019, 17:48:43 UTC |
| b65cc44 | Helge Dinkelbach | 20 May 2019, 14:53:41 UTC | Added the built-in method power() on GPUs. The equation interface of ANNarchy provides a custom power() method to implement a power function with integer exponents as loop and instead of pow(). | 20 May 2019, 14:53:41 UTC |
| 8d90fae | Helge Dinkelbach | 20 May 2019, 08:02:39 UTC | Bugfix in CUDA introduced by commit 90d33f. | 20 May 2019, 08:02:39 UTC |
| 6979f0a | Helge Dinkelbach | 16 May 2019, 06:47:42 UTC | Disabled by default the openMP parallelization of event-driven synaptic transmission. By providing disable_omp=False to Projection() one can enable this if required. | 16 May 2019, 06:47:42 UTC |
| 0ca9a56 | Julien Vitay | 15 May 2019, 18:32:31 UTC | Merge branch 'master' into develop | 15 May 2019, 18:32:31 UTC |
| 127f88a | Julien Vitay | 15 May 2019, 18:31:35 UTC | Left some prints | 15 May 2019, 18:31:35 UTC |
| f6bd0a7 | Julien Vitay | 15 May 2019, 18:30:38 UTC | Added ``clear_all_callbacks()`` method. | 15 May 2019, 18:30:38 UTC |
| 12e7552 | Julien Vitay | 15 May 2019, 14:52:23 UTC | Merge branch 'master' into develop | 15 May 2019, 14:52:23 UTC |
| 5610bfb | Julien Vitay | 15 May 2019, 14:49:37 UTC | Bug in simulate_with_callbacks (@every) which could not sort spike times correctly with different callbacks. | 15 May 2019, 14:49:37 UTC |
| 90d33f9 | Helge Dinkelbach | 15 May 2019, 08:41:27 UTC | Separated intialization of the C++ RNG distribution objects from the other initializations. Otherwise, RNGs which depends on population variables, like: Neuron( parameters=""" mean = 0.0 : population sigma = 1.0 : population """, equations=""" r = Normal(mean, sigma) """ ) will not work. | 15 May 2019, 08:41:27 UTC |
| 7942450 | Helge Dinkelbach | 14 May 2019, 09:12:12 UTC | Merge branch 'develop' of https://ai.informatik.tu-chemnitz.de/gogs/annarchy/annarchy into develop | 14 May 2019, 09:12:12 UTC |
| 38a125e | Helge Dinkelbach | 14 May 2019, 09:11:11 UTC | Added another test for structural plasticity. A potential bug remains: the original connectivity is not reset by Projection.reset(). | 14 May 2019, 09:11:11 UTC |
| 445966b | Julien Vitay | 07 May 2019, 21:00:15 UTC | removed new convolution class, aybe later | 07 May 2019, 21:00:15 UTC |
| 89ac4ac | Julien Vitay | 06 May 2019, 15:01:34 UTC | Merge branch 'develop' of https://ai.informatik.tu-chemnitz.de/gogs/annarchy/annarchy into develop | 06 May 2019, 15:01:34 UTC |
| 9140020 | Helge Dinkelbach | 04 May 2019, 06:24:16 UTC | Added flag to disable openMP parallelization for event-driven synaptic transmission. This can be useful for small sparsely connected neural networks. | 04 May 2019, 06:24:16 UTC |
| fc6d00a | Helge Dinkelbach | 02 May 2019, 05:36:50 UTC | Bugfix: profile_enabled=True provided to compile() was without effect. | 02 May 2019, 05:36:50 UTC |
| 9a9fff6 | Helge Dinkelbach | 30 April 2019, 13:46:08 UTC | Extend of commit 2c25ec1 | 30 April 2019, 13:46:08 UTC |
| d23c6a5 | Helge Dinkelbach | 30 April 2019, 13:05:46 UTC | Bugfix (CUDA) + Accessor Population.sum(target) was not working, as the psp results were not copied back at the end of simulate(). + code-error in mean-template. | 30 April 2019, 13:05:46 UTC |
