| 065177b | Hervé MENAGER | 18 November 2016, 13:17:31 UTC | update YAML mapping file to the new format, add "text" pseudo-format | 18 November 2016, 13:17:31 UTC |
| 66cb584 | Hervé MENAGER | 17 November 2016, 22:16:56 UTC | improve logging | 17 November 2016, 22:16:56 UTC |
| 023daa1 | Hervé MENAGER | 17 November 2016, 22:15:42 UTC | improve tool duplicates detection | 17 November 2016, 22:15:42 UTC |
| f27ba50 | Hervé MENAGER | 17 November 2016, 21:35:51 UTC | do not try to conver to URIs EDAM formats if they are set to None | 17 November 2016, 21:35:51 UTC |
| 54dbe33 | Hervé MENAGER | 17 November 2016, 21:34:45 UTC | correct source mappings for data handles and descriptions | 17 November 2016, 21:34:45 UTC |
| 0960c7b | Hervé MENAGER | 17 November 2016, 21:31:58 UTC | manage outputs which refer to input datatypes with a quickfix we currently do not give them meaningful EDAM references, until the Galaxy API provides the necessary format source information from the XML. | 17 November 2016, 21:31:58 UTC |
| 3a87169 | Hervé MENAGER | 17 November 2016, 21:29:36 UTC | simplify debug print | 17 November 2016, 21:29:36 UTC |
| a6a2034 | Hervé MENAGER | 17 November 2016, 21:28:07 UTC | ask again the password if authentication fails | 17 November 2016, 21:28:07 UTC |
| dd73cb0 | Hervé MENAGER | 17 November 2016, 21:25:26 UTC | escape tool IDs when building the home URL | 17 November 2016, 21:25:26 UTC |
| 603e251 | Hervé MENAGER | 17 November 2016, 21:24:15 UTC | add versionID which is the one used by bio.tools DB | 17 November 2016, 21:24:15 UTC |
| 8d448a7 | Hervé MENAGER | 17 November 2016, 21:23:15 UTC | fix missing descriptions in Galaxy tools with a dummy one. | 17 November 2016, 21:23:15 UTC |
| 0746eb6 | Hervé MENAGER | 15 November 2016, 10:41:58 UTC | only delete the bio.tools descriptions belonging to 'resourcename' - leave the bio.tools descriptions which do not belong to the collection 'resourcename' - ressourcename->resourcename | 15 November 2016, 10:41:58 UTC |
| 394dd31 | Hervé MENAGER | 15 November 2016, 10:38:53 UTC | correct error logging statement | 15 November 2016, 10:38:53 UTC |
| 4480acd | Hervé MENAGER | 14 November 2016, 16:07:52 UTC | log delete responses | 14 November 2016, 16:07:52 UTC |
| 6d478c1 | Hervé MENAGER | 14 November 2016, 16:00:54 UTC | modify delete url due to a bio.tools bug the one specified before should work, but not anymore, so I'm copying the one used in the JS code. | 14 November 2016, 16:00:54 UTC |
| 6bfb166 | Hervé Ménager | 21 October 2016, 19:04:12 UTC | modify regate and remag to include term labels EDAM terms should be replaced by the bio.tools server but we provide it for JSON readability purpose. | 21 October 2016, 19:04:12 UTC |
| 7710ca1 | Hervé Ménager | 19 October 2016, 15:43:35 UTC | more package setup work here goal is `pip install regate` | 19 October 2016, 15:43:35 UTC |
| 23110e2 | Hervé Ménager | 19 October 2016, 14:02:04 UTC | multiple packaging improvements, plus start pip-ing the package (test) | 19 October 2016, 14:02:04 UTC |
| b368159 | Hervé Ménager | 17 October 2016, 14:23:10 UTC | Merge branch 'master' into dev_bio_tools | 17 October 2016, 14:23:10 UTC |
| bcfacc2 | Hervé Ménager | 17 October 2016, 14:17:16 UTC | upgrade setuptools before installing requirements | 17 October 2016, 14:17:16 UTC |
| 40a962c | Hervé Ménager | 17 October 2016, 14:14:46 UTC | setuptools has to be upgraded before to launch pip of course :( | 17 October 2016, 14:14:46 UTC |
| 831847e | Hervé Ménager | 17 October 2016, 14:09:59 UTC | add minimal version of setuptools required by html5lib required by rdflib | 17 October 2016, 14:09:59 UTC |
| f7a0baa | Hervé Ménager | 17 October 2016, 11:25:41 UTC | upload the JSON instead of XML because there is currently no support for XML in bio.tools. | 17 October 2016, 11:25:41 UTC |
