| 731c5dc | Artem Artemev | 04 April 2018, 08:02:40 UTC | Merge branch 'master' into expectations | 04 April 2018, 08:02:40 UTC |
| 919ea6f | Artem Artemev | 03 April 2018, 22:32:39 UTC | Docstring updates. | 03 April 2018, 22:32:39 UTC |
| 29fe092 | Adrià Garriga | 03 April 2018, 22:18:10 UTC | Fixed regression to bug in #615 (#700) * Fixed regression to bug in #615 Refactoring `expectations.py` re-introduced the bug fixed by #615, for which we decided to not introduce a test. This contains the bug fix and the test. * Removed magic number, rewrote test to convention, removed unused import Basically incorporated all of @awav's suggestions + removed an unused import. | 03 April 2018, 22:18:10 UTC |
| f076951 | Alessandro Davide Ialongo | 28 March 2018, 16:45:06 UTC | expectations: pass num hermite points to _expectation() and minor cleaning | 03 April 2018, 17:06:16 UTC |
| 16570be | Artem Artemev | 29 March 2018, 10:51:23 UTC | NatGrads notebook cleanup (#696) * added notebook * added callback to first example * Clean up Natural Gradients notebook. * Final change in NatGrads notebook. * Address PR review. Typo in conjugate case. Likelihood printing. * Conjugate to non-conjugate. | 29 March 2018, 10:51:23 UTC |
| e2acd61 | Hugh Salimbeni | 28 March 2018, 11:10:42 UTC | Natural gradients notebook (#691) * added notebook * added callback to first example | 28 March 2018, 11:10:42 UTC |
| c283fec | Artem Artemev | 27 March 2018, 10:27:17 UTC | GPflow Actions. (#678) * Action initials. * Introducing actions. * Change implicit interfaces for an optimizer. * Add simple action tests. * Natural gradient integration. * Unify natural gradient optimizer interface. * Fix NatGradOptimizer test. * Forgot to add actions.py file. | 27 March 2018, 10:27:17 UTC |
| f3fe7da | ADAM | 26 March 2018, 13:21:04 UTC | Update gauss_kl to work with K matrices of shape L x M x M (previously M x M only) (#682) Update gauss_kl to work with K matrices of shape L x M x M | 26 March 2018, 13:21:04 UTC |
| 25116dc | Artem Artemev | 26 March 2018, 09:20:50 UTC | Merge pull request #688 from a5a/master Fixed ModuleNotFoundError | 26 March 2018, 09:20:50 UTC |
| 5fbff19 | asa | 22 March 2018, 17:17:56 UTC | fixed ModuleNotFoundError in natgrad_optimizer | 22 March 2018, 17:17:56 UTC |
| ef45c39 | Artem Artemev | 20 March 2018, 12:37:23 UTC | Merge pull request #674 from GPflow/awav/natural-gradient-optimizer Natural Gradient Optimizer | 20 March 2018, 12:37:23 UTC |
| aa3821b | Hugh Salimbeni | 16 March 2018, 14:59:38 UTC | Update doc strings for XiTransformation and add explanation to NatGrad tests. | 20 March 2018, 10:16:55 UTC |
| 9d8f3c1 | Artem Artemev | 15 March 2018, 23:19:55 UTC | Merge with updated branch. | 15 March 2018, 23:27:18 UTC |
| 0342cb9 | Artem Artemev | 15 March 2018, 23:18:25 UTC | SVGP vs SGPR optimization test fixed. | 15 March 2018, 23:18:25 UTC |
| 80528a3 | hrs13 | 14 March 2018, 13:25:41 UTC | added tests for xi transforms, and added nasty placeholder_with_default | 14 March 2018, 13:25:41 UTC |
| 6014011 | James Hensman | 14 March 2018, 11:48:31 UTC | Merge branch 'master' into awav/natural-gradient-optimizer | 14 March 2018, 11:48:31 UTC |
