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https://github.com/jiwoncpark/baobab
06 April 2024, 03:02:03 UTC
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Revision Author Date Message Commit Date
b999683 jiwoncpark 06 February 2020, 23:55:06 UTC Hardcode baobab to generate noiseless images 06 February 2020, 23:55:06 UTC
49cba8b Ji Won Park 06 February 2020, 03:47:08 UTC Merge pull request #43 from jiwoncpark/issue/42 Issue/42 06 February 2020, 03:47:08 UTC
d8e4d64 Sebastian Wagner-Carena 05 February 2020, 17:41:57 UTC added numba to requirements file 05 February 2020, 17:41:57 UTC
38fbf0e Sebastian Wagner-Carena 05 February 2020, 17:32:39 UTC implemented new numba function, tested that they improve evaluation speed, and made sure they still give the same output as scipy functions 05 February 2020, 17:32:39 UTC
5ad9c79 jiwoncpark 05 February 2020, 16:14:25 UTC Merge branch 'master' of https://github.com/jiwoncpark/baobab 05 February 2020, 16:14:25 UTC
7662c05 jiwoncpark 05 February 2020, 16:14:15 UTC Enable user to optionally NOT add noise by setting cfg.image.add_noise to False -- note this is different from setting background_noise to zero as background noise includes sky and readout but not CCD 05 February 2020, 16:14:15 UTC
1780ef2 Ji Won Park 31 January 2020, 19:49:30 UTC Merge pull request #39 from jiwoncpark/issue/38 Issue/38 31 January 2020, 19:49:30 UTC
2cb3d31 jiwoncpark 31 January 2020, 19:48:04 UTC Do not import both tensorflow and torch with init, in case both are not installed 31 January 2020, 19:48:04 UTC
48556ca jiwoncpark 31 January 2020, 19:46:41 UTC Allow null PSF for DC2 verification 31 January 2020, 19:46:41 UTC
a06222f jiwoncpark 31 January 2020, 19:45:48 UTC Export the absolute time delays and corresponding image positions 31 January 2020, 19:45:48 UTC
a74ef75 Sebastian Wagner-Carena 29 January 2020, 01:59:49 UTC all approx distributions implemented and tested 29 January 2020, 01:59:49 UTC
39076bf Sebastian Wagner-Carena 29 January 2020, 00:43:58 UTC fixed lognorm 29 January 2020, 00:43:58 UTC
2fb5429 Sebastian Wagner-Carena 29 January 2020, 00:42:31 UTC pdf now returns 0 when out of bounds for generalized normal 29 January 2020, 00:42:31 UTC
636bd20 jiwoncpark 21 January 2020, 23:57:00 UTC Add missing self argument 21 January 2020, 23:57:00 UTC
cb0eff5 jiwoncpark 21 January 2020, 23:55:39 UTC Allow BaobabConfig to return the noise_kwargs for input into noise model for online data augmentation 21 January 2020, 23:55:39 UTC
db0ce12 jiwoncpark 21 January 2020, 23:46:18 UTC Get image shape from tf.shape() rather than calling tensor's shape method 21 January 2020, 23:46:18 UTC
e6bf6c1 jiwoncpark 21 January 2020, 23:44:31 UTC Modularize some bigger functions and remove extraneous imports 21 January 2020, 23:44:31 UTC
339b332 jiwoncpark 21 January 2020, 23:27:19 UTC Pad image position arrays with zeros at the end, with max size 4 21 January 2020, 23:27:19 UTC
d5ef0e5 jiwoncpark 16 January 2020, 00:21:06 UTC Move velocity dispersion computation out of bnn prior object so it can be imported by h0rton during H0 inference 16 January 2020, 00:21:06 UTC
f1e8ed6 jiwoncpark 20 December 2019, 00:53:05 UTC Separate out lognormal sampler and pdf eval and add logpdf eval for all distributions, with corresponding updates to config files, tests passing 20 December 2019, 00:53:05 UTC
26cda9b jiwoncpark 20 December 2019, 00:52:08 UTC Fix weird line breaks 20 December 2019, 00:52:08 UTC
3217c44 jiwoncpark 19 December 2019, 22:36:09 UTC Add importable dictionary of all distributions with their (ordered) list of hyperparams 19 December 2019, 22:36:09 UTC
