| 7fcec03 | Sasha | 07 March 2016, 01:25:02 UTC | Beast 2.4 update for new parameterization | 07 March 2016, 01:25:02 UTC |
| a7cec62 | Sasha | 07 March 2016, 01:15:41 UTC | merge with update for beast 2.4 | 07 March 2016, 01:15:41 UTC |
| f3c2437 | Sasha | 07 March 2016, 01:01:02 UTC | pre 1.1.4 | 07 March 2016, 01:01:02 UTC |
| 2e0fe67 | Sasha | 07 March 2016, 00:45:34 UTC | Beast 2.4 update | 07 March 2016, 00:45:34 UTC |
| ed69b8e | Remco Bouckaert | 05 January 2016, 23:44:02 UTC | sync with beast2 | 05 January 2016, 23:44:23 UTC |
| 14d09a2 | Alexei Drummond | 07 September 2015, 13:05:54 UTC | Added a flexible abstract parameterization class for a new ParameterizedSABirthDeathModel and three alternative parameterizations. | 07 September 2015, 13:05:54 UTC |
| 05717ab | Alexei Drummond | 07 September 2015, 10:00:40 UTC | Added alternative parameterization for origin but the expected number of species at the present. | 07 September 2015, 10:00:40 UTC |
| 477b10f | Sasha | 22 June 2015, 00:58:25 UTC | full to extant converter | 22 June 2015, 00:58:25 UTC |
| ded859b | Sasha | 26 May 2015, 23:44:29 UTC | version update | 26 May 2015, 23:44:29 UTC |
| b755138 | Sasha | 14 May 2015, 02:33:59 UTC | SA probability | 14 May 2015, 02:33:59 UTC |
| 1ab6ce2 | Sasha | 14 May 2015, 02:28:21 UTC | Binary operator | 14 May 2015, 02:28:21 UTC |
| 5f6633a | Sasha | 28 April 2015, 21:56:28 UTC | Exception for origin<root | 28 April 2015, 21:56:28 UTC |
| 781f6ed | Sasha | 09 April 2015, 21:27:15 UTC | remove disconnect operators from template | 09 April 2015, 21:27:15 UTC |
| c2fff30 | Sasha | 05 March 2015, 21:54:21 UTC | Merge branch 'master' of https://github.com/CompEvol/sampled-ancestors | 05 March 2015, 21:54:21 UTC |
| cc1eea3 | Sasha | 05 March 2015, 21:46:43 UTC | minor beauti fixes | 05 March 2015, 21:46:43 UTC |
| ae6201c | Remco Bouckaert | 05 March 2015, 04:58:18 UTC | add SATreeToBinaryTreeConverter | 05 March 2015, 04:59:22 UTC |
| acd49b9 | Sasha | 27 February 2015, 00:21:13 UTC | tutorial | 27 February 2015, 00:21:13 UTC |
| 246ea2f | Sasha | 27 February 2015, 00:18:53 UTC | Merge remote-tracking branch 'origin/master' Conflicts: doc/FBDDatingTutorial/tutorial.pdf doc/FBDDatingTutorial/tutorial.tex | 27 February 2015, 00:18:53 UTC |
| 76d797d | Sasha | 27 February 2015, 00:12:40 UTC | lambda greater than mu condition | 27 February 2015, 00:12:40 UTC |
| b7fa0a0 | Sasha | 29 January 2015, 07:51:45 UTC | remove fossils | 29 January 2015, 07:51:45 UTC |
| ea91340 | Sasha | 28 January 2015, 03:09:52 UTC | zb to sa convertor | 28 January 2015, 03:09:52 UTC |
| d86290f | Sasha | 28 January 2015, 01:37:46 UTC | images in tutorial | 28 January 2015, 01:37:46 UTC |
| b9ae42d | Sasha | 28 January 2015, 00:47:18 UTC | divergence time processor | 28 January 2015, 00:47:18 UTC |
| 37f74bd | Sasha | 23 January 2015, 03:11:27 UTC | Tutorial update | 23 January 2015, 03:11:27 UTC |
| 3bf67a4 | Sasha | 23 January 2015, 01:17:16 UTC | Tutorial | 23 January 2015, 01:17:16 UTC |