| d24a45f | Helge Dinkelbach | 30 April 2019, 12:20:20 UTC | Global operations (min, max, mean, sum) in a Synapse definition are now implemented for CUDA. + updated docs. + added unittest for mean operation | 30 April 2019, 12:20:20 UTC |
| e77f976 | Helge Dinkelbach | 30 April 2019, 11:23:41 UTC | Merge branch 'develop' of https://ai.informatik.tu-chemnitz.de/gogs/annarchy/annarchy into develop | 30 April 2019, 11:23:41 UTC |
| f88f4ea | Helge Dinkelbach | 30 April 2019, 11:22:38 UTC | Extended unittests to check global operations used in Synapse definition. | 30 April 2019, 11:22:38 UTC |
| 2c25ec1 | Helge Dinkelbach | 29 April 2019, 18:29:51 UTC | Specific populations/projections can set 'size_in_bytes' in the _specific_template to overwrite the code generation for the C++ memory measurement. | 29 April 2019, 18:29:51 UTC |
| c35564f | Helge Dinkelbach | 29 April 2019, 14:03:18 UTC | Bugfix(CUDA): global operations in Synapse. There was a wrong initialization of array values which could lead to wrong results for MIN/MAX. | 29 April 2019, 14:03:18 UTC |
| feeab2d | Helge Dinkelbach | 25 April 2019, 15:23:51 UTC | Bugfix(CUDA): fixed key-error encountered by clear method of pop/proj monitor. Started to implement global operations used in psp on CUDA. | 25 April 2019, 15:25:15 UTC |
| 527808f | Helge Dinkelbach | 25 April 2019, 09:31:56 UTC | minor changes. + Global.clear() method calls _clear() methods of populations to destroy C++ objects. + Added error messages if global operations used on Synapse() descriptions if used on CUDA devices. | 25 April 2019, 09:31:56 UTC |
| d9f7463 | Julien Vitay | 24 April 2019, 12:25:03 UTC | doc: refreshed parallel_run() to be less comfusing. | 24 April 2019, 12:25:03 UTC |
| 6240634 | Julien Vitay | 24 April 2019, 11:16:03 UTC | Merge branch 'develop' of https://ai.informatik.tu-chemnitz.de/gogs/annarchy/annarchy into develop | 24 April 2019, 11:16:03 UTC |
| 7f654aa | Julien Vitay | 24 April 2019, 10:42:26 UTC | temporary modification of the convolution extension | 24 April 2019, 10:42:26 UTC |
| c8f7e43 | Helge Dinkelbach | 24 April 2019, 08:08:34 UTC | Implemented a monitor _clear() method to destroy C++ monitor instances. | 24 April 2019, 08:08:34 UTC |
| 6fc5b58 | Helge Dinkelbach | 23 April 2019, 17:12:59 UTC | Added a MemoryStats module. The module can be used to track the memory consumption of C++ objects within the simulation core. This can be especially useful to track the consumption of monitors. | 23 April 2019, 17:12:59 UTC |
| 0ecb970 | Julien Vitay | 23 April 2019, 07:47:50 UTC | docs: added new figure for the network structure | 23 April 2019, 07:47:50 UTC |
| 967fd9c | Julien Vitay | 17 April 2019, 12:27:04 UTC | attempt2 for GPU | 17 April 2019, 12:27:04 UTC |
| cc6c634 | Julien Vitay | 17 April 2019, 12:21:22 UTC | attempt on GPU | 17 April 2019, 12:21:22 UTC |
| f578bea | Julien Vitay | 17 April 2019, 12:12:28 UTC | SpikeSourceArray can now receive projections. | 17 April 2019, 12:12:28 UTC |
| c7048b8 | Helge Dinkelbach | 16 April 2019, 11:59:58 UTC | Shared projections need to override also _data() to disable the saving of projection data. | 16 April 2019, 11:59:58 UTC |
| 515da05 | Helge Dinkelbach | 16 April 2019, 11:20:39 UTC | minor bugfix. | 16 April 2019, 11:20:39 UTC |