16c48fa jiwoncpark 18 December 2019, 00:37:06 UTC Remove printing of metadata columns in the last line, as it's empty if checkpointing interval goes into n_data evenly 18 December 2019, 00:37:06 UTC
431e715 jiwoncpark 17 December 2019, 23:27:26 UTC Move the TF noise test out for now 17 December 2019, 23:27:26 UTC
d9317c0 jiwoncpark 17 December 2019, 23:13:27 UTC Force CPU at test class init 17 December 2019, 23:13:27 UTC
9c66c15 jiwoncpark 17 December 2019, 23:09:01 UTC Check disk space again 17 December 2019, 23:09:01 UTC
e2b6e5f jiwoncpark 17 December 2019, 23:08:28 UTC Restore python image 17 December 2019, 23:08:28 UTC
382b855 jiwoncpark 17 December 2019, 22:52:03 UTC Run each test script manually 17 December 2019, 22:52:03 UTC
e061e9e jiwoncpark 17 December 2019, 22:37:15 UTC Remove unused imports and try running two specific tests 17 December 2019, 22:37:15 UTC
63088f9 jiwoncpark 17 December 2019, 22:27:12 UTC Fix pyasnl version error 17 December 2019, 22:27:12 UTC
a86cfb3 jiwoncpark 17 December 2019, 22:19:49 UTC Pip install silently, without progress bars 17 December 2019, 22:19:49 UTC
283b340 jiwoncpark 17 December 2019, 22:12:32 UTC Try importing each module used by tests 17 December 2019, 22:12:32 UTC
323c8b0 jiwoncpark 17 December 2019, 21:59:52 UTC See which pip3 version is being used and where it is 17 December 2019, 21:59:52 UTC
9917a42 jiwoncpark 17 December 2019, 21:53:00 UTC Remove pip3 freeze as it causes import errors 17 December 2019, 21:53:00 UTC
f81b02f jiwoncpark 17 December 2019, 21:50:20 UTC Update scipy, pandas, matplotlib, astropy before testing that causes segfault 17 December 2019, 21:50:20 UTC
b186bc5 jiwoncpark 17 December 2019, 21:41:21 UTC Update all pip packages in case they are causing the segfault, attempt 2 with sudo permission 17 December 2019, 21:41:21 UTC
a3fa298 jiwoncpark 17 December 2019, 21:36:12 UTC Update all pip packages in case they are causing the segfault 17 December 2019, 21:36:12 UTC
87b11a8 jiwoncpark 17 December 2019, 21:11:26 UTC Have apt install hdf5 libraries rather than hdf5 itself 17 December 2019, 21:11:26 UTC
04065f9 jiwoncpark 17 December 2019, 21:07:44 UTC Have apt install hdf5 rather than pip, as pip doesn't install development headers, attempt 2 17 December 2019, 21:07:44 UTC
6da1d84 jiwoncpark 17 December 2019, 21:05:59 UTC Have apt install hdf5 rather than pip, as pip doesn't install development headers 17 December 2019, 21:05:59 UTC
265300f jiwoncpark 17 December 2019, 03:20:11 UTC Install libhdf5-serial-dev instead 17 December 2019, 03:20:11 UTC
a4c91b1 jiwoncpark 17 December 2019, 03:17:06 UTC Install libhdf5, though travis is using python3.5 somehow 17 December 2019, 03:17:06 UTC
3817552 jiwoncpark 17 December 2019, 03:05:09 UTC Upgrade pip with sudo 17 December 2019, 03:05:09 UTC
d88f6d8 jiwoncpark 17 December 2019, 02:52:03 UTC Do not replace system pip 17 December 2019, 02:52:03 UTC
71a50b8 jiwoncpark 17 December 2019, 02:47:58 UTC Switch from user to sudo 17 December 2019, 02:47:58 UTC
ebdd405 jiwoncpark 17 December 2019, 02:45:46 UTC Update pip for matplotlib 17 December 2019, 02:45:46 UTC
f3496aa jiwoncpark 17 December 2019, 02:41:42 UTC Do not specify wheel url, as it doesn't work on minimal platform 17 December 2019, 02:41:42 UTC
8f416fe jiwoncpark 17 December 2019, 02:36:22 UTC Install setuptools for minimal image 17 December 2019, 02:36:22 UTC
69e929e jiwoncpark 17 December 2019, 02:34:10 UTC Install python3-pip 17 December 2019, 02:34:10 UTC