| c57e673 | Sasha | 20 January 2015, 21:50:16 UTC | bears xml examples | 20 January 2015, 21:50:16 UTC |
| ddcc6ea | Sasha | 20 January 2015, 03:33:40 UTC | nexus example | 20 January 2015, 03:33:40 UTC |
| c6752de | Sasha | 20 January 2015, 03:09:25 UTC | version change | 20 January 2015, 03:09:25 UTC |
| 016385d | Sasha | 20 January 2015, 03:04:00 UTC | 2.2 pre-release | 20 January 2015, 03:04:00 UTC |
| 8bce712 | Sasha | 14 January 2015, 03:37:25 UTC | more on simulators | 14 January 2015, 03:37:25 UTC |
| 8270177 | Sasha | 14 January 2015, 01:28:32 UTC | simulators | 14 January 2015, 01:28:32 UTC |
| 999f695 | Sasha | 11 January 2015, 20:39:29 UTC | SABirthDeathModel | 11 January 2015, 20:39:29 UTC |
| ee613fc | Sasha | 16 December 2014, 23:17:24 UTC | citation | 16 December 2014, 23:17:24 UTC |
| 88ab3ba | Sasha | 01 December 2014, 02:20:54 UTC | remove templates and snDateRandomWalker clean up | 01 December 2014, 02:20:54 UTC |
| afa7af8 | Sasha | 20 November 2014, 00:42:51 UTC | MergedSkyline.xml removed | 20 November 2014, 00:42:51 UTC |
| aa35da4 | Sasha | 20 November 2014, 00:41:56 UTC | Simplified code in Scale for root | 20 November 2014, 00:41:56 UTC |
| 0b29afa | Sasha | 14 November 2014, 02:58:04 UTC | print temp result fix | 14 November 2014, 02:58:04 UTC |
| bdf7b5d | Sasha | 13 November 2014, 22:54:55 UTC | operators which work with Tree instead ZBSATrees | 13 November 2014, 22:54:55 UTC |
| 63f8455 | Sasha | 13 November 2014, 00:54:48 UTC | lambda greater than mu | 13 November 2014, 00:54:48 UTC |
| 26b3c15 | Sasha | 25 October 2014, 04:56:51 UTC | numerical overflow in 2^n fixed | 25 October 2014, 04:56:51 UTC |
| d89949b | Sasha | 31 August 2014, 23:40:37 UTC | operator file rename | 31 August 2014, 23:40:37 UTC |
| 5e4de27 | Sasha | 27 August 2014, 22:17:58 UTC | scaling fixes (scale sampled nodes is fixed and is_dirty for child nodes is set) | 27 August 2014, 22:17:58 UTC |
| 4dba906 | Sasha | 24 August 2014, 23:21:46 UTC | refactoring in Beauti templates | 24 August 2014, 23:21:46 UTC |
| ef8100f | Sasha | 21 August 2014, 23:33:44 UTC | Fake to ZeroBranch in SA template | 21 August 2014, 23:33:44 UTC |
| d2aa3d4 | Sasha | 21 August 2014, 05:09:24 UTC | remove SA from non-tree-related parameters in template | 21 August 2014, 05:09:24 UTC |
| 7306ce8 | Sasha | 15 August 2014, 05:11:09 UTC | sampling dates example to fossil.xml | 15 August 2014, 05:11:09 UTC |
| 87cb813 | Sasha | 06 August 2014, 22:25:17 UTC | test with traits | 06 August 2014, 22:25:17 UTC |
| 7d8989c | walterxie | 05 August 2014, 04:12:30 UTC | update | 05 August 2014, 04:12:30 UTC |
| 71acb57 | walterxie | 05 August 2014, 04:07:45 UTC | Merge remote-tracking branch 'origin/master' Conflicts: src/beast/evolution/tree/ZeroBranchSARandomTree.java | 05 August 2014, 04:07:45 UTC |
| 669cc9e | walterxie | 05 August 2014, 04:03:05 UTC | add function to print topology in core and complete Unit test for Sasha's SA Random starting tree. | 05 August 2014, 04:03:05 UTC |