| 0bb77c3 | Artem Artemev | 11 March 2018, 23:15:40 UTC | Merge pull request #652 from GPflow/james/py27_docfix Py27 doc fix. | 11 March 2018, 23:15:40 UTC |
| 9c84c43 | Artem Artemev | 11 March 2018, 22:02:25 UTC | Merge branch 'master' into james/py27_docfix | 11 March 2018, 22:02:25 UTC |
| c1be47a | Artem Artemev | 11 March 2018, 17:20:31 UTC | Change support message for python 3.5 | 11 March 2018, 17:20:31 UTC |
| 2a41df8 | Artem Artemev | 11 March 2018, 09:30:33 UTC | Merge branch 'master' into awav/natural-gradient-optimizer | 11 March 2018, 09:30:33 UTC |
| 236c4a6 | Artem Artemev | 10 March 2018, 23:18:59 UTC | Fixing bug in tf.group. Cleaning up documentation. | 10 March 2018, 23:18:59 UTC |
| 43ba8f8 | Artem Artemev | 09 March 2018, 22:12:58 UTC | Revert changes in "likelihood.py" | 09 March 2018, 22:12:58 UTC |
| 54dd63f | Artem Artemev | 09 March 2018, 22:10:44 UTC | Change python version title | 09 March 2018, 22:10:44 UTC |
| 2ab6c18 | Artem Artemev | 09 March 2018, 22:08:30 UTC | Merge pull request #653 from ialong/master remove conditional shape changes from multivariate_normal | 09 March 2018, 22:08:30 UTC |
| 4be4f07 | Hugh Salimbeni | 08 March 2018, 19:02:33 UTC | reverted to tuple | 08 March 2018, 19:02:33 UTC |
| 9335859 | Hugh Salimbeni | 08 March 2018, 18:59:59 UTC | group op has list rather than tuple | 08 March 2018, 18:59:59 UTC |
| 5f0c251 | Hugh Salimbeni | 08 March 2018, 18:35:01 UTC | Merge branch 'master' into awav/natural-gradient-optimizer | 08 March 2018, 18:35:01 UTC |
| 00674d4 | Hugh Salimbeni | 08 March 2018, 18:33:07 UTC | Merge branch 'awav/natural-gradient-optimizer' of https://github.com/GPflow/GPflow into awav/natural-gradient-optimizer | 08 March 2018, 18:33:07 UTC |
| 4edfd9d | Hugh Salimbeni | 08 March 2018, 18:32:54 UTC | added test with excluded vars | 08 March 2018, 18:32:54 UTC |
| 83f52d4 | Artem Artemev | 08 March 2018, 17:33:11 UTC | Modify notation with unicode symbols | 08 March 2018, 17:33:11 UTC |
| a5b06ef | Hugh Salimbeni | 08 March 2018, 14:08:21 UTC | formatting | 08 March 2018, 14:08:21 UTC |
| 2e42560 | Hugh Salimbeni | 08 March 2018, 14:06:55 UTC | added more tests | 08 March 2018, 14:06:55 UTC |
| 653babe | Hugh Salimbeni | 08 March 2018, 12:12:55 UTC | added nat grads tests | 08 March 2018, 12:12:55 UTC |
| 08333e2 | Alessandro Davide Ialongo | 08 March 2018, 11:27:31 UTC | hit warning lines | 08 March 2018, 11:27:31 UTC |
| dac1c73 | Artem Artemev | 07 March 2018, 18:45:34 UTC | Merge branch 'master' into master | 07 March 2018, 18:45:34 UTC |
| 4196ef5 | Artem Artemev | 07 March 2018, 18:44:02 UTC | Merge pull request #665 from GPflow/stj/autoflow_fix_docstr Minor improvement to decorators and AutoBuild | 07 March 2018, 18:44:02 UTC |
| 545cf74 | Alessandro Davide Ialongo | 07 March 2018, 16:30:00 UTC | Merge branch 'master' of github.com:GPflow/GPflow | 07 March 2018, 16:30:00 UTC |
| 24dd403 | Artem Artemev | 07 March 2018, 16:15:03 UTC | Merge branch 'master' into stj/autoflow_fix_docstr | 07 March 2018, 16:15:03 UTC |
| 6ebe0c6 | Alessandro Davide Ialongo | 07 March 2018, 16:05:03 UTC | update density tests | 07 March 2018, 16:05:03 UTC |
| 1fa2fb4 | Alessandro Davide Ialongo | 07 March 2018, 16:02:44 UTC | change copy paste error x has to be changed to mu on line 94 | 07 March 2018, 16:02:44 UTC |