| 69f09ec | Hervé Ménager | 17 October 2016, 11:25:21 UTC | tool ID is mandatory. | 17 October 2016, 11:25:21 UTC |
| 6d02488 | Hervé Ménager | 17 October 2016, 11:21:54 UTC | do not specify the sourceRegistry sourceRegistry is a string of 50 chars or less now... FIXME: find the right string. | 17 October 2016, 11:21:54 UTC |
| 604e53c | Hervé Ménager | 17 October 2016, 11:17:54 UTC | colons aren't authorized anymore in tool names. | 17 October 2016, 11:17:54 UTC |
| bd32564 | Hervé Ménager | 17 October 2016, 11:14:03 UTC | "platform" format has changed. | 17 October 2016, 11:14:03 UTC |
| 151aa8f | Hervé Ménager | 17 October 2016, 11:11:28 UTC | disable "unsecure https" messages generated by requests library. | 17 October 2016, 11:11:28 UTC |
| a67a641 | Hervé Ménager | 13 October 2016, 22:05:15 UTC | update upload to continue to next tool if current one is not valid. | 13 October 2016, 22:05:15 UTC |
| a88ff0e | Hervé Ménager | 13 October 2016, 22:04:13 UTC | update "delete all existing services" part to new API | 13 October 2016, 22:04:13 UTC |
| b73d70e | Hervé Ménager | 13 October 2016, 22:03:20 UTC | update authentication to use rest-auth | 13 October 2016, 22:03:20 UTC |
| ad7680f | Hervé Ménager | 13 October 2016, 22:02:16 UTC | allow inputs with no clear data types (for now) | 13 October 2016, 22:02:16 UTC |
| af96d7a | Hervé Ménager | 13 October 2016, 22:01:03 UTC | correct the construction of the Galaxy link in tool description | 13 October 2016, 22:01:03 UTC |
| 0224d68 | Hervé Ménager | 12 September 2016, 13:48:14 UTC | add minimal Travis config file. | 12 September 2016, 13:48:14 UTC |
| bfa4dac | Olivia Doppelt-Azeroual | 12 September 2016, 08:51:10 UTC | debug xml file format | 12 September 2016, 08:51:10 UTC |
| cd50439 | Olivia Doppelt-Azeroual | 08 September 2016, 15:47:17 UTC | documentation addons | 08 September 2016, 15:47:17 UTC |
| fc7cdbe | Olivia Doppelt-Azeroual | 08 September 2016, 15:46:18 UTC | documentation addons | 08 September 2016, 15:46:18 UTC |
| c749d31 | Olivia Doppelt-Azeroual | 08 September 2016, 15:44:42 UTC | documentation addons | 08 September 2016, 15:44:42 UTC |
| 66c71c2 | Hervé Ménager | 05 August 2016, 11:47:56 UTC | correct python path in regate.py script | 05 August 2016, 11:47:56 UTC |
| d36e14b | Hervé Ménager | 05 August 2016, 08:39:56 UTC | correct syntax error in regate.py script | 05 August 2016, 08:39:56 UTC |
| 4fe8188 | Olivia Doppelt-Azeroual | 22 June 2016, 14:03:59 UTC | adaptation for XML validation based on bio.tools xsd version 1.4 | 22 June 2016, 14:03:59 UTC |
| bc5a166 | Olivia Doppelt-Azeroual | 22 June 2016, 10:11:56 UTC | modification of the accessibility variable | 22 June 2016, 10:11:56 UTC |
| 9a8d8cc | Olivia Doppelt-Azeroual | 03 June 2016, 13:33:09 UTC | warning addition if same tool id and same version are detected in a galaxy instance | 03 June 2016, 13:33:09 UTC |
| 0108db7 | odoppelt | 03 June 2016, 10:27:05 UTC | remove suffix value from regate.ini | 03 June 2016, 10:27:05 UTC |
| 55a434b | Olivia Doppelt-Azeroual | 01 June 2016, 16:01:45 UTC | code cleanup | 01 June 2016, 16:01:45 UTC |
| c7bd410 | odoppelt | 01 June 2016, 15:17:26 UTC | Update regate.ini | 01 June 2016, 15:17:26 UTC |
| 942889f | Olivia Doppelt-Azeroual | 01 June 2016, 15:23:12 UTC | modification of the section for prefix and suffix conf variables | 01 June 2016, 15:23:12 UTC |
| 5cd0cfc | Olivia Doppelt-Azeroual | 01 June 2016, 15:19:07 UTC | resolve conflict with data/regate.ini | 01 June 2016, 15:19:07 UTC |
| 63a76cf | Olivia Doppelt-Azeroual | 01 June 2016, 15:11:45 UTC | Merge branch 'master' of https://github.com/C3BI-pasteur-fr/ReGaTE | 01 June 2016, 15:11:45 UTC |
