| 15a86d1 | Jay Hesselberth | 21 November 2016, 20:32:47 UTC | Merge branch 'release-0.1' | 21 November 2016, 20:32:47 UTC |
| c19ef7e | Jay Hesselberth | 21 November 2016, 17:33:25 UTC | respond to CRAN comments - remove 'BEDtools' from Description. | 21 November 2016, 17:33:25 UTC |
| b3943c7 | Jay Hesselberth | 21 November 2016, 16:07:00 UTC | small fixes to projection docs | 21 November 2016, 16:07:00 UTC |
| 525afe8 | Jay Hesselberth | 20 November 2016, 22:07:36 UTC | respond to CRAN by ignoring README.md | 20 November 2016, 22:07:36 UTC |
| d7fdc9b | Jay Hesselberth | 20 November 2016, 22:04:30 UTC | update docs with bed_projection | 20 November 2016, 22:04:30 UTC |
| 38b1fa9 | kriemo | 20 November 2016, 21:41:12 UTC | projection test implementation (bed_projection()) #148 (#149) * bed_projection() initial implementation * add examples and clarify documentation * handle missing x or y chroms * flatten intervals to prevent counting overlaps more than once per x interval * add tests for bed_projection * remove space * fix error in tss tbl due to typo * update variable names * add example of bed_projection usage * add bed_projection * put pbinom is stats namespace * update globals * change to new variable names * fix typo * fix typos * add bed_projection() * remove whitespace and fix indentation * add bed_projection | 20 November 2016, 21:41:12 UTC |
| 80761af | Jay Hesselberth | 20 November 2016, 16:02:42 UTC | respond to CRAN comments | 20 November 2016, 16:02:42 UTC |
| 98ec5f9 | Jay Hesselberth | 20 November 2016, 14:59:49 UTC | bump version and add install directions | 20 November 2016, 14:59:49 UTC |
| d253d85 | Jay Hesselberth | 20 November 2016, 02:33:08 UTC | re-pkg | 20 November 2016, 02:33:08 UTC |
| 47f4783 | Jay Hesselberth | 20 November 2016, 01:27:34 UTC | prep for release | 20 November 2016, 01:27:34 UTC |
| 75b8df1 | Jay Hesselberth | 19 November 2016, 13:43:11 UTC | win pandoc has trouble with cache - passes on win-builder | 19 November 2016, 13:43:11 UTC |
| f9a979e | Jay Hesselberth | 18 November 2016, 12:21:24 UTC | use builtin `p.adjust` instead of qvalue | 18 November 2016, 12:21:24 UTC |
| 5a68ef5 | Jay Hesselberth | 18 November 2016, 12:03:13 UTC | update vignettes - remove examples - add suggested packages - expand tidyverse packages | 18 November 2016, 12:03:13 UTC |
| c786731 | Jay Hesselberth | 17 November 2016, 21:30:57 UTC | build interval stats as html_vignette | 17 November 2016, 21:30:57 UTC |
| 753c608 | Jay Hesselberth | 17 November 2016, 19:57:39 UTC | small updates to readme and vignettes - re-pkg | 17 November 2016, 19:57:39 UTC |
| 0f7c75c | Jay Hesselberth | 17 November 2016, 12:53:19 UTC | bump Rcpp version | 17 November 2016, 12:53:19 UTC |
| 7dd94c2 | Jay Hesselberth | 16 November 2016, 12:42:43 UTC | update interval stats vignette - re-pkg articles | 16 November 2016, 12:42:43 UTC |
| 63fc05f | Jay Hesselberth | 16 November 2016, 12:41:32 UTC | fix dontrun sections in db docs | 16 November 2016, 12:41:32 UTC |
| 1bb2a9f | Jay Hesselberth | 16 November 2016, 12:26:02 UTC | Merge branch 'db' | 16 November 2016, 12:26:02 UTC |
| 971ba6c | Jay Hesselberth | 16 November 2016, 12:25:49 UTC | update db docs - add tests and re-pkg | 16 November 2016, 12:25:49 UTC |
| 852b419 | Jay Hesselberth | 16 November 2016, 04:17:18 UTC | add db funcs - update docs and readme | 16 November 2016, 04:17:18 UTC |
| ed739de | Jay Hesselberth | 16 November 2016, 02:49:14 UTC | ignore knitr cache files | 16 November 2016, 02:49:14 UTC |
| 9c812b9 | Jay Hesselberth | 16 November 2016, 02:48:20 UTC | more work on vignette | 16 November 2016, 02:48:20 UTC |
| 04f7a27 | Jay Hesselberth | 16 November 2016, 02:47:31 UTC | early db work | 16 November 2016, 02:47:31 UTC |
