| fc51d93 | Raphael Vallat | 27 August 2022, 01:21:03 UTC | Release v0.6.2 (#92) * Update version * Build doc | 27 August 2022, 01:21:03 UTC |
| 5d1ff92 | Raphael Vallat | 03 August 2022, 01:00:54 UTC | Add EEG-HRV coupling notebook (#89) * Added EEG-HRV coupling notebook * Minor updates | 03 August 2022, 01:00:54 UTC |
| b3f153f | Matias Andina | 19 July 2022, 22:24:52 UTC | adding vmax vmin functionality with minimal tests #73 (#75) * adding vmax vmin functionality with minimal tests #73 * Black formatting * Update changelog + unit tests Co-authored-by: Raphael Vallat <raphaelvallat9@gmail.com> | 19 July 2022, 22:24:52 UTC |
| 65f033f | Raphael Vallat | 19 July 2022, 22:23:28 UTC | Functions to compare agreement of events detections (#71) * Initial commit of the compare_detection function * Add unit test for compare_detection + docstring * Add compare_channels and compare_detection methods * Add "Channel" as index name * Add unit tests for compare_detection and compare_channels * Updated changelog * Added methods in spindles notebook * Black formatting * Fix unit test | 19 July 2022, 22:23:28 UTC |
| b1890be | Raphael Vallat | 08 July 2022, 22:50:31 UTC | Better handling of flat data in numba function and spindles detect (#86) | 08 July 2022, 22:50:31 UTC |
| a281d55 | Raphael Vallat | 20 June 2022, 17:34:42 UTC | Black formatting (#83) * Use black code formatting + GH Actions * Reformat setup and conf | 20 June 2022, 17:34:42 UTC |
| 4d87b5c | Raphael Vallat | 20 June 2022, 17:28:00 UTC | Add conda install instructions (#76) | 20 June 2022, 17:28:00 UTC |
| 5e65ed5 | Raphael Vallat | 03 June 2022, 20:59:18 UTC | Updated changelog | 03 June 2022, 20:59:18 UTC |
| a192252 | Raphael Vallat | 03 June 2022, 20:55:51 UTC | Use MNE for conversion Volts to uV (#70) * Bump MNE to 0.23 raw.get_data(units="uV") * use units="uV" in raw.get_data() instead of multiplication by 1e6 * Use a dict for units to handle multiple types in raw * Fix residual "multiply by 1e6" | 03 June 2022, 20:55:51 UTC |
| 34e40b6 | Raphael Vallat | 03 June 2022, 19:09:38 UTC | Add two new functions: a) find periods in hypnogram and b) heart rate by stage (#68) * Added hypno_find_periods * Updated api + docstrings * Add ECG dataset * Add sleepecg to requirements * Add is_sleepecg_installed * Add hrv stage function * Add unit tests * Update changelog and API * Fix typo in changelog * Fix windows unit tests? * Force dtype to int32 * Force int64? * do not check dtype * Add support for str dtype in hypno_find_periods * Implemented @remrama changes * Handle sf = array(...) | 03 June 2022, 19:09:38 UTC |
| 71c0a82 | Raphael Vallat | 15 March 2022, 16:59:45 UTC | Switch to 0.6.1 | 15 March 2022, 16:59:45 UTC |
| d1cb4aa | Raphael Vallat | 15 March 2022, 16:49:31 UTC | CRITICAL: FIX FOR SPINDLES DETECTION! (#55) * CRITICAL: FIX FOR SPINDLES DETECTION! * Updated no.convolve in notebook * Removed notebook * Updated changelog | 15 March 2022, 16:49:31 UTC |