| ad97bf4 | Artem Artemev | 07 March 2018, 15:41:31 UTC | Clarify user messages. | 07 March 2018, 15:41:31 UTC |
| ba69996 | Artem Artemev | 07 March 2018, 15:30:43 UTC | Copy original docstring always | 07 March 2018, 15:30:43 UTC |
| d15e445 | ST John | 07 March 2018, 10:21:06 UTC | add ``` | 07 March 2018, 10:21:06 UTC |
| 80b82c5 | Artem Artemev | 06 March 2018, 21:46:25 UTC | Merge pull request #656 from GPflow/hugh/fix_triangular_transform fix consistency of triangular transform | 06 March 2018, 21:46:25 UTC |
| 9d04e3d | James Hensman | 06 March 2018, 18:15:36 UTC | docstrings in LowerTriangular transform, with help from Artem | 06 March 2018, 18:15:36 UTC |
| 3bf5314 | James Hensman | 06 March 2018, 17:59:21 UTC | Merge branch 'master' into hugh/fix_triangular_transform | 06 March 2018, 17:59:21 UTC |
| 7e8dc9f | st-- | 05 March 2018, 19:41:14 UTC | Adds rational-quadratic kernel and minor clean-up of notation (#666) * (square|euclid)_dist -> scaled_(square|euclid)_dist to make clear that it is already divided by lengthscale * add RationalQuadratic kernel * SquaredExponential * add test case * reoder * add DeprecationWarnings * improve docstrings * space * add no-cover pragmas for deprecated methods | 05 March 2018, 19:41:14 UTC |
| 1e0b45b | ST John | 04 March 2018, 14:34:59 UTC | fix typo in docstring | 04 March 2018, 14:34:59 UTC |
| 5ce105f | James Hensman | 02 March 2018, 16:10:31 UTC | improving dosctrings for LowerTriangular transform | 02 March 2018, 16:10:31 UTC |
| 91e6e65 | ST John | 02 March 2018, 10:03:15 UTC | tidy up decorators | 02 March 2018, 10:03:15 UTC |
| 785c537 | ST John | 02 March 2018, 10:03:00 UTC | keep original __init__'s docstring for Node subclasses | 02 March 2018, 10:03:00 UTC |
| f9eeb64 | James Hensman | 28 February 2018, 11:46:58 UTC | Merge branch 'hugh/fix_triangular_transform' of github.com:GPflow/GPflow into hugh/fix_triangular_transform | 28 February 2018, 11:46:58 UTC |
| 4ed6aa5 | James Hensman | 28 February 2018, 11:43:03 UTC | even more triangular_transform tests | 28 February 2018, 11:43:03 UTC |
| 9e7cd3f | James Hensman | 28 February 2018, 10:00:54 UTC | Merge branch 'master' into hugh/fix_triangular_transform | 28 February 2018, 10:00:54 UTC |
| 47d119d | James Hensman | 28 February 2018, 09:59:45 UTC | more tests for lowerTriangular transofrms | 28 February 2018, 09:59:45 UTC |
| 8fac3c4 | vdutor | 27 February 2018, 17:02:09 UTC | Corrected the PCA implementation (#661) | 27 February 2018, 17:02:09 UTC |
| 5809cb0 | James Hensman | 26 February 2018, 17:08:53 UTC | updating triangular transforms (no longer flat) | 26 February 2018, 17:08:53 UTC |
| fa79152 | Hugh Salimbeni | 23 February 2018, 13:01:45 UTC | started combination optimizer | 23 February 2018, 13:01:45 UTC |
| c61a002 | Artem Artemev | 23 February 2018, 12:03:59 UTC | Small fixes in natgrads module. | 23 February 2018, 12:03:59 UTC |
| 49a8be4 | hrs13 | 22 February 2018, 19:10:34 UTC | added test and applied flattening | 22 February 2018, 19:10:34 UTC |
| 6c43de1 | Stefanos Eleftheriadis | 21 February 2018, 17:27:10 UTC | fixed squeezing bug in LowerTriangular transform (#654) | 21 February 2018, 17:27:10 UTC |
