https://github.com/GPflow/GPflow

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Revision Author Date Message Commit Date
6bf7110 Merge pull request #1871 from GPflow/develop Release 2.5.1 28 April 2022, 12:01:21 UTC
d3a4819 Fix bug in release process. (#1870) 28 April 2022, 11:03:19 UTC
10cfc31 Merge pull request #1869 from GPflow/develop Release 2.5.0 28 April 2022, 10:25:21 UTC
3154445 Prepare for release 2.5.0. (#1868) 28 April 2022, 08:56:56 UTC
d30fd28 Iterate on check_shapes documentation. (#1865) 27 April 2022, 14:14:17 UTC
672f8e2 Fix problems with different versions of Python and Numpy. (#1859) 25 April 2022, 13:26:20 UTC
6203bad Make check_shapes play well with tf's custom code inspection. (#1860) 25 April 2022, 09:44:46 UTC
1a77914 Add test of documentation warnings. (#1857) 21 April 2022, 10:04:45 UTC
d090f64 Support checking all elements of collections. (#1840) 21 April 2022, 09:32:45 UTC
aa9f042 Fix doc warnings. (#1856) 12 April 2022, 12:58:17 UTC
feb6fe7 Add conditional shapes. (#1855) 12 April 2022, 12:32:10 UTC
8e64ed0 Add unit tests where batch dimensions have different length. (#1852) 11 April 2022, 09:22:07 UTC
3f74b5c Remove positive transform for anisotropic lengthscales in higher dims (#1843) * Remove positive transform for anisotropic lengthscales in higher dims * Add cosine to ard tests 08 April 2022, 14:35:58 UTC
41fc73c Simplify parsing of argument references. (#1854) 07 April 2022, 14:57:32 UTC
a22aab9 Add support for checking the shapes of intermediate computations. (#1853) 07 April 2022, 14:17:13 UTC
422ca25 Generate good error message if a variable is used in both a rank-1 and variable-rank context. (#1851) 07 April 2022, 09:18:44 UTC
d24c3de Add support for checking shapes that allow broadcasting. (#1849) 07 April 2022, 08:47:46 UTC
0c87c20 Factor shape checking out into a separate class. (#1845) 04 April 2022, 14:53:36 UTC
460d16b A handful of minor fixes to check_shapes. (#1846) 01 April 2022, 15:30:05 UTC
42ccdef Attempt to make `test_check_shapes__disable__speed[tf.function]` less flaky (#1838) 01 April 2022, 14:50:03 UTC
68d590a Add a bibliography to the GPflow documentation. (#1842) 01 April 2022, 13:50:50 UTC
075fd3e Refactor parser.py for better code reuse. (#1839) 01 April 2022, 13:07:46 UTC
d53864c Shuffle some types to fix problems with forward references in our documentation (#1841) 31 March 2022, 15:38:27 UTC
04da110 Programatically determine line numbers for tests. (#1837) 30 March 2022, 10:37:12 UTC
506f025 Rewrite generate_module_rst to fix various bugs. (#1833) 30 March 2022, 09:36:12 UTC
90ac0d6 Simplify build dependencies. (#1835) 30 March 2022, 08:57:44 UTC
a146d58 Add support for user notes on shapes. (#1836) 29 March 2022, 16:05:30 UTC
3e9f4e9 Rework check_shapes errors. (#1822) 29 March 2022, 09:56:09 UTC
672c472 Fix new version of click breaking old version of black. (#1834) 29 March 2022, 09:29:07 UTC
86352c4 Fix some broken links. (#1831) 25 March 2022, 12:30:41 UTC
8ccc274 Fix broken docs build (again). (#1830) 25 March 2022, 11:51:33 UTC
1da0426 Remove numpydoc and fix unexpected sections. (#1829) 24 March 2022, 16:15:16 UTC
87c4e73 Remove some likelihood stuff that has been deprecated for about 2 years. (#1826) 24 March 2022, 13:40:17 UTC
7705cee Don't repeat documentation for functions used multiple times in multiple-dispatch. (#1828) 24 March 2022, 13:14:27 UTC
984185a fix typo (#1824) 24 March 2022, 10:18:08 UTC
cc7ed07 Fix doc builds. (#1819) 23 March 2022, 14:34:26 UTC
9269ce4 Add configuration of check_shapes. (#1810) 18 March 2022, 09:12:15 UTC
