| 2c8211b | Eh Tan | 22 January 2008, 19:38:43 UTC | Computes the derivatives of shape functions and jacobians only once and stores them for later use. This reduces the total cpu time of cookbook8 by 13%. - get_global_shape_fn_sph() computes and stores the derivatives of shape functions and jacobians. - Moved get_global_shape_fn() to Obsolete.c - Calling construct_shape_function_derivatives() in initial_mesh_solver_setup(). This function call get_global_shape_fn_sph() for each element. - get_rtf_at_vpts() and get_rtf_at_ppts() are for coord. transformation matrix at vpts and ppts respectively - Passed arguments by references in PG solvers instead of by values to avoid copying. | 22 January 2008, 19:38:43 UTC |
| 64dc706 | Thorsten Becker | 17 January 2008, 02:06:25 UTC | Changed GNOMONIC to CITCOM_GNOMONIC to avoid namespace conflict with GMT gmt.h | 17 January 2008, 02:06:25 UTC |
| 07ddb1c | Eh Tan | 16 January 2008, 20:53:14 UTC | Forgot to checkin this file | 16 January 2008, 20:53:14 UTC |
| 97b3adf | Eh Tan | 16 January 2008, 20:34:22 UTC | Added timing information for tracer module. The timing is reported in *.tracer_log.* files. | 16 January 2008, 20:34:22 UTC |
| 077bc61 | Eh Tan | 16 January 2008, 20:30:09 UTC | A more memory efficient way to find shape function for tracers. - Migrated E->tracer.UV to E->gnomonic. The reference point is the 1st node of the local mesh. The 0th element of E->gnomonic stores the sine of cosine of reference theta. - Convertd shape_coefs array from size of nel to size of snel to save memory. | 16 January 2008, 20:30:09 UTC |
| 1637c6f | Eh Tan | 15 January 2008, 23:36:54 UTC | Added Luis Armendariz to the author list | 15 January 2008, 23:36:54 UTC |
| 7d95bab | Eh Tan | 15 January 2008, 23:11:38 UTC | Simplified loop over levels | 15 January 2008, 23:11:38 UTC |
| a12771a | Eh Tan | 15 January 2008, 23:05:58 UTC | Reverted previous checkin | 15 January 2008, 23:05:58 UTC |
| e30ef29 | Eh Tan | 15 January 2008, 23:01:26 UTC | Simplified loop over levels | 15 January 2008, 23:01:26 UTC |
| 6febbb9 | Eh Tan | 15 January 2008, 00:29:40 UTC | Forgot to rename variables | 15 January 2008, 00:29:40 UTC |
| 50251ba | Eh Tan | 14 January 2008, 23:03:21 UTC | Fixed 2 bugs in full_coord_of_cap(). 1. x and y arrays were overridden in the loop of level. 2. Choice of reference point was not optimal and may cause round off problem. | 14 January 2008, 23:03:21 UTC |
| 50c6d05 | Eh Tan | 03 January 2008, 19:51:53 UTC | Re-applied patches that got reverted in r8973 | 03 January 2008, 19:51:53 UTC |
| b08db17 | Thorsten Becker | 29 December 2007, 07:02:49 UTC | Trying to sync back up, those should be old changes, I hope. | 29 December 2007, 07:02:49 UTC |
| 7d7984a | Eh Tan | 20 December 2007, 20:30:13 UTC | Generated global mesh by great circles. Tracer module can split the cap in the map view now. | 20 December 2007, 20:30:13 UTC |
| aab74be | Eh Tan | 20 December 2007, 20:27:41 UTC | Fine tune the mesh so that each cap has the same surface area | 20 December 2007, 20:27:41 UTC |
| 1946b88 | Eh Tan | 20 December 2007, 20:26:04 UTC | Removed obsolete code | 20 December 2007, 20:26:04 UTC |
| 031dd16 | Eh Tan | 20 December 2007, 20:25:33 UTC | Fixed a redundant cast | 20 December 2007, 20:25:33 UTC |