| 94a9e72 | Helge Dinkelbach | 16 April 2019, 11:06:23 UTC | Bugfix: the same error as in commit 16860fa | 16 April 2019, 11:06:23 UTC |
| f7f7b34 | Helge Dinkelbach | 16 April 2019, 08:52:17 UTC | Splitted the implementation of weight sharing (SharedProjection) into three classes. This commit extends previous work (commit bd6b1f4d, 7329953) and copied the code for convolution / copy. We still need for the whole module unittests to verify ... | 16 April 2019, 08:52:17 UTC |
| 6801b30 | Helge Dinkelbach | 16 April 2019, 05:56:49 UTC | Added connector description to codegen.log | 16 April 2019, 05:56:49 UTC |
| 16860fa | Helge Dinkelbach | 15 April 2019, 14:33:44 UTC | Bugfix: flexible delays and SharedProjection (not fully tested yet) In the last release we allowed the change of synaptic delays outside of the connect method. This was forgotten for SharedProjections. Unittests are not existing yet ... | 15 April 2019, 14:33:44 UTC |
| 7efae41 | Helge Dinkelbach | 15 April 2019, 14:28:21 UTC | Python3.x compatibility: changed dict.iteritems() to dict.items(). Python2.7 users will not dramatically impaired by this as this dictionary is not that large. | 15 April 2019, 14:28:21 UTC |
| 5f8b582 | Helge Dinkelbach | 15 April 2019, 14:01:24 UTC | Started version 4.6.8 | 15 April 2019, 14:01:24 UTC |
| c52fc5d | Julien Vitay | 29 March 2019, 11:42:35 UTC | Bitbucket will only build master | 29 March 2019, 11:42:35 UTC |
| e1604f3 | Julien Vitay | 29 March 2019, 11:26:02 UTC | Updated requirements | 29 March 2019, 11:26:02 UTC |
| 64df4a7 | Julien Vitay | 29 March 2019, 11:22:22 UTC | Give python config when installing | 29 March 2019, 11:22:22 UTC |
| fe9dd03 | Julien Vitay | 29 March 2019, 10:49:34 UTC | language level should be an int | 29 March 2019, 10:49:34 UTC |
| ea7adf9 | Julien Vitay | 29 March 2019, 10:35:40 UTC | cython should stop emitting numpy warnings when installing | 29 March 2019, 10:35:40 UTC |
| 3f48e68 | Julien Vitay | 29 March 2019, 10:25:50 UTC | Get rid of cython's futurewarning | 29 March 2019, 10:25:50 UTC |
| 2ae10ba | Julien Vitay | 29 March 2019, 09:55:18 UTC | forgot subprocess | 29 March 2019, 09:55:18 UTC |
| fc73dd4 | Julien Vitay | 29 March 2019, 09:53:28 UTC | python_environment() is partially copied to setup.py, to avoid dependency on ANNarchy before installing ANNarchy. | 29 March 2019, 09:53:28 UTC |
| c9440a6 | Julien Vitay | 29 March 2019, 09:33:26 UTC | Updated installation instructions | 29 March 2019, 09:33:26 UTC |
| bf26532 | Julien Vitay | 29 March 2019, 08:33:35 UTC | Preparing release | 29 March 2019, 08:33:35 UTC |
| 6c21d71 | Helge Dinkelbach | 26 March 2019, 15:53:27 UTC | Bugfix: update of delayed spiking container code should be only added if there are synaptic delays. | 26 March 2019, 15:53:27 UTC |
| 0a2fa63 | Helge Dinkelbach | 13 March 2019, 15:50:51 UTC | small addition to commit 6f28a80 . + reset of the r-vector within reset(). | 13 March 2019, 15:50:51 UTC |
| 6f28a80 | Helge Dinkelbach | 13 March 2019, 15:29:05 UTC | TimedArray improvement. With the help of Alex we added several new unittests for TimedArray (until now only successful compilation was tested): + Removed doubled dictionary entry. + Removed wrong reinitialization of the firing rate. + Added unittests to verify correctness. | 13 March 2019, 15:29:05 UTC |