| 830858e | Alessandro Davide Ialongo | 21 February 2018, 12:19:10 UTC | remove conditional shape changes from multivariate_normal | 21 February 2018, 12:19:10 UTC |
| bc2de16 | Mark van der Wilk | 19 February 2018, 12:03:05 UTC | Small typo | 19 February 2018, 12:03:05 UTC |
| d0f5fe8 | James Hensman | 19 February 2018, 09:40:20 UTC | updating contributing page | 19 February 2018, 09:40:20 UTC |
| cddb34b | James Hensman | 19 February 2018, 09:38:04 UTC | Merge branch 'master' of github.com:GPflow/GPflow | 19 February 2018, 09:38:04 UTC |
| 1ffbcd2 | Artem Artemev | 19 February 2018, 09:36:28 UTC | Add NatGradOptimizer. | 19 February 2018, 09:36:28 UTC |
| e055218 | Ahsan Alvi | 18 February 2018, 11:03:32 UTC | fixed merge conflicts in the notebooks (#649) | 18 February 2018, 11:03:32 UTC |
| 0eaa40d | Artem Artemev | 13 February 2018, 22:11:51 UTC | Refactor index & naming rules. (#645) * shows short info about gpflow object. * Remove hidden names from core parentable class. * Intermediate result. * Add distinguishable pathname. * Refactor indices generation, parentable naming managment. * Transitioning to new indixes. * Rename full_name property on pathname. * Fixing tests. * Travis ignore user warnings. * Increase timeout notebook. * Tests for parentable cases. * Remove Node __repr__. * Renaming for build_name and build_pathname. Add deprication for full_name property. * Adding tests for depricated function. | 13 February 2018, 22:11:51 UTC |
| a8f487a | Mark van der Wilk | 08 February 2018, 13:01:45 UTC | Some more Parameter inits respect default parameters. (#647) | 08 February 2018, 13:01:45 UTC |
| d1ac7b8 | Alessandro Davide Ialongo | 07 February 2018, 13:36:57 UTC | Expectations speedup and refactoring: * new implementations of RBF and Linear kernel expectations as well as the RBF-Linear cross kernel expectation * more efficient mean function expectation handling * Streamline quadrature expectations and unified the expectations files * clearer distinction between quadrature_expectation and expectation which makes @quadrature_fallback superfluous * "Private" _expectation methods are kept private * Improve handling of Sum kernels (with 1 bug fixed on when cross expectations simplify) * switch to assert_allclose instead of the less advisable assert_almost_equal * switch around (feat, kern) to (kern, feat) in expectations for consistency * improve test coverage and reduced error tolerance * add, correct and improve docstrings * make covariance name consistent for all Gaussian probability_distributions: p.cov * add shape inference for guassian covariances | 07 February 2018, 14:00:17 UTC |
| da01a3f | James Hensman | 31 January 2018, 16:54:44 UTC | Merge pull request #636 from ialong/pandas_reindex remove reindex_axis call in pretty_pandas_table | 31 January 2018, 16:54:44 UTC |
| d8984b1 | Artem Artemev | 29 January 2018, 17:49:17 UTC | Minimize function for NatgradOptimizer. | 29 January 2018, 17:49:17 UTC |
| 1728765 | Artem Artemev | 29 January 2018, 17:46:11 UTC | Add natural optimizer. | 29 January 2018, 17:46:11 UTC |
| 52c222b | Alessandro Davide Ialongo | 29 January 2018, 14:56:11 UTC | remove deprecated .reindex_axis() and refactor variable names | 29 January 2018, 16:16:27 UTC |