| a6cfbf2 | Eh Tan | 17 December 2007, 22:06:06 UTC | Fixed phase change width | 17 December 2007, 22:06:06 UTC |
| 726f389 | Eh Tan | 12 November 2007, 22:42:56 UTC | Updated the version number and file NEWS | 12 November 2007, 22:42:56 UTC |
| 8b1c234 | Eh Tan | 12 November 2007, 22:38:36 UTC | Added mishing header file to the makefile, also avoided compiling unused code. | 12 November 2007, 22:38:36 UTC |
| 3585011 | Thorsten Becker | 11 November 2007, 20:37:22 UTC | Synching with the new release, none of those changes should be relevant. | 11 November 2007, 20:37:22 UTC |
| 0612d94 | Eh Tan | 08 November 2007, 22:41:31 UTC | Updated file ChangeLog to r8244 | 08 November 2007, 22:41:31 UTC |
| 209f8f4 | Eh Tan | 08 November 2007, 22:31:21 UTC | Replaced a system call by std C library remove() and disabled another system call (backup input file). Partially fixed issue130. All remaining system calls are in lib/Output_gzdir.c. | 08 November 2007, 22:31:21 UTC |
| d280056 | Eh Tan | 08 November 2007, 21:38:09 UTC | Updated file ChangeLog to r8242 | 08 November 2007, 21:38:09 UTC |
| eb0cd74 | Eh Tan | 08 November 2007, 21:36:55 UTC | Removed binary checkpoint files from makefile, as the file size is too big for distribution. | 08 November 2007, 21:36:55 UTC |
| 4ffbc25 | Eh Tan | 08 November 2007, 21:17:14 UTC | Updated file ChangeLog to r8240 | 08 November 2007, 21:17:14 UTC |
| 2b294a0 | Eh Tan | 08 November 2007, 19:19:12 UTC | Update the version number | 08 November 2007, 19:19:12 UTC |
| 744e0f1 | Eh Tan | 08 November 2007, 19:18:52 UTC | Update NEWS | 08 November 2007, 19:18:52 UTC |
| 6e63c0b | Eh Tan | 08 November 2007, 19:18:26 UTC | Dereased the timestep size to reduce artifacts in advection | 08 November 2007, 19:18:26 UTC |
| 678f8c2 | Eh Tan | 07 November 2007, 19:52:39 UTC | Decreased the # of processors. This is the only way I can reproduce single-cell convection as in the manual. | 07 November 2007, 19:52:39 UTC |
| ef214c1 | Eh Tan | 07 November 2007, 19:52:17 UTC | Removed comp_el from default output, since it is not required for restart anymore. | 07 November 2007, 19:52:17 UTC |
| 9dbf4b9 | Eh Tan | 07 November 2007, 19:51:56 UTC | Print a warning when matrix eqn solver not converging | 07 November 2007, 19:51:56 UTC |
| 7153443 | Eh Tan | 06 November 2007, 23:18:54 UTC | Added cgrad solver convergence parameters, increased buoyancy_ratio and lower the # of steps | 06 November 2007, 23:18:54 UTC |
| 1dabe41 | Eh Tan | 06 November 2007, 23:18:35 UTC | Removed unused multigrid parameters | 06 November 2007, 23:18:35 UTC |
| bfead3f | Eh Tan | 06 November 2007, 23:18:12 UTC | Increase vlowstep to match the default value in pyre | 06 November 2007, 23:18:12 UTC |
| 965c015 | Eh Tan | 06 November 2007, 23:17:54 UTC | Fixed a few memory errors | 06 November 2007, 23:17:54 UTC |
| bad9502 | Eh Tan | 06 November 2007, 01:04:43 UTC | Init'd some variables about vtk_io, which might be accessed with uninit'd values in output_finalize() | 06 November 2007, 01:04:43 UTC |
| 9a543f7 | Eh Tan | 06 November 2007, 01:04:20 UTC | Shrank the size of sph. harm arrays | 06 November 2007, 01:04:20 UTC |