| 317ad99 | Sasha | 05 August 2014, 01:55:38 UTC | height is greater than origin error message issue fixed | 05 August 2014, 01:55:38 UTC |
| 85fa5c4 | Sasha | 04 August 2014, 22:42:04 UTC | example files | 04 August 2014, 22:42:04 UTC |
| 46285c4 | Sasha | 04 August 2014, 02:11:15 UTC | Reversible-jump relaxed clock | 04 August 2014, 02:11:15 UTC |
| 82d5c50 | Sasha | 29 July 2014, 02:56:58 UTC | clean up | 29 July 2014, 02:56:58 UTC |
| 56f785e | walterxie | 29 July 2014, 00:34:19 UTC | move analyze method out from constructor, so that inheritance would not be affected. And complete new SATreeTraceAnalysis. | 29 July 2014, 00:34:19 UTC |
| 67de6cb | walterxie | 28 July 2014, 05:53:47 UTC | extend TreeTraceAnalysis to deal with Sampled Ancestor Trees (not complete) | 28 July 2014, 05:53:47 UTC |
| 9a7774c | walterxie | 28 July 2014, 01:42:01 UTC | Merge remote-tracking branch 'origin/master' Conflicts: src/beast/app/tools/SampledAncestorTreeAnalysis.java | 28 July 2014, 01:42:01 UTC |
| 695a9ff | walterxie | 28 July 2014, 01:35:42 UTC | test | 28 July 2014, 01:35:42 UTC |
| bd627b0 | Sasha | 28 July 2014, 00:47:05 UTC | Tree Analysis clean up | 28 July 2014, 00:47:05 UTC |
| d4ac48c | Sasha | 27 July 2014, 23:45:09 UTC | Random tree with constraints and sampling dates with bounds | 27 July 2014, 23:45:09 UTC |
| 8701127 | Sasha | 02 July 2014, 05:28:21 UTC | fossil example | 02 July 2014, 05:28:21 UTC |
| 1d6b7de | Sasha | 02 July 2014, 03:03:27 UTC | relaxed intermediate | 02 July 2014, 03:03:27 UTC |
| aee8dc4 | Sasha | 21 June 2014, 04:01:44 UTC | Skyline for many rhos and tests for Skyline | 21 June 2014, 04:01:44 UTC |
| 8297a0d | Sasha | 20 June 2014, 03:10:52 UTC | skyline without rho | 20 June 2014, 03:10:52 UTC |
| 72d69ee | Sasha | 20 June 2014, 00:36:51 UTC | Merge branch 'master' of https://github.com/gavryushkina/sampled-ancestor | 20 June 2014, 00:36:51 UTC |
| e732ffe | Alexandra Gavryushkina | 20 June 2014, 00:36:29 UTC | Update README.md | 20 June 2014, 00:36:29 UTC |
| ef5c3d9 | Alexandra Gavryushkina | 20 June 2014, 00:31:33 UTC | Create README.md | 20 June 2014, 00:31:33 UTC |
| f68fb9c | Sasha | 19 June 2014, 01:08:50 UTC | Beast Interface to Random Tree several rho sampling intervals to Skyline + tests | 19 June 2014, 01:08:50 UTC |
| 59363f7 | Alexandra Gavryushkina | 09 June 2014, 05:21:36 UTC | tree analysis | 09 June 2014, 05:21:36 UTC |
| 572f424 | Alexandra Gavryushkina | 12 May 2014, 04:42:04 UTC | logger | 12 May 2014, 04:42:04 UTC |
| e77fd95 | Alexandra Gavryushkina | 29 April 2014, 04:09:10 UTC | refactoring | 29 April 2014, 04:09:10 UTC |
| f467ec3 | Alexandra Gavryushkina | 19 April 2014, 03:11:45 UTC | transform changed for Skyline | 19 April 2014, 03:11:45 UTC |
| 760e978 | Alexandra Gavryushkina | 17 April 2014, 05:36:49 UTC | conditioning on root | 17 April 2014, 05:36:49 UTC |
| 62d51f8 | Alexandra Gavryushkina | 08 April 2014, 05:09:38 UTC | conditioning on root | 08 April 2014, 05:09:38 UTC |
| abe7ffa | Alexandra Gavryushkina | 07 April 2014, 04:58:41 UTC | clade constraint | 07 April 2014, 04:58:41 UTC |