| d25eb15 | Alessandro Davide Ialongo | 24 January 2018, 19:32:04 UTC | fix vector handling and broadcasting in multivariate_normal density (#627) * fix vector handling and broadcasting in multivariate_normal density * change GPR to sum over likelihood values * add docstrings | 24 January 2018, 19:32:04 UTC |
| 2742332 | Artem Artemev | 23 January 2018, 17:25:18 UTC | Merge pull request #622 from GPflow/awav/documentation-update Update docstrings for core stuff. | 23 January 2018, 17:25:18 UTC |
| 71f7bef | Artem Artemev | 23 January 2018, 16:59:12 UTC | Merge branch 'master' into awav/documentation-update | 23 January 2018, 16:59:12 UTC |
| 8b7f36e | Artem Artemev | 23 January 2018, 16:38:57 UTC | Merge pull request #632 from GPflow/vincent/pickling Vincent/pickling | 23 January 2018, 16:38:57 UTC |
| 6d7c0f9 | vdutor | 23 January 2018, 16:13:30 UTC | Merge branch 'master' into vincent/pickling | 23 January 2018, 16:13:30 UTC |
| e23df44 | vdutor | 23 January 2018, 16:12:11 UTC | Minor fix to allow unpickling models | 23 January 2018, 16:12:11 UTC |
| 9b13309 | Mark van der Wilk | 22 January 2018, 17:30:47 UTC | Update README.md to contain reference to gpflow-monitor (#623) | 22 January 2018, 17:30:47 UTC |
| f2c8127 | Mark van der Wilk | 19 January 2018, 18:21:05 UTC | Merge branch 'master' into awav/documentation-update | 19 January 2018, 18:21:05 UTC |
| ab0e2ab | Artem Artemev | 17 January 2018, 22:33:55 UTC | Merge pull request #621 from GPflow/awav/expectation-tests-clearance Expectation test clearance along with new test features. | 17 January 2018, 22:33:55 UTC |
| cdf299a | Artem Artemev | 16 January 2018, 22:31:08 UTC | Remove unnecessary comments in Expectation tests. | 16 January 2018, 22:31:08 UTC |
| db0f421 | Mark van der Wilk | 16 January 2018, 16:47:29 UTC | Merge branch 'master' into awav/expectation-tests-clearance | 16 January 2018, 16:47:29 UTC |
| 5f2a6d4 | Adrià Garriga | 16 January 2018, 12:01:37 UTC | Gradient of `sqrt(RBF(Z, Z))` no longer NaN (#615) * Gradient of `sqrt(RBF(Z, Z))` no longer NaN Before this commit, `Kmms = sqrt(exp(-1/x)) = exp(-1/(2x))`. These two expressions are equivalent mathematically. However, they are not equivalent when it comes to computing finite-precision gradients (dKmms/dx) via backpropagation when `Kmms**2 == 0.0`. Thus, we change sqrt(exp(-1/x)) to exp(-1/(2x)). This solves #595 in the expectations framework. * Removed test for NaN gradients of eKxzKz | 16 January 2018, 12:01:37 UTC |
| b9d40db | Artem Artemev | 15 January 2018, 14:54:44 UTC | Merge branch 'master' into awav/documentation-update | 15 January 2018, 14:54:44 UTC |
| 22272ea | Artem Artemev | 15 January 2018, 14:51:11 UTC | Clarify read index method. | 15 January 2018, 14:51:11 UTC |
| 33083a8 | Artem Artemev | 15 January 2018, 14:07:56 UTC | Merge branch 'master' into awav/expectation-tests-clearance | 15 January 2018, 14:07:56 UTC |
| 8e9a681 | James Hensman | 10 January 2018, 11:02:04 UTC | Merge branch 'master' of github.com:GPflow/GPflow | 10 January 2018, 11:02:04 UTC |