| 2383628 | Raphael Vallat | 20 February 2022, 22:22:33 UTC | Update notebooks | 20 February 2022, 22:22:33 UTC |
| 4cb74b0 | Raphael Vallat | 20 February 2022, 18:10:24 UTC | Reference to quickstart in doc | 20 February 2022, 18:10:24 UTC |
| fa6ca6e | Raphael Vallat | 20 February 2022, 18:07:12 UTC | Use pd.concat instead of frame.append | 20 February 2022, 18:07:12 UTC |
| 021e306 | Raphael Vallat | 20 February 2022, 18:03:33 UTC | Remove python version badge from readme | 20 February 2022, 18:03:33 UTC |
| 11bb22a | Raphael Vallat | 20 February 2022, 17:51:44 UTC | Remove Travis CI and add cov to GH Actions | 20 February 2022, 17:51:44 UTC |
| 828fdd7 | Raphael Vallat | 20 February 2022, 17:45:00 UTC | Remove Python 3.6 from CI test | 20 February 2022, 17:45:00 UTC |
| 357dd2b | Raphael Vallat | 20 February 2022, 17:39:22 UTC | Updated docs | 20 February 2022, 17:39:22 UTC |
| 2b3c03b | Raphael Vallat | 20 February 2022, 17:33:18 UTC | Minor fix in quickstart | 20 February 2022, 17:33:18 UTC |
| ac883f0 | Raphael Vallat | 20 February 2022, 17:29:40 UTC | Updated version number 0.6.0 | 20 February 2022, 17:29:40 UTC |
| a467ffa | Raphael Vallat | 20 February 2022, 17:29:31 UTC | Updated changelog | 20 February 2022, 17:29:31 UTC |
| daaffc9 | Raphael Vallat | 29 December 2021, 01:17:47 UTC | Merge branch 'master' into develop | 29 December 2021, 01:17:47 UTC |
| 6b2762f | Raphael Vallat | 29 December 2021, 01:16:56 UTC | Merge pull request #51 from snwnde/enh [ENH] Speed up `_index_to_events` | 29 December 2021, 01:16:56 UTC |
| 3338a31 | Senwen Deng | 24 December 2021, 09:29:26 UTC | speed up `_index_to_events` #50 | 24 December 2021, 09:29:26 UTC |
| 187841e | Raphael Vallat | 02 November 2021, 04:28:38 UTC | Finished first full draft of quickstart | 02 November 2021, 04:28:38 UTC |
| 88baf30 | Raphael Vallat | 30 October 2021, 00:59:05 UTC | ndPAC is now calculated including unreliable events + no propcoupled column | 30 October 2021, 00:59:05 UTC |
| 4b9764f | Raphael Vallat | 30 October 2021, 00:43:55 UTC | Added more unit test for sw_detection | 30 October 2021, 00:43:55 UTC |
| 6dadbbc | Raphael Vallat | 29 October 2021, 23:52:46 UTC | Use np.float64 instead of np.float | 29 October 2021, 23:52:46 UTC |
| b3df180 | Raphael Vallat | 29 October 2021, 23:50:26 UTC | Add verbose parameter to hypno_upsample_to_data | 29 October 2021, 23:50:26 UTC |
| d203a62 | Raphael Vallat | 29 October 2021, 23:33:29 UTC | flake8 + attempt to fix tests | 29 October 2021, 23:33:29 UTC |
| 7158805 | Raphael Vallat | 29 October 2021, 22:58:03 UTC | Added coupling_params to sw_detect + updated notebook | 29 October 2021, 22:58:03 UTC |
| 6aa4ecf | Raphael Vallat | 29 October 2021, 22:32:28 UTC | Added plot_hypnogram to API | 29 October 2021, 22:32:28 UTC |
| bb822ef | Raphael Vallat | 29 October 2021, 22:28:53 UTC | Updated SW threshold in step-by-step notebook | 29 October 2021, 22:28:53 UTC |
| 1a41072 | Raphael Vallat | 29 October 2021, 22:21:38 UTC | Added references to eLife | 29 October 2021, 22:21:38 UTC |