| 33160a9 | Jay Hesselberth | 14 November 2016, 22:07:01 UTC | fix article links | 14 November 2016, 22:07:01 UTC |
| c0506e4 | Jay Hesselberth | 14 November 2016, 21:57:20 UTC | re-pkg | 14 November 2016, 21:58:39 UTC |
| 753bec5 | Jay Hesselberth | 14 November 2016, 21:56:59 UTC | add interval stats vignette | 14 November 2016, 21:58:39 UTC |
| fd784cb | Jay Hesselberth | 14 November 2016, 02:13:01 UTC | update globals | 14 November 2016, 02:13:01 UTC |
| 2c4df03 | Jay Hesselberth | 13 November 2016, 23:44:17 UTC | make favicon with `convert` | 13 November 2016, 23:44:17 UTC |
| 047d435 | Jay Hesselberth | 13 November 2016, 21:40:05 UTC | suppress factor cols in return df | 13 November 2016, 21:40:05 UTC |
| 4d744f0 | Jay Hesselberth | 13 November 2016, 17:12:59 UTC | re-pkg - glyphs updated with new ggplot2 | 13 November 2016, 17:12:59 UTC |
| 8342607 | Jay Hesselberth | 12 November 2016, 15:08:02 UTC | sort result after binding rows | 12 November 2016, 15:08:02 UTC |
| b6f7294 | Jay Hesselberth | 12 November 2016, 15:07:43 UTC | use dot cols in returned df | 12 November 2016, 15:07:43 UTC |
| b63240c | Jay Hesselberth | 12 November 2016, 14:56:48 UTC | astyle | 12 November 2016, 14:56:48 UTC |
| c26c881 | Jay Hesselberth | 10 November 2016, 16:21:54 UTC | more auto | 10 November 2016, 16:21:54 UTC |
| 4e73e5f | Jay Hesselberth | 10 November 2016, 16:21:46 UTC | add copyright | 10 November 2016, 16:21:46 UTC |
| d61cde0 | Jay Hesselberth | 10 November 2016, 16:21:16 UTC | update logo | 10 November 2016, 16:21:16 UTC |
| 392d3f3 | Jay Hesselberth | 10 November 2016, 02:57:30 UTC | more auto iterator updates | 10 November 2016, 02:57:30 UTC |
| 9d7ca49 | Jay Hesselberth | 09 November 2016, 13:35:07 UTC | revert logo | 09 November 2016, 13:35:07 UTC |
| 38b5c31 | Jay Hesselberth | 08 November 2016, 14:31:28 UTC | square logo for favicon [ci skip] | 08 November 2016, 14:31:28 UTC |
| 5de7fee | Jay Hesselberth | 07 November 2016, 12:24:24 UTC | cpp/h file formatting with astyle - reformat all files - add test/helper (borrowed from dplyr) | 07 November 2016, 12:24:24 UTC |
| 8475d00 | Jay Hesselberth | 07 November 2016, 12:17:59 UTC | auto iterators and revert size_t | 07 November 2016, 12:17:59 UTC |
| 384fc7b | Jay Hesselberth | 07 November 2016, 03:15:09 UTC | use int instead of size_t | 07 November 2016, 03:15:09 UTC |
| 2423e98 | Jay Hesselberth | 06 November 2016, 21:33:07 UTC | remove Rcpp from Imports | 06 November 2016, 21:33:07 UTC |
| d7331cc | Jay Hesselberth | 06 November 2016, 20:18:52 UTC | improve linking in group docs | 06 November 2016, 20:18:52 UTC |
| a43a723 | Jay Hesselberth | 06 November 2016, 20:16:04 UTC | tests for glyph and slop - closes #140 | 06 November 2016, 20:16:04 UTC |
| be6b919 | Jay Hesselberth | 06 November 2016, 18:58:06 UTC | use `auto` with iterators | 06 November 2016, 18:58:06 UTC |
| ef9f4e5 | Jay Hesselberth | 03 November 2016, 17:32:23 UTC | re-pkg [ci skip] | 03 November 2016, 17:32:23 UTC |
| 4a2128d | kriemo | 03 November 2016, 17:05:08 UTC | bed_absdist() equation and bed_shuffle() reporting 137 138 (#139) * return result * fix latex error in equation * fix typo | 03 November 2016, 17:05:08 UTC |
| 3d26d76 | Jay Hesselberth | 02 November 2016, 10:18:19 UTC | let osx fail on travis | 02 November 2016, 10:18:19 UTC |
| eafc754 | Jay Hesselberth | 02 November 2016, 01:23:06 UTC | thorough doc edit - improve readability of examples with blank lines | 02 November 2016, 01:23:06 UTC |
| 748e93b | Jay Hesselberth | 02 November 2016, 01:02:20 UTC | Merge branch 'master' of github.com:jayhesselberth/valr | 02 November 2016, 01:02:20 UTC |