| a75f24a | James Hensman | 08 January 2018, 13:21:07 UTC | improvements and clarifications to the handling of num_latent (#609) * improvements and clarifications to the handling of num_latent. Also fizes the coregion notebook * removing leftover debug lines * adding a regression test for the wrong number of latent functions in a switched likelihood * Pass num_latent to GPModel in SGPMC * Pass num_latent to GPModel in GPMC * Pass num_latent to GPModel in SVGP * Removed ignore notebooks argument in travis config * Let codecov ignore the doc notebooks | 08 January 2018, 13:21:07 UTC |
| a0c0227 | Alexander G. de G. Matthews | 06 January 2018, 17:29:18 UTC | Merge pull request #612 from GPflow/qsqrt-order `q_sqrt` is now D x M x M. | 06 January 2018, 17:29:18 UTC |
| 2bfbaee | Artem Artemev | 06 January 2018, 16:13:54 UTC | Convert numbers to tensors explicitly. | 06 January 2018, 16:13:54 UTC |
| 5d63ecd | Artem Artemev | 06 January 2018, 15:55:45 UTC | Add auxilary functions at test_util. Untie expectation tests from single graph usage. | 06 January 2018, 15:55:45 UTC |
| 4dc651f | Mark van der Wilk | 05 January 2018, 10:22:42 UTC | `q_sqrt` is now D x M x M. | 05 January 2018, 15:30:16 UTC |
| a1d1516 | James Hensman | 04 January 2018, 16:28:15 UTC | improvements and clarifications to the handling of num_latent. Also fizes the coregion notebook | 04 January 2018, 16:28:15 UTC |
| 1342c28 | Alexander G. de G. Matthews | 04 January 2018, 11:15:29 UTC | Merge pull request #607 from GPflow/awav/awav-backward-tensors Missing part in transform - backward_tensor | 04 January 2018, 11:15:29 UTC |
| b84c44e | Alexander G. de G. Matthews | 04 January 2018, 11:02:09 UTC | Merge branch 'master' into awav/awav-backward-tensors | 04 January 2018, 11:02:09 UTC |
| 4827068 | vdutor | 03 January 2018, 17:44:53 UTC | Expectations framework (#591) * Outline of new expectations code. * Quadrature code now uses TensorFlow shape inference. * General expectations work. * Expectations RBF kern, not tested * Add Identity mean function * General unittests for Expectations * Add multipledispatch package to travis * Update tests_expectations * Expectations of mean functions * Mean function uncertain conditional * Uncertain conditional with mean_function. Tested. * Support for Add and Prod kernels and quadrature fallback decorator * Refactor expectations unittests * Psi stats Linear kernel * Split expectations in different files * Expectation Linear kernel and Linear mean function * Remove None's from expectations api * Removed old ekernels framework * Add multipledispatch to setup file * Work on PR feedback, not finished * Addressed PR feedback * Support for pairwise xKxz * Enable expectations unittests * Renamed `TimeseriesGaussian` to `MarkovGaussian` and added tests. * Rename some variable, plus note for later test of <x Kxz>_q. * Update conditionals.py Add comment * Change order of inputs to (feat, kern) * Stef/expectations (#601) * adding gaussmarkov quad * don't override the markvogaussian in the quadrature * can't test * adding external test * quadrature code done and works for MarkovGauss * MarkovGaussian with quad implemented. All tests pass * Shape comments. * Removed superfluous autoflow functions for kernel expectations * Update kernels.py * Update quadrature.py | 03 January 2018, 17:44:53 UTC |
| 2182bf0 | James Hensman | 03 January 2018, 15:41:39 UTC | Merge pull request #604 from GPflow/awav/notebook-tests Notebook test clearance. | 03 January 2018, 15:41:39 UTC |