| 4ac0111 | Raphael Vallat | 29 October 2021, 22:00:21 UTC | Clean conf.py file | 29 October 2021, 22:00:21 UTC |
| 10296fc | Raphael Vallat | 29 October 2021, 21:58:07 UTC | Added IRASA PR to changelog | 29 October 2021, 21:58:07 UTC |
| 0a4bec3 | Raphael Vallat | 29 October 2021, 21:55:19 UTC | Merge branch 'master' into develop | 29 October 2021, 21:55:19 UTC |
| bd9f9ab | Raphael Vallat | 29 October 2021, 21:53:00 UTC | More conservative amplitude thresholds in sw_detect | 29 October 2021, 21:53:00 UTC |
| ceb71d8 | Raphael Vallat | 29 October 2021, 18:20:05 UTC | SO-sigma coupling major changes * Use ± 1 sec around negative peak * Report thresholded ndPAC (unreliable set to zero) * Report ndPAC of supzero events + proportion of coupled events when using summary | 29 October 2021, 18:20:05 UTC |
| 68d96fb | Raphael Vallat | 29 October 2021, 16:59:43 UTC | Started working on quickstart | 29 October 2021, 16:59:43 UTC |
| 1f83229 | Raphael Vallat | 26 October 2021, 15:03:03 UTC | Merge pull request #42 from moritz-gerster/IRASA_fix Inform user about resampled fitting range | 26 October 2021, 15:03:03 UTC |
| dee6432 | Moritz | 25 October 2021, 06:44:55 UTC | Change highpass/lowpass default behavior | 25 October 2021, 06:44:55 UTC |
| e3290fc | Moritz | 23 October 2021, 08:11:28 UTC | Check if highpass and lowpass is known | 23 October 2021, 08:11:28 UTC |
| 4a54716 | Moritz | 23 October 2021, 08:07:56 UTC | Import and include set_log_level | 23 October 2021, 08:07:56 UTC |
| fd18db2 | Moritz | 23 October 2021, 08:03:35 UTC | Add verbose in doc string | 23 October 2021, 08:03:35 UTC |
| 7684c8d | Moritz | 19 October 2021, 07:00:57 UTC | Modify warning messages | 19 October 2021, 07:00:57 UTC |
| f049fc3 | Moritz | 18 October 2021, 15:39:54 UTC | Add reference | 18 October 2021, 15:39:54 UTC |
| bc67c47 | Moritz | 18 October 2021, 15:20:06 UTC | Inform user about evaluated frequency ranges | 18 October 2021, 15:20:06 UTC |
| 70def16 | Moritz | 18 October 2021, 15:17:49 UTC | Retract last commit | 18 October 2021, 15:17:49 UTC |
| de5ffc8 | Moritz | 18 October 2021, 13:06:12 UTC | Exchange natural logarithm with logarithm base 10 | 18 October 2021, 13:06:12 UTC |
| f6f3285 | Raphael Vallat | 05 September 2021, 01:52:55 UTC | "From Stage" as index name in yasa.transition_matrix | 05 September 2021, 01:52:55 UTC |
| 4b99fff | Raphael Vallat | 05 September 2021, 01:52:34 UTC | yasa.topoplot is now case-insensitive for channel names | 05 September 2021, 01:52:34 UTC |
| a7e2f75 | Raphael Vallat | 25 August 2021, 21:42:03 UTC | Updated API and changelog | 25 August 2021, 21:42:03 UTC |
| ce78806 | Raphael Vallat | 23 August 2021, 18:42:43 UTC | Added plot_hypnogram function | 23 August 2021, 18:42:43 UTC |
| af346bf | Raphael Vallat | 23 August 2021, 17:38:35 UTC | Removed modulation index from sw_detect | 23 August 2021, 17:38:35 UTC |
| 79b5871 | Raphael Vallat | 22 August 2021, 00:29:07 UTC | Add as_dataframe parameter in get_sync_events | 22 August 2021, 00:29:07 UTC |