| eb50e3b | Helge Dinkelbach | 06 March 2019, 14:07:16 UTC | CUDA: added initial guess for kernel config if CudaCheck returns wrong values. | 06 March 2019, 14:07:16 UTC |
| 6dc9d1d | Helge Dinkelbach | 06 March 2019, 13:51:20 UTC | replaced from cuda_check import by dynamic load of the shared library. | 06 March 2019, 13:51:20 UTC |
| 88eed47 | Helge Dinkelbach | 06 March 2019, 07:26:00 UTC | removed relative imports of cuda_check (shared library) in CudaCheck python class. | 06 March 2019, 07:26:00 UTC |
| 0b496be | Helge Dinkelbach | 28 February 2019, 10:37:20 UTC | some work on unittests and refactoring. + replaced some occurences of dendrite.rank and further updated doc + excluded rate transmission with nonuniform delay test for GPUs + test_Connectivity: PEP8 compliance + test_NeuronUpdate: restructured, added boundary test, PEP8 compliance | 28 February 2019, 14:18:17 UTC |
| 991530a | Helge Dinkelbach | 27 February 2019, 14:14:13 UTC | dendrite.pre_ranks property should be used in future. | 27 February 2019, 14:14:13 UTC |
| 9491cc7 | Julien Vitay | 27 February 2019, 13:50:22 UTC | doc: non-uniform delays are not slow anymore | 27 February 2019, 13:50:22 UTC |
| cd9e573 | Julien Vitay | 27 February 2019, 13:48:01 UTC | Dendrite: the use of dendrite.rank is deprecated, use dendrite.pre_ranks instead. | 27 February 2019, 13:48:01 UTC |
| 8804ff4 | Helge Dinkelbach | 27 February 2019, 13:02:15 UTC | Updated RateTransmission test to cover also synaptic delays. | 27 February 2019, 13:02:15 UTC |
| 8d1c51d | Helge Dinkelbach | 26 February 2019, 13:25:07 UTC | Merge branch 'develop' of https://ai.informatik.tu-chemnitz.de/gogs/annarchy/annarchy into develop | 26 February 2019, 13:25:07 UTC |
| 7852236 | Helge Dinkelbach | 26 February 2019, 07:42:34 UTC | Code improvements in Compiler module. + added check for CUDA CC < 30, as the recent SDKs (>9.0), does only support Kepler and above, we check for the version and hint possible problems. + code adaptations to increase PEP8 compliance (trailing spaces, misplaced spaces etc.) | 26 February 2019, 07:42:34 UTC |
| 1d57625 | Helge Dinkelbach | 25 February 2019, 15:58:51 UTC | Merge branch 'fast_variable_delays' into develop + minor fix on CUDA side. | 25 February 2019, 15:58:51 UTC |
| e2a1f77 | Helge Dinkelbach | 22 February 2019, 16:50:53 UTC | extended unit tests for structural plasticity. | 22 February 2019, 16:50:53 UTC |
| 0cc66d2 | Julien Vitay | 20 February 2019, 13:20:16 UTC | CUDA at least compiles now, but not implemented | 20 February 2019, 13:20:16 UTC |
| fe6580e | Helge Dinkelbach | 15 February 2019, 08:21:48 UTC | Bugfix: parentheses error in openMP template within the last commit (found by unittests) | 15 February 2019, 08:25:22 UTC |
| 132f0ca | Helge Dinkelbach | 15 February 2019, 08:05:47 UTC | Several bugfixes related to CSR storage format (not completed yet ...) The currently available CSR implementation seems to target only a pre_to_post matrix order, which is obviously problematic. I particularly fixed that, but the CSR implementation is still in an unstable state ... I also disabled the proj._dense mode as it is for LIL format (default) completely without effect and leads to errors in case of CSR format. | 15 February 2019, 08:05:47 UTC |