12bcf49 Add accesors for setting/getting previously applied . (#1815) 16 March 2022, 11:34:01 UTC
ee8dd4d Be uptight about __all__, and fix revealed mypy errors. (#1816) 16 March 2022, 10:57:46 UTC
e8c3cc8 Fix type error with mypy 0.940. (#1814) 14 March 2022, 14:22:11 UTC
78230b9 Enable warnings when returning 'Any'. (#1812) 10 March 2022, 15:03:54 UTC
eb3ac3e Speed up posterior computation (#1811) Co-authored-by: Uri Granta <uri.granta@secondmind.io> 10 March 2022, 13:52:18 UTC
457ddf8 Support Optional values for check_shapes. (#1797) 08 March 2022, 13:31:32 UTC
18253ba Make posterior predict more memory efficient (#1809) * Use einsum rather than diag_part on a product * Format * Handle leading dimensions Co-authored-by: Uri Granta <uri.granta@secondmind.io> 08 March 2022, 12:48:15 UTC
9332bd1 Add a hook to let the user register shapes for custom types. (#1798) 08 March 2022, 11:18:18 UTC
4a33529 Support anonymous dimensions in check_shapes. (#1796) 08 March 2022, 10:26:22 UTC
2f9afd1 Test builds with both minimum and maximum supported versions. (#1807) 08 March 2022, 08:59:28 UTC
0783cf4 Trigger the doc build corresponding to the current branch. (#1808) 07 March 2022, 16:47:10 UTC
94b4328 Upgrade minimally supported versions to Python 3.7 and TensorFlow 2.4. (#1803) 07 March 2022, 09:46:39 UTC
b272b67 Remove gpflow.utilities.utilities. (#1804) 04 March 2022, 13:39:37 UTC
7ef68be Fix problems discovered by numpy with type hints. (#1802) 04 March 2022, 12:08:09 UTC
a4ebca0 Make BO integration tests faster - they're currently our slowest tests. (#1805) 04 March 2022, 11:45:40 UTC
cdf3c93 Fixed formatting of matrices in SGPR notebook (#1806) 04 March 2022, 11:25:01 UTC
4bdd8a5 Improved confusing scoping of method (#1800) The `_init_variational_parameters` method was using the instance attribute (`self.q_diag`) as well as input argument `q_diag` which refer to the same thing and should never diverge. In fact, `self.diag` is never used anywhere else so does not have to be an attribute. 04 March 2022, 10:28:47 UTC
bc68675 Add type hints to models. (#1799) 03 March 2022, 11:27:11 UTC
2ca04f2 Add type hints to utilities. (#1795) 01 March 2022, 16:37:07 UTC
1171b9c Merge pull request #1794 from GPflow/develop Release 2.4.0 01 March 2022, 12:35:20 UTC
f3d90e8 Prepare for release 2.4.0. (#1793) 01 March 2022, 11:27:25 UTC
0c06b33 Add back a len(inducing_points) to break our users less. (#1792) 01 March 2022, 10:09:02 UTC
cce19d8 Lift the requirement that batch dimensions must be leading. (#1788) 28 February 2022, 13:29:34 UTC
0c36943 Add type hints to conditionals, monitoring, and optimizers. (#1789) 28 February 2022, 10:56:13 UTC
ec65e54 Make sure posteriors work for Bayesian Optimisation. (#1767) 28 February 2022, 09:59:11 UTC
c7a2be7 Make the VGP support variable-shaped data. (#1774) 24 February 2022, 16:07:16 UTC
42bbfa6 Add type hints to conditionals. (#1787) 24 February 2022, 15:11:53 UTC
65a355f Include the .lark files when installing GPflow. (#1785) 24 February 2022, 11:05:21 UTC
ef8cc40 Add type hints to kernels. (#1783) 23 February 2022, 10:46:12 UTC
b10ac8b Use domain-specific language for specifying tensor shapes. (#1782) 22 February 2022, 14:18:43 UTC
a464b22 Add type hints to expectations, likelihoods, and posterior tests. (#1780) 15 February 2022, 14:30:39 UTC
c49d701 Add more type hints. (#1777) 14 February 2022, 09:56:41 UTC
5f30be1 Add type hints to the config tests. (#1775) 10 February 2022, 09:33:16 UTC
f07b133 Add mypy annotations to some of the tests. (#1773) 09 February 2022, 14:01:11 UTC
ace1f8f Add mypy annotations to covariances and expectations. (#1771) 07 February 2022, 10:11:38 UTC