| 30df6ed | Raphael Vallat | 21 August 2021, 23:26:26 UTC | Added mask=None in detection methods (slow-waves, spindles and REM) | 21 August 2021, 23:26:26 UTC |
| fa5e6c0 | Raphael Vallat | 21 August 2021, 22:08:37 UTC | Add find_cooccurring_spindles and modulation index to yasa.sw_detect | 21 August 2021, 22:08:37 UTC |
| 4d23501 | Raphael Vallat | 18 August 2021, 03:37:20 UTC | Switch to 0.5.1 and added trained classifier to manifest | 18 August 2021, 03:37:20 UTC |
| f5d6afa | Raphael Vallat | 11 August 2021, 22:44:34 UTC | Upload doc 0.5.0 | 11 August 2021, 22:44:34 UTC |
| 7e816e3 | Raphael Vallat | 11 August 2021, 22:00:28 UTC | Re-run all notebooks | 11 August 2021, 22:00:28 UTC |
| 168e035 | Raphael Vallat | 11 August 2021, 22:00:06 UTC | Major: add classifier for YASA 0.5.0 | 11 August 2021, 22:00:06 UTC |
| c6ba8b4 | Raphael Vallat | 09 August 2021, 18:59:01 UTC | Minor improvements in general doc + updated dependency + flake8 100 lines | 09 August 2021, 18:59:01 UTC |
| 24edc66 | Raphael Vallat | 09 August 2021, 18:44:29 UTC | Change version in setup and init to 0.5.0 | 09 August 2021, 18:44:29 UTC |
| c88ddee | Raphael Vallat | 09 August 2021, 18:42:09 UTC | Updated the size of the rolling windows in SleepStaging | 09 August 2021, 18:42:09 UTC |
| c0deb5b | Raphael Vallat | 09 July 2021, 16:52:54 UTC | Updated notebook artefact rejection | 09 July 2021, 16:52:54 UTC |
| aafcd97 | Raphael Vallat | 09 July 2021, 00:05:14 UTC | Updated requirements pyRiemann 0.2.7 (no restriction on sklearn) | 09 July 2021, 00:05:14 UTC |
| fdf16a3 | Raphael Vallat | 02 July 2021, 18:21:53 UTC | Fix rolling window length in doc SleepStaging | 02 July 2021, 18:21:53 UTC |
| 2b8c262 | Raphael Vallat | 02 July 2021, 18:19:06 UTC | Add example phase and amplitude signal to notebook | 02 July 2021, 18:19:06 UTC |
| 592f8ff | Raphael Vallat | 22 June 2021, 23:51:47 UTC | BUGFIX: Slow-waves duration must be < max(dur_pos) + max(dur_neg) | 22 June 2021, 23:51:47 UTC |
| 4d0c540 | Raphael Vallat | 22 June 2021, 22:52:35 UTC | Add debug notebooks to gitignore | 22 June 2021, 22:52:35 UTC |
| 845622e | Raphael Vallat | 22 June 2021, 22:40:05 UTC | Remove flat electrode in compute_feature_stage + avoid in-place modification + add argument to disable slow 1/f | 22 June 2021, 22:40:05 UTC |
| e954401 | Raphael Vallat | 18 June 2021, 17:12:27 UTC | Added coincidence matrix | 18 June 2021, 17:12:27 UTC |
| 9dca492 | Raphael Vallat | 05 May 2021, 19:49:16 UTC | Sleep staging always get the sampling frequency from Raw object | 05 May 2021, 19:49:16 UTC |
| 4a9f8ed | Raphael Vallat | 15 April 2021, 23:16:09 UTC | Use 2D antropy function in SleepStaging | 15 April 2021, 23:16:09 UTC |
| 571a2c0 | Raphael Vallat | 06 April 2021, 00:31:44 UTC | Spindles should be merged as well | 06 April 2021, 00:31:44 UTC |
| 27e4b9b | Raphael Vallat | 02 April 2021, 23:04:54 UTC | Better doc in transition_matrix | 02 April 2021, 23:04:54 UTC |