| da29725 | Eh Tan | 06 November 2007, 01:03:55 UTC | Removed functions related sph. harm in lib/Regional_obsolete.c | 06 November 2007, 01:03:55 UTC |
| 3d2ebff | Eh Tan | 06 November 2007, 01:03:35 UTC | Scaled topo with variable gravity. Fixed an error in comment. Rearranged computation. | 06 November 2007, 01:03:35 UTC |
| 2469135 | Eh Tan | 01 November 2007, 23:33:50 UTC | Fixed an error in comment | 01 November 2007, 23:33:50 UTC |
| e0c3652 | Eh Tan | 01 November 2007, 23:33:30 UTC | Print dv/v=dp/p=1.0 for the 1st Uzawa iteraion | 01 November 2007, 23:33:30 UTC |
| 6d90070 | Eh Tan | 30 October 2007, 22:29:44 UTC | Minor modification | 30 October 2007, 22:29:44 UTC |
| 1f562ce | Eh Tan | 30 October 2007, 21:54:14 UTC | Added the C program project_geoid to the makefile | 30 October 2007, 21:54:14 UTC |
| 1ea69a0 | Eh Tan | 30 October 2007, 21:53:50 UTC | A post-processing program to project geoid coefficents onto a regular (longitude, latitude) mesh | 30 October 2007, 21:53:50 UTC |
| 4d7f4a3 | Eh Tan | 30 October 2007, 21:50:52 UTC | Fixed a bug in dimensionalizing density. Provided the formula of geoid calculation in the comments. Rearranged the order of functions. | 30 October 2007, 21:50:52 UTC |
| f40dafa | Eh Tan | 30 October 2007, 21:49:58 UTC | Compute d(rho)/dr/rho from rho(r) | 30 October 2007, 21:49:58 UTC |
| 8102449 | Eh Tan | 22 October 2007, 20:57:45 UTC | Updated file ChangeLog to r8170 | 22 October 2007, 20:57:45 UTC |
| 26c3d4a | Eh Tan | 22 October 2007, 20:26:44 UTC | Updated NEWS | 22 October 2007, 20:26:44 UTC |
| a05de44 | Eh Tan | 22 October 2007, 19:46:26 UTC | Minor update | 22 October 2007, 19:46:26 UTC |
| 7823da3 | Eh Tan | 22 October 2007, 19:44:28 UTC | Simpilify INSTALL | 22 October 2007, 19:44:28 UTC |
| 4832d3d | Eh Tan | 22 October 2007, 19:03:41 UTC | Eliminated unnecessary computation | 22 October 2007, 19:03:41 UTC |
| e8a9d98 | Eh Tan | 22 October 2007, 19:03:00 UTC | Variable material properties in latent heat correction on adiabatic cooling | 22 October 2007, 19:03:00 UTC |
| 5b2e55b | Eh Tan | 22 October 2007, 19:02:29 UTC | Added some comments | 22 October 2007, 19:02:29 UTC |
| a27d3c6 | Eh Tan | 19 October 2007, 19:24:45 UTC | Renamed control.width* -> control.inv_width* for clarity | 19 October 2007, 19:24:45 UTC |
| 88a2e23 | Eh Tan | 18 October 2007, 18:53:49 UTC | Renamed coupler inventory: dimensional -> si_unit and transformational -> cartesian | 18 October 2007, 18:53:49 UTC |
| f614f83 | Eh Tan | 17 October 2007, 22:44:38 UTC | Minor change in the examples | 17 October 2007, 22:44:38 UTC |
| 25c9b53 | Eh Tan | 17 October 2007, 20:56:25 UTC | Added comments on where C code is replaced by python code in Citcom.c | 17 October 2007, 20:56:25 UTC |
| 8d2bbbe | Eh Tan | 17 October 2007, 20:55:17 UTC | Put the rest of r8111 back | 17 October 2007, 20:55:17 UTC |
| 9676e09 | Eh Tan | 17 October 2007, 20:33:21 UTC | Fixed input diffusivity parameter in the examples, from r8111. | 17 October 2007, 20:33:21 UTC |
| 69e4ad8 | Eh Tan | 17 October 2007, 20:32:54 UTC | Added back minor modification from r8111 | 17 October 2007, 20:32:54 UTC |
| 7732890 | Eh Tan | 17 October 2007, 18:40:42 UTC | Fixed a typo in the example | 17 October 2007, 18:40:42 UTC |
| 6a8e4b5 | Eh Tan | 17 October 2007, 18:36:29 UTC | Fixed a bug in remove_rigid_rot() | 17 October 2007, 18:36:29 UTC |