f52cedb Add posterior object for VGP model. (#1761) 04 February 2022, 12:52:35 UTC
626cdee Refactor check_shapes into multiple files. (#1768) 04 February 2022, 08:57:41 UTC
927eda1 Add types to the configuration, and remove unused imports. (#1769) 03 February 2022, 15:50:50 UTC
b52f9e7 Make mypy a bit more strict, and fix revealed problems. (#1766) 31 January 2022, 10:50:34 UTC
f70e04d Clean up posterior caching code. (#1763) 27 January 2022, 16:51:57 UTC
6fb65a0 Add initial code for shape checking. (#1760) 26 January 2022, 14:46:22 UTC
665a5c9 Install everything in one pip command, to better handle dependency version resolution. (#1764) 26 January 2022, 11:58:07 UTC
32b9ded Make dataclasses dependency conditional at install time (#1759) * Make dataclasses dependency conditional at install time Ensures dataclasses is not treated as a dependency of the "any" wheel on Python 3.7+ Co-authored-by: Jesper Nielsen <44195043+jesnie@users.noreply.github.com> 24 January 2022, 11:40:37 UTC
435dfcb Rapela simplify calc psi in elbo and predict_f (#1755) * Fixed typo in SGPR equation * Removed uncessary sigmas in BayesianGPLVM Co-authored-by: st-- <st--@users.noreply.github.com> Co-authored-by: Jesper Nielsen <44195043+jesnie@users.noreply.github.com> 24 January 2022, 10:51:40 UTC
6f7c111 Bump ipython from 7.18.1 to 7.31.1 in /doc (#1762) Bumps [ipython](https://github.com/ipython/ipython) from 7.18.1 to 7.31.1. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/7.18.1...7.31.1) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 24 January 2022, 10:03:37 UTC
a365045 Merge pull request #1757 from GPflow/develop Release 2.3.1 20 January 2022, 11:23:01 UTC
501b8c2 Bump version to 2.3.1 (#1756) 20 January 2022, 10:58:20 UTC
1a2c9d2 Andrewl/fix gpr posterior leading dim (#1747) * add leading dimension use case to test_gpr_posterior.py * address leading dimension issues in GPRPosterior * change release notes * make test use more leading dims * handle more leading dims * fix test dimensions * Remove 'EllipsisType = type(...)' which was causing mypy issues. 05 January 2022, 11:07:06 UTC
ed28523 Handle unconnected gradients in gpflow.optimizers.Scipy. (#1745) Handle unconnected gradients in gpflow.optimizers.Scipy. 14 December 2021, 11:03:17 UTC
f3570cb Fix #1733 (#1734) 03 December 2021, 16:30:55 UTC
7ec8bb3 Adjust test dependencies. (#1743) 30 November 2021, 12:17:33 UTC
e7c26a4 Fix broken docs generation triggering. (#1744) 30 November 2021, 11:58:11 UTC
927a6b6 Set kernelspec on cplb.pct.py. (#1742) 29 November 2021, 16:32:07 UTC
e126de0 Add test requirements to make dev-install. (#1737) 29 November 2021, 12:18:07 UTC
c692b65 Update CircleCi build to use next-gen Docker images. (#1740) 29 November 2021, 11:19:51 UTC
1892eb1 Fix broken link in README.md. (#1736) Fix broken link in README.md. 29 November 2021, 10:54:51 UTC
ccfa49b Fix broken CircleCi build. (#1738) Fix broken CircleCi build. 29 November 2021, 10:12:39 UTC
d088c2c docs/README.md: explain how to run notebooks locally (#1729) Closes https://github.com/GPflow/GPflow/issues/1674 27 October 2021, 08:05:54 UTC
3f4604b Merge pull request #1717 from GPflow/develop Release 2.3.0 26 October 2021, 09:28:09 UTC
5442883 attempt to fix #1721 (#1727) 26 October 2021, 09:03:27 UTC
d015286 fix broken link (#1718) 26 October 2021, 09:00:11 UTC
30a689d Merge pull request #1726 from GPflow/st/develop-master-merge-oct2021 Merge master back into develop 26 October 2021, 08:59:21 UTC
c1716a0 Merge branch 'master' into st/develop-master-merge-oct2021 26 October 2021, 08:36:00 UTC
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