| 5e61b92 | Raphael Vallat | 02 April 2021, 21:51:32 UTC | TST now excludes Art and Unscored | 02 April 2021, 21:51:32 UTC |
| ba558c7 | Raphael Vallat | 01 April 2021, 23:17:49 UTC | Enable spindles detection + add spectral entropy and Higuchi of the filtered delta signal | 01 April 2021, 23:17:49 UTC |
| 30d2501 | Raphael Vallat | 23 March 2021, 21:39:30 UTC | Prepare switch to 0.4.1 | 23 March 2021, 21:39:30 UTC |
| 65fd9f5 | Raphael Vallat | 23 March 2021, 20:21:49 UTC | Add outdated to dependency | 23 March 2021, 20:21:49 UTC |
| e4f8d6c | Raphael Vallat | 22 March 2021, 22:22:45 UTC | Add support for N2+N3+REM (WN) in features.py | 22 March 2021, 22:22:45 UTC |
| c6d17b3 | Raphael Vallat | 20 March 2021, 04:54:50 UTC | Added notebook for topoplot | 20 March 2021, 04:54:50 UTC |
| 98b4683 | Raphael Vallat | 18 March 2021, 22:26:42 UTC | Temporarily disabled spindles from compute_feature_stage | 18 March 2021, 22:26:42 UTC |
| 1ea4a64 | Raphael Vallat | 17 March 2021, 21:54:31 UTC | Use antropy instead of entropy | 17 March 2021, 21:54:31 UTC |
| f1c4bd4 | Raphael Vallat | 16 March 2021, 00:47:25 UTC | Better stage mapping in compute_features | 16 March 2021, 00:47:25 UTC |
| 7ab92fb | Raphael Vallat | 13 March 2021, 01:52:48 UTC | Now added the traditional frequency bands in compute_stage_feature | 13 March 2021, 01:52:48 UTC |
| e0da900 | Raphael Vallat | 12 March 2021, 01:30:00 UTC | Fix cropped topoplot! | 12 March 2021, 01:30:00 UTC |
| 3bc8a38 | Raphael Vallat | 12 March 2021, 01:23:46 UTC | First working implementation of topoplot Bug: the topoplot image is cropped by Sphinx... | 12 March 2021, 01:23:46 UTC |
| 8707694 | Raphael Vallat | 11 March 2021, 23:39:42 UTC | Add compute_features_stage | 11 March 2021, 23:39:42 UTC |
| 2b8c886 | Raphael Vallat | 11 March 2021, 18:25:54 UTC | Disabled GitHub actions test for MacOs (fails with lightgbm) | 11 March 2021, 18:25:54 UTC |
| b0062f2 | Raphael Vallat | 11 March 2021, 02:35:21 UTC | No need to upload new classifiers at each new version of YASA | 11 March 2021, 02:35:21 UTC |
| b0251d3 | Raphael Vallat | 02 March 2021, 00:14:23 UTC | Add warning if PSD contains negative values | 02 March 2021, 00:14:23 UTC |
| 339172e | Raphael Vallat | 01 March 2021, 23:33:32 UTC | Renamed main.py --> detection.py | 01 March 2021, 23:33:32 UTC |
| 22ae7c6 | Raphael Vallat | 01 March 2021, 23:22:51 UTC | Add link to yasa_classifier in doc | 01 March 2021, 23:22:51 UTC |
| 0c9fbdb | Raphael Vallat | 01 March 2021, 23:13:58 UTC | Default freq_sw in sw_detect is now 0.3 to 1.5 Hz | 01 March 2021, 23:13:58 UTC |
| be7fd6d | Raphael Vallat | 01 March 2021, 23:10:05 UTC | Use nanstd in trimbothstd | 01 March 2021, 23:10:05 UTC |
| 9d43192 | Raphael Vallat | 24 February 2021, 00:47:32 UTC | Fixed typo in is_pyriemann_installed (+ added pyRiemann Potato as a gitignore file) | 24 February 2021, 00:47:32 UTC |
| 3aba802 | Raphael Vallat | 25 January 2021, 05:56:50 UTC | Remove commented function and format docstring example | 25 January 2021, 05:56:50 UTC |