| 93471fe | Eh Tan | 17 October 2007, 18:35:03 UTC | Roll back r8111, reading velo files for init. temperature stays as tic_method=-1. Other changes in r8111 will be put back later. | 17 October 2007, 18:35:03 UTC |
| 1602d87 | Thorsten Becker | 13 October 2007, 19:07:53 UTC | Fixed rigid rotation code bug. Added restart=2 option which will not use checkpoints, but tic_method=-1 style temperature input (formally realized via tic_method=-1, but this should be cleaner) fixed input diffusivity parameter in full example file. | 13 October 2007, 19:07:53 UTC |
| 334bd72 | Eh Tan | 12 October 2007, 20:24:17 UTC | Turn off monitor_max_T in the test | 12 October 2007, 20:24:17 UTC |
| fdf7f72 | Eh Tan | 12 October 2007, 20:23:53 UTC | Boundary class is for regional model only, add a checking for it. | 12 October 2007, 20:23:53 UTC |
| 17b3276 | Eh Tan | 11 October 2007, 01:23:50 UTC | Cookbook 9: nested solver coupling + coor_refine + tsolver tuning | 11 October 2007, 01:23:50 UTC |
| 0f0b81a | Thorsten Becker | 11 October 2007, 00:03:40 UTC | Wiser now, commented in the E->fp output | 11 October 2007, 00:03:40 UTC |
| 4af480b | Thorsten Becker | 10 October 2007, 23:40:38 UTC | Added coor=3 option for radial node spacing a la CitcomCU. Streamlined ggrd temperature init. Added file flush to heat flow output. | 10 October 2007, 23:40:38 UTC |
| 9c14928 | Eh Tan | 10 October 2007, 21:00:13 UTC | Add an assertion | 10 October 2007, 21:00:13 UTC |
| 3c5bee2 | Eh Tan | 10 October 2007, 20:11:00 UTC | Remove rigid body rotation from the velocity solution from global model. A input parameter 'solver.vsolver.remove_rigid_rotation', default to on, indicate whether to remove the rigid body rotation. For free-slip model, this parameter should be on. For model with imposed plate velocity, it is advised to turn off this parameter. | 10 October 2007, 20:11:00 UTC |
| ee814bc | Eh Tan | 05 October 2007, 20:02:02 UTC | Renamed excludeTop -> exclude_top, and excludeBottom -> exclude_bottom. (No other CitcomS parameter uses CamelCase.) Reworked the interaction of initial temperature and coupling. Created a new parameter exchange_initial_temperature. | 05 October 2007, 20:02:02 UTC |
| b0f818a | Eh Tan | 05 October 2007, 20:00:32 UTC | Strengthen the default convergence criterion for the 3rd iteration in compressible cg solver | 05 October 2007, 20:00:32 UTC |
| 72ad845 | Eh Tan | 05 October 2007, 19:58:54 UTC | Disable a debugging output | 05 October 2007, 19:58:54 UTC |
| 4bcf0ad | Eh Tan | 05 October 2007, 19:58:31 UTC | Add licence text to the multi-couplers | 05 October 2007, 19:58:31 UTC |
| 820d139 | Eh Tan | 05 October 2007, 19:57:48 UTC | Turn off filter_temp by default since it's not in the energy equation | 05 October 2007, 19:57:48 UTC |
| 4e87245 | Thorsten Becker | 04 October 2007, 19:35:04 UTC | Fxied material assignment bug in PDEPV (0 vs. 1 array issue...) | 04 October 2007, 19:35:04 UTC |
| cc73a80 | Eh Tan | 01 October 2007, 20:38:22 UTC | Updated the cookbook scripts | 01 October 2007, 20:38:22 UTC |
| f4f2b13 | Eh Tan | 01 October 2007, 19:26:40 UTC | Added Cookbook8 for compressible model + geoid + checkpoint + vsolver tuning | 01 October 2007, 19:26:40 UTC |