7b610b8 jiwoncpark 17 December 2019, 02:28:34 UTC Use user flag for pip3 17 December 2019, 02:28:34 UTC
dbac311 jiwoncpark 17 December 2019, 02:27:20 UTC Specify pip3 with minimal image 17 December 2019, 02:27:20 UTC
d4b6aed jiwoncpark 17 December 2019, 02:21:16 UTC Check memory usage and switch to minimal Travis image 17 December 2019, 02:21:16 UTC
c35f4d6 jiwoncpark 17 December 2019, 02:08:50 UTC Specify CPU versions of ML packages 17 December 2019, 02:08:50 UTC
bda51fa jiwoncpark 17 December 2019, 01:56:50 UTC Do not encode torch or tf tests in setup.py, instead only run them in Travis 17 December 2019, 01:56:50 UTC
abff818 jiwoncpark 17 December 2019, 01:56:12 UTC Leave one of read_noise or background_noise in the configs to prevent lenstronomy warning 17 December 2019, 01:56:12 UTC
aada4b6 jiwoncpark 17 December 2019, 01:40:51 UTC Force CPU usage 17 December 2019, 01:40:51 UTC
27c2c77 jiwoncpark 17 December 2019, 01:40:37 UTC Find tests with unittest, since nose hasn't been maintained for a while 17 December 2019, 01:40:37 UTC
c5aab89 jiwoncpark 17 December 2019, 01:22:06 UTC Let pip figure out version number for ml dependencies 17 December 2019, 01:22:06 UTC
7878beb jiwoncpark 17 December 2019, 01:19:04 UTC Do not store ccache and specify ml framework versions 17 December 2019, 01:19:04 UTC
bf17888 jiwoncpark 17 December 2019, 01:01:55 UTC Implement and test selection_utils while updating config files accordingly, tests passing 17 December 2019, 01:01:55 UTC
bfa8ad7 jiwoncpark 17 December 2019, 01:00:50 UTC Clear memory once checkpointed and delegate selection to a separate module 17 December 2019, 01:00:50 UTC
2c77c72 jiwoncpark 17 December 2019, 01:00:13 UTC Remove unused imports 17 December 2019, 01:00:13 UTC
ca83fad jiwoncpark 12 December 2019, 09:37:36 UTC Allow alternate parameter definitions 12 December 2019, 09:37:36 UTC
6b4504d jiwoncpark 10 December 2019, 11:30:12 UTC Remove np array from cov, empirical configs for json serialization, test_generate passing 10 December 2019, 11:30:12 UTC
837a8ff jiwoncpark 10 December 2019, 10:14:18 UTC Attempt to update to_hdf5 to latest generate script, erroring 10 December 2019, 10:14:18 UTC
71e5e68 jiwoncpark 10 December 2019, 10:11:18 UTC Export log into the out_dir for neatness 10 December 2019, 10:11:18 UTC
d90de03 jiwoncpark 10 December 2019, 10:10:46 UTC Attempt to update all notebooks to latest generate script, erroring at json serialization 10 December 2019, 10:10:46 UTC
d12b562 jiwoncpark 10 December 2019, 09:46:47 UTC Update image viz demo to latest baobab 10 December 2019, 09:46:47 UTC
babbdb4 jiwoncpark 10 December 2019, 09:41:45 UTC Update visualize demo to latest baobab diagonal cosmo, updates to other notebooks pending 10 December 2019, 09:41:45 UTC
f261754 jiwoncpark 10 December 2019, 09:41:14 UTC Use dictionary indexing, not class attribute indexing in case argument is python's native dict 10 December 2019, 09:41:14 UTC
a2fd3aa jiwoncpark 10 December 2019, 09:40:12 UTC Export baobab log in the beginning and checkpoint metadata saving 10 December 2019, 09:40:12 UTC
99c3991 jiwoncpark 10 December 2019, 09:39:35 UTC Set aside calculation of cosmography-related observables, which is optional 10 December 2019, 09:39:35 UTC
6c737f6 jiwoncpark 10 December 2019, 09:38:40 UTC Allow user to specify min difference in z_src and z_lens 10 December 2019, 09:38:40 UTC
1afff6f jiwoncpark 10 December 2019, 09:38:02 UTC Do not inplace-modify hyperparams dict passed as argument 10 December 2019, 09:38:02 UTC