| aa5d0e8 | kriemo | 02 November 2016, 01:02:02 UTC | bed_merge() bug not allowing summaries issue#132 (#133) * test bed_merge() summary * change format_bed() to just reorder the input x tbl * add additional tests for bed_merge() * update format_bed() docs | 02 November 2016, 01:02:02 UTC |
| a7dd1cb | Jay Hesselberth | 01 November 2016, 20:01:55 UTC | ensure result is sorted | 01 November 2016, 20:01:55 UTC |
| 53c8db3 | Jay Hesselberth | 01 November 2016, 12:07:20 UTC | add `interval_spacing` | 01 November 2016, 12:07:20 UTC |
| c11812e | Jay Hesselberth | 01 November 2016, 00:39:09 UTC | fix travis errors | 01 November 2016, 00:39:09 UTC |
| f4081cb | Jay Hesselberth | 31 October 2016, 22:16:08 UTC | fix param name (again) | 31 October 2016, 22:16:08 UTC |
| 954d60e | Jay Hesselberth | 31 October 2016, 22:15:43 UTC | fix param name | 31 October 2016, 22:15:43 UTC |
| 0f70adc | Jay Hesselberth | 31 October 2016, 21:57:05 UTC | absdist eqn | 31 October 2016, 21:57:05 UTC |
| 83a2e26 | Jay Hesselberth | 31 October 2016, 21:48:32 UTC | add groups template to docs | 31 October 2016, 21:48:32 UTC |
| 23e88ba | kriemo | 31 October 2016, 18:45:14 UTC | #129 resubmit to master (#130) * store indices_x to ensure proper reporting by group * test stranded args | 31 October 2016, 18:45:14 UTC |
| 4037fa0 | Jay Hesselberth | 31 October 2016, 15:55:21 UTC | don't export interval_union | 31 October 2016, 15:55:21 UTC |
| 73abcd7 | Jay Hesselberth | 31 October 2016, 15:51:41 UTC | update home too | 31 October 2016, 15:51:41 UTC |
| e3476bb | Jay Hesselberth | 31 October 2016, 15:50:04 UTC | change `.dist` param in README / vignette | 31 October 2016, 15:50:04 UTC |
| 1fac3cc | Jay Hesselberth | 31 October 2016, 15:46:17 UTC | Merge branch 'master' of github.com:jayhesselberth/valr | 31 October 2016, 15:46:17 UTC |
| 6e0ae37 | Jay Hesselberth | 31 October 2016, 15:43:18 UTC | update strand handling (#128) - closes #125 - closes #127 * move chrom access outside of loop * add `flip_strands()` * update utilities - don't export internal funs - cleanup docs - new `check_suffix` fun * more consistent dot columns * update strand handling - for closest, cluster, instersect, merge, subtract - roxygenize - update tests * doc tweak * tweak docs and re-pkg * qualify group_by * update globals * remove is_sorted * strip/reassign groups in flip_strands() * tweak coverage colnames and docs - stranded tests are broken (@kriemo) - update jaccard Rd * re-pkg * remove strand params * update bed_closest - simplify param names, update examples and vignette - remove strand params and internal strand logic - improve docs - update tests * don't pass strand params | 31 October 2016, 15:43:18 UTC |
| a7853db | Jay Hesselberth | 30 October 2016, 13:22:25 UTC | move chrom access outside of loop | 30 October 2016, 13:22:25 UTC |
| 0123600 | Jay Hesselberth | 28 October 2016, 20:37:06 UTC | better example glyph for bed_cluster [ci skip] | 28 October 2016, 20:37:06 UTC |
| c90e8ce | Jay Hesselberth | 28 October 2016, 15:42:05 UTC | re-pkg [ci skip] | 28 October 2016, 15:42:05 UTC |
| f852e91 | Jay Hesselberth | 28 October 2016, 15:39:35 UTC | prevent labeling of input intervals in bed_glyph - fixes #115 | 28 October 2016, 15:39:35 UTC |
| 55537f3 | Jay Hesselberth | 27 October 2016, 15:51:39 UTC | upgrade to current Rcpp (0.12.7) | 27 October 2016, 15:51:39 UTC |
| 0f2e34a | Jay Hesselberth | 27 October 2016, 15:51:09 UTC | upgrade and re-pkg [ci skip] | 27 October 2016, 15:51:09 UTC |
| 0db7099 | Jay Hesselberth | 25 October 2016, 22:22:58 UTC | update and redown | 25 October 2016, 22:22:58 UTC |
| 88b4f95 | Jay Hesselberth | 25 October 2016, 12:21:56 UTC | redown | 25 October 2016, 12:21:56 UTC |
| 897c09a | Jay Hesselberth | 24 October 2016, 14:57:54 UTC | remove Rcpp from Depends | 24 October 2016, 14:57:54 UTC |