| ae31e95 | Thorsten Becker | 28 September 2007, 23:36:15 UTC | Fixed restart I/O bug in Output_gzdir. | 28 September 2007, 23:36:15 UTC |
| e429e26 | Eh Tan | 27 September 2007, 19:33:57 UTC | Added function prototype and fixed a few errors | 27 September 2007, 19:33:57 UTC |
| a79e4a9 | Eh Tan | 27 September 2007, 19:07:57 UTC | Shrink the size of checkpoint files | 27 September 2007, 19:07:57 UTC |
| 02acf94 | Eh Tan | 27 September 2007, 19:07:33 UTC | Enable coor_refine for regional model, only radial coordinate is refined | 27 September 2007, 19:07:33 UTC |
| e29d3c2 | Eh Tan | 25 September 2007, 19:40:08 UTC | Fixed a bug in vtkio | 25 September 2007, 19:40:08 UTC |
| f392355 | Eh Tan | 25 September 2007, 01:31:30 UTC | Introducing choice of reference state: When solver.param.reference_state=0, the reference state is read from a file (solver.param.refstate_file) When solver.param.reference_state=1 (default), the reference state is calculated using Adams-Williamson equation of state. | 25 September 2007, 01:31:30 UTC |
| 4170440 | Eh Tan | 24 September 2007, 21:29:24 UTC | Detect the presence of libz and enable ascii-gz at configure time | 24 September 2007, 21:29:24 UTC |
| 95c453f | Eh Tan | 24 September 2007, 21:28:26 UTC | Comment out varialbe thermal conductivity. Removed unused struct members. | 24 September 2007, 21:28:26 UTC |
| e4cd242 | Eh Tan | 24 September 2007, 21:28:05 UTC | Multiply rho*cp to DT/dt | 24 September 2007, 21:28:05 UTC |
| 6a4ff8e | Eh Tan | 19 September 2007, 20:34:37 UTC | Don't write to log file, since only rank-0 proc can access it | 19 September 2007, 20:34:37 UTC |
| 37b7dd0 | Eh Tan | 19 September 2007, 20:34:22 UTC | Set default value for tracer/composition flags earlier | 19 September 2007, 20:34:22 UTC |
| a3387ca | Eh Tan | 19 September 2007, 20:33:42 UTC | Shrink the size of arrays | 19 September 2007, 20:33:42 UTC |
| 3488a3f | Eh Tan | 19 September 2007, 20:31:11 UTC | Shrink the size of arrays | 19 September 2007, 20:31:11 UTC |
| 37e37f8 | Eh Tan | 19 September 2007, 20:30:44 UTC | Fixed uninit'd heat flux and geoid arrays bugs, as reported by valgrind | 19 September 2007, 20:30:44 UTC |
| dec899b | Thorsten Becker | 19 September 2007, 00:28:00 UTC | Minor bug fix in Output_gzidir, output_heating function didn't work. | 19 September 2007, 00:28:00 UTC |
| c89da81 | Eh Tan | 18 September 2007, 23:08:06 UTC | Fixed a memory bug in checkpoint | 18 September 2007, 23:08:06 UTC |
| 995fff8 | Eh Tan | 18 September 2007, 23:07:48 UTC | Setup composition for regional model | 18 September 2007, 23:07:48 UTC |
| f23ffbf | Leif Strand | 18 September 2007, 01:52:50 UTC | Fix for Issue129: "CitcomS configured without exchanger still links with -lExchanger". Also, use CIT_HEADER_MPI so that configuring --with-exchanger using MPICH2 works (see Issue14 and Issue57). | 18 September 2007, 01:52:50 UTC |
| a2fd2a4 | Eh Tan | 17 September 2007, 20:30:30 UTC | Generalized init. composition from neighbors for multi-component composition | 17 September 2007, 20:30:30 UTC |
| c10e388 | Eh Tan | 17 September 2007, 19:07:29 UTC | Using neighboring elements to determine the initial composition, if only a few elements are empty. | 17 September 2007, 19:07:29 UTC |