| 80619d5 | Alexandra Gavryushkina | 07 April 2014, 04:56:21 UTC | clade constraint | 07 April 2014, 04:56:21 UTC |
| 9e25737 | Alexandra Gavryushkina | 07 April 2014, 04:53:55 UTC | clade constraint | 07 April 2014, 04:53:55 UTC |
| 7c79e41 | Alexandra Gavryushkina | 07 April 2014, 00:37:36 UTC | conditioning on root | 07 April 2014, 00:37:36 UTC |
| 5911ef3 | Alexandra Gavryushkina | 03 April 2014, 03:53:11 UTC | conditioning on root | 03 April 2014, 03:53:11 UTC |
| 602f192 | Alexandra Gavryushkina | 26 March 2014, 03:16:39 UTC | is dirty | 26 March 2014, 03:16:39 UTC |
| 9e0687a | Denise Kühnert | 25 March 2014, 08:58:21 UTC | removed intervalNumber input (is now uniquely defined through dimension of parameters) | 25 March 2014, 08:58:21 UTC |
| 06f7c03 | Alexandra Gavryushkina | 11 March 2014, 21:54:06 UTC | tree analyser | 11 March 2014, 21:54:06 UTC |
| be042c7 | Alexandra Gavryushkina | 11 March 2014, 08:50:17 UTC | r_i to skyline | 11 March 2014, 08:50:17 UTC |
| ebc784b | Alexandra Gavryushkina | 03 March 2014, 08:43:07 UTC | r_i added | 03 March 2014, 08:43:07 UTC |
| 3d028c4 | Alexandra Gavryushkina | 24 February 2014, 01:48:46 UTC | conditioning on root | 24 February 2014, 01:48:46 UTC |
| 1cedd7e | Alexandra Gavryushkina | 23 February 2014, 10:18:34 UTC | clade constraint | 23 February 2014, 10:18:34 UTC |
| aae9a3d | Alexandra Gavryushkina | 21 February 2014, 04:29:59 UTC | first branching event instead of root | 21 February 2014, 04:29:59 UTC |
| a8a0145 | Alexandra Gavryushkina | 20 February 2014, 04:54:13 UTC | checking if origin is greater than root height | 20 February 2014, 04:54:13 UTC |
| 0eb7107 | Alexandra Gavryushkina | 19 February 2014, 05:07:50 UTC | condition on root | 19 February 2014, 05:07:50 UTC |
| 89ea1af | Alexandra Gavryushkina | 17 February 2014, 23:23:49 UTC | scaling operators | 17 February 2014, 23:23:49 UTC |
| 3d5ed11 | Alexandra Gavryushkina | 01 February 2014, 06:31:09 UTC | clade constraint | 01 February 2014, 06:31:09 UTC |
| 0840098 | Alexandra Gavryushkina | 31 January 2014, 22:20:40 UTC | condition on the root input | 31 January 2014, 22:20:40 UTC |
| 5d80844 | Alexandra Gavryushkina | 31 January 2014, 05:14:16 UTC | simula | 31 January 2014, 05:14:16 UTC |
| 00b09cd | Alexandra Gavryushkina | 31 January 2014, 02:55:13 UTC | mrca logger | 31 January 2014, 02:55:13 UTC |
| e3d08f7 | Alexandra Gavryushkina | 30 January 2014, 03:11:38 UTC | simulations | 30 January 2014, 03:11:38 UTC |
| f0b6e44 | Alexandra Gavryushkina | 29 January 2014, 03:45:01 UTC | 2n skyline | 29 January 2014, 03:45:01 UTC |
| 9dc8ba0 | Alexandra Gavryushkina | 29 January 2014, 01:15:27 UTC | FBD stand along | 29 January 2014, 01:15:27 UTC |
| 34b1ebe | Alexandra Gavryushkina | 28 January 2014, 18:30:47 UTC | fbd | 28 January 2014, 18:30:47 UTC |
| 4456fae | Alexandra Gavryushkina | 28 January 2014, 01:14:12 UTC | 2^(n-m-1) added | 28 January 2014, 01:14:12 UTC |
| ee85213 | Alexandra Gavryushkina | 27 January 2014, 22:01:02 UTC | 2^(n-m-1) added | 27 January 2014, 22:01:02 UTC |