b292d4b jiwoncpark 01 December 2019, 23:41:35 UTC Enable option to bypass velocity dispersion calculation, which slows down Baobab by a factor of 3.5 and is not required for BNN training 01 December 2019, 23:41:35 UTC
218eacf jiwoncpark 01 December 2019, 23:36:57 UTC Remove TF test from torch test module 01 December 2019, 23:36:57 UTC
5b163f5 jiwoncpark 01 December 2019, 23:36:42 UTC Test TF noise, which passes locally with GPU but fails with setup.py test 01 December 2019, 23:36:42 UTC
ac07921 jiwoncpark 01 December 2019, 23:35:42 UTC Enable total magnification cut 01 December 2019, 23:35:42 UTC
6329ba2 jiwoncpark 01 December 2019, 23:05:46 UTC Separate out utility modules from generate script 01 December 2019, 23:05:46 UTC
a1118b8 jiwoncpark 01 December 2019, 09:56:27 UTC Compare and individually test lenstronomy, torch, and tf noise addition 01 December 2019, 09:56:27 UTC
4e6c466 jiwoncpark 01 December 2019, 09:55:57 UTC Implement noise modules for lenstronomy, torch, and tf 01 December 2019, 09:55:57 UTC
05f94a7 jiwoncpark 01 December 2019, 09:55:14 UTC Update RTD and setuptools for data_augmentation package 01 December 2019, 09:55:14 UTC
a6a5616 jiwoncpark 01 December 2019, 09:54:19 UTC Check in minor updates to test_distributions 01 December 2019, 09:54:19 UTC
efc135d jiwoncpark 22 November 2019, 22:36:38 UTC Export columns corresponding to sampled kwargs for instantiated BNNPrior class 22 November 2019, 22:36:38 UTC
6ed2b42 jiwoncpark 21 November 2019, 03:07:56 UTC Begin to validate kinematics cfg 21 November 2019, 03:07:56 UTC
a5eeabd jiwoncpark 21 November 2019, 03:07:37 UTC Replace deprecated LensProp with TDCosmography 21 November 2019, 03:07:37 UTC
a2a3741 jiwoncpark 21 November 2019, 03:07:03 UTC Clean up unused functions and imports 21 November 2019, 03:07:03 UTC
da9b70e jiwoncpark 20 November 2019, 21:24:29 UTC Merge branch 'issue/26' 20 November 2019, 21:24:29 UTC
a84aa3e jiwoncpark 20 November 2019, 21:23:10 UTC Visualize metdata and images for DiagonalCosmoBNNPrior 20 November 2019, 21:23:10 UTC
a59aea6 jiwoncpark 20 November 2019, 21:22:12 UTC Check in sample configs around the truth of a Rung 1 lens 20 November 2019, 21:22:12 UTC
9e36549 jiwoncpark 20 November 2019, 21:21:31 UTC Sample redshift without replacement to prevent z_lens and z_src being the same 20 November 2019, 21:21:31 UTC
78b254a jiwoncpark 20 November 2019, 20:40:37 UTC Remove param_list and instead export all the properties. Necessary as upcoming BNN prior classes will have additional columns and we don't want to manually keep track of them. 20 November 2019, 20:40:37 UTC
90c4a34 jiwoncpark 14 November 2019, 17:21:08 UTC Implement and test DiagonalCosmoBNNPrior, tests passing 14 November 2019, 17:21:08 UTC
facb5f5 jiwoncpark 09 November 2019, 01:08:41 UTC Update installation instructions 09 November 2019, 01:08:41 UTC
75be034 jiwoncpark 09 November 2019, 01:07:52 UTC Set up coveralls 09 November 2019, 01:07:52 UTC
12f67fb jiwoncpark 09 November 2019, 00:54:11 UTC Enforce requirements.txt for pip install 09 November 2019, 00:54:11 UTC
827d078 jiwoncpark 09 November 2019, 00:34:25 UTC Safeguard against negative pixel values by flooring the image array at 0 09 November 2019, 00:34:25 UTC
ebc689b jiwoncpark 09 November 2019, 00:31:53 UTC Add cells for visualizing order 100 images at a time 09 November 2019, 00:31:53 UTC
b2370f4 jiwoncpark 09 November 2019, 00:14:28 UTC Define external shear wrt the lens mass center 09 November 2019, 00:14:28 UTC
ee8f30f jiwoncpark 09 November 2019, 00:05:11 UTC Update external shear angle range to lie between -pi/2 and pi/2 09 November 2019, 00:05:11 UTC
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