| b5a65cd | Helge Dinkelbach | 14 February 2019, 17:02:21 UTC | CodeGenerator: added helper function. During compile() a log file is created which stores a mapping between network object (popX, projX) to the generated source files. | 14 February 2019, 17:02:21 UTC |
| 0701308 | Julien Vitay | 13 February 2019, 09:51:44 UTC | Merge branch 'develop' into fast_variable_delays | 13 February 2019, 09:51:44 UTC |
| e4b9c8c | Julien Vitay | 13 February 2019, 09:50:50 UTC | Population._load_pop_data: exception was not catched | 13 February 2019, 09:50:50 UTC |
| 26d7a32 | Julien Vitay | 13 February 2019, 09:49:44 UTC | Merge branch 'develop' of https://ai.informatik.tu-chemnitz.de/gogs/annarchy/annarchy into develop | 13 February 2019, 09:49:44 UTC |
| 31af92a | Julien Vitay | 13 February 2019, 09:47:49 UTC | Added comments to templates | 13 February 2019, 09:47:49 UTC |
| 10578f0 | Helge Dinkelbach | 06 February 2019, 14:51:54 UTC | Global functions added by add_function() were not available on CUDA devices. | 06 February 2019, 14:51:54 UTC |
| 7ea6301 | Helge Dinkelbach | 04 February 2019, 12:09:31 UTC | Bugfixes and modifications for save/load of projections. Bugfixes: + IO._load_data(): the data structure returned by np.load().files contained np.ndarray instead of dictionaries (py3, numpy 1.14.0) + Projection.save()/load(): in case of randomly drawn synaptic delays the delays are now stored. Enhancement: + added warning if connect_XXX is called twice. + added error message if create/pruning are used in Synapse() definition without enabling structural plasticity. + added save() method to Network class. | 06 February 2019, 10:01:57 UTC |
| ac3ed1d | Julien Vitay | 05 February 2019, 13:01:16 UTC | Merge branch 'develop' into fast_variable_delays | 05 February 2019, 13:01:16 UTC |
| eb55117 | Julien Vitay | 05 February 2019, 13:00:43 UTC | delays are now saved and loaded | 05 February 2019, 13:00:43 UTC |
| 06e573e | Julien Vitay | 05 February 2019, 11:08:47 UTC | Merge branch 'develop' of https://ai.informatik.tu-chemnitz.de/gogs/annarchy/annarchy into develop | 05 February 2019, 11:08:47 UTC |
| 39787e6 | Helge Dinkelbach | 17 January 2019, 16:25:17 UTC | Bugfix: if structural plasticity is enabled and uniform delays are used the implementation of removeSynapse() was not accounting all variables. | 17 January 2019, 16:25:17 UTC |
| 8392758 | Julien Vitay | 24 December 2018, 15:13:00 UTC | implemented ring buffer for spiking networks using variable delays TODO: CUDA interface broken | 24 December 2018, 15:13:00 UTC |
| 080e9dd | Julien Vitay | 22 December 2018, 12:39:15 UTC | first attempt to speedup spiking networks with variable delays. Speedup up impressive on COBA (1s instead of 50s...), but have to check validness | 22 December 2018, 12:39:15 UTC |
| 125ba59 | Julien Vitay | 22 December 2018, 08:39:16 UTC | added the possibility to change the delays after compilation. | 22 December 2018, 08:39:16 UTC |
| d704303 | Julien Vitay | 21 December 2018, 11:43:50 UTC | Merge branch 'late_instantiation' into develop | 21 December 2018, 11:43:50 UTC |
| b46ff98 | Julien Vitay | 20 December 2018, 07:25:13 UTC | doc: small typos | 20 December 2018, 07:25:13 UTC |
| 7819589 | Helge Dinkelbach | 08 October 2018, 07:40:36 UTC | Bugfix: attribute error in _load_proj_data() | 08 October 2018, 07:40:36 UTC |