| c7d7f2a | Jay Hesselberth | 24 October 2016, 13:27:39 UTC | mention bed_glyph | 24 October 2016, 13:27:39 UTC |
| c7de078 | Jay Hesselberth | 24 October 2016, 12:00:50 UTC | add missing family tag to bed_map | 24 October 2016, 12:00:50 UTC |
| 579a3db | Jay Hesselberth | 24 October 2016, 10:49:28 UTC | remove non-portable PKG_CXXFLAGS | 24 October 2016, 10:49:28 UTC |
| 7d9ce2d | Jay Hesselberth | 24 October 2016, 10:37:53 UTC | add Rcpp v0.12.6 as remote to force install | 24 October 2016, 10:37:53 UTC |
| 813ad83 | Jay Hesselberth | 24 October 2016, 10:34:58 UTC | change comparison op for builds to pass | 24 October 2016, 10:34:58 UTC |
| 536bcaf | Jay Hesselberth | 23 October 2016, 14:49:12 UTC | salvage CRAN submission - back version down to 0.1 - add `-Wall -pedantic` flags to Makevars to more closely emulate CRAN win-builder - require Rcpp <= 0.12.6 (see r-appveyor/#80) - redown | 23 October 2016, 14:49:12 UTC |
| 79623a4 | Jay Hesselberth | 23 October 2016, 01:41:55 UTC | redown | 23 October 2016, 01:41:55 UTC |
| c8b3554 | kriemo | 23 October 2016, 01:31:54 UTC | Examples for format_bed and shared_groups (#114) * test format_bed * add exampled to format_bed and shared_groups * swap tribble for frame_data | 23 October 2016, 01:31:54 UTC |
| 54adf2b | Jay Hesselberth | 22 October 2016, 22:46:41 UTC | redown | 22 October 2016, 22:46:41 UTC |
| 0a49b39 | kriemo | 22 October 2016, 22:33:38 UTC | Absdist NA handling Closes #109 (#112) * fix NA handling to report all input x ivls back with NAs closes #109 * add shared_groups() fxn for setting x,y groups to minimum groupings * document shared_groups fxn * rename xy_groups and missing_x variables * set return value to null if there are no shared groups * add tests for shared_groups() * document conversion to a character vector | 22 October 2016, 22:33:38 UTC |
| a41827b | Jay Hesselberth | 21 October 2016, 16:41:00 UTC | compile with std=c++11 on windows | 21 October 2016, 16:41:00 UTC |
| 40db831 | Jay Hesselberth | 21 October 2016, 15:00:10 UTC | fix gcc warnings | 21 October 2016, 15:00:10 UTC |
| 0d88de8 | Jay Hesselberth | 21 October 2016, 14:32:38 UTC | add gcc to appveyor build matrix | 21 October 2016, 14:32:38 UTC |
| e578ac9 | Jay Hesselberth | 21 October 2016, 11:51:45 UTC | bump version | 21 October 2016, 11:51:45 UTC |
| f133dde | Jay Hesselberth | 21 October 2016, 11:47:22 UTC | prep release | 21 October 2016, 11:47:22 UTC |
| 299a526 | Jay Hesselberth | 21 October 2016, 11:40:55 UTC | not on CRAN :( | 21 October 2016, 11:40:55 UTC |
| 97032dc | Jay Hesselberth | 21 October 2016, 02:25:03 UTC | not on CRAN yet :( | 21 October 2016, 02:25:03 UTC |
| 5fbae31 | Jay Hesselberth | 20 October 2016, 23:33:25 UTC | add flag to ignore dplyr warnings | 20 October 2016, 23:33:25 UTC |
| 4d0f485 | Jay Hesselberth | 20 October 2016, 23:28:18 UTC | remove unused last_start (gcc warning) | 20 October 2016, 23:28:18 UTC |
| 1e30b2a | Jay Hesselberth | 20 October 2016, 21:57:32 UTC | update bedr URLs in pkgdown | 20 October 2016, 21:57:32 UTC |
| cf52da5 | Jay Hesselberth | 20 October 2016, 21:31:25 UTC | add mingw_32 to appveyor matrix | 20 October 2016, 21:31:25 UTC |
| 0571d6e | Jay Hesselberth | 20 October 2016, 20:56:23 UTC | updates for cran resubmission | 20 October 2016, 20:56:23 UTC |
| 678c66e | Jay Hesselberth | 20 October 2016, 16:23:49 UTC | update pkgdown after reorg | 20 October 2016, 16:23:49 UTC |
| 05de543 | Jay Hesselberth | 20 October 2016, 16:22:52 UTC | reorg vignette content | 20 October 2016, 16:22:52 UTC |
| ec5d699 | Jay Hesselberth | 20 October 2016, 14:42:37 UTC | simplify README - remove unused img | 20 October 2016, 14:42:37 UTC |