| dbbcff5 | Olivia Doppelt-Azeroual | 01 June 2016, 15:03:52 UTC | 1/addition of prefix and suffix for biotools name tag. They are not mandatory but are aimed to tag tools from galaxys 2/the xml and json filenames are now toolname_version | 01 June 2016, 15:03:52 UTC |
| c82580b | odoppelt | 01 June 2016, 07:57:41 UTC | Update regate.ini | 01 June 2016, 07:57:41 UTC |
| 223516c | Olivia Doppelt-Azeroual | 31 May 2016, 09:03:10 UTC | adaptation of galaxy biotools.py in regate | 31 May 2016, 09:03:10 UTC |
| 79e6b74 | fmareuil | 17 March 2016, 16:07:03 UTC | typo | 17 March 2016, 16:07:03 UTC |
| 3b147b7 | Fabien Mareuil | 19 January 2016, 10:28:40 UTC | correction of the get_source_registry function | 19 January 2016, 10:28:40 UTC |
| 8e57478 | Fabien Mareuil | 19 January 2016, 09:06:14 UTC | bug correction json to xml in the push_to_elixir function | 19 January 2016, 09:06:14 UTC |
| 39ab754 | Fabien Mareuil | 18 January 2016, 21:26:41 UTC | documentation for requirement installation | 18 January 2016, 21:26:41 UTC |
| 0fd6c7d | Fabien Mareuil | 18 January 2016, 12:51:22 UTC | add lxml requirement | 18 January 2016, 12:51:22 UTC |
| c851ab3 | fmareuil | 09 December 2015, 15:04:39 UTC | bug correction: xml name is now a mapping of the uniq galaxy id | 09 December 2015, 15:04:39 UTC |
| 79b44a8 | fmareuil | 09 December 2015, 10:22:40 UTC | new template XML and verification schema with xsd | 09 December 2015, 10:22:40 UTC |
| 663f86c | fmareuil | 04 December 2015, 09:43:13 UTC | documentation requirement modification | 04 December 2015, 09:43:13 UTC |
| a57f088 | fmareuil | 04 December 2015, 09:34:13 UTC | correction version number | 04 December 2015, 09:34:13 UTC |
| 009d955 | fmareuil | 03 December 2015, 15:59:06 UTC | Merge branch 'master' of https://github.com/C3BI-pasteur-fr/ReGaTE | 03 December 2015, 15:59:06 UTC |
| f3b388f | fmareuil | 03 December 2015, 15:48:11 UTC | doc correction and rm of deprecated import2er.py script | 03 December 2015, 15:48:11 UTC |
| 1cdfcfb | fmareuil | 03 December 2015, 15:24:50 UTC | pylint validation and update, and creation of a Config class to check options in the config.ini file | 03 December 2015, 15:24:50 UTC |
| 20ae9f7 | fmareuil | 02 December 2015, 16:07:54 UTC | documentation update | 02 December 2015, 16:07:54 UTC |
| b95b4b0 | fmareuil | 02 December 2015, 15:10:08 UTC | adding requirement | 02 December 2015, 15:10:08 UTC |
| f28f4a8 | fmareuil | 01 December 2015, 19:47:55 UTC | bug correction and configparser evolution for remag and regate | 01 December 2015, 19:47:55 UTC |
| 416c78e | Hervé Ménager | 01 December 2015, 12:47:51 UTC | Correct accents on authors | 01 December 2015, 12:47:51 UTC |
| cf2f94f | Hervé Ménager | 01 December 2015, 12:44:39 UTC | add link to EDAM ontology webpage | 01 December 2015, 12:44:39 UTC |
| 4df424c | Hervé Ménager | 01 December 2015, 12:38:52 UTC | update registry URL | 01 December 2015, 12:38:52 UTC |
| b574f2a | Fabien Mareuil | 23 November 2015, 20:51:42 UTC | configparser adaptation for regate.py with a list of tools which will not be taken into account | 23 November 2015, 20:51:42 UTC |
| bae2359 | Fabien Mareuil | 23 November 2015, 18:09:40 UTC | adding of the configparser method and override of the bioblend DatatypesClien to add a get_edam_formats method | 23 November 2015, 18:09:40 UTC |
| f64d832 | Fabien Mareuil | 20 November 2015, 18:40:23 UTC | new setup.py to replace prefix template and to use a .ini file | 20 November 2015, 18:40:23 UTC |
| d490c7e | fmareuil | 20 November 2015, 09:10:16 UTC | adding of a config.ini file first commit | 20 November 2015, 09:10:16 UTC |
| fe4c652 | fmareuil | 10 November 2015, 19:26:18 UTC | new config file developpement | 10 November 2015, 19:26:18 UTC |
| c98572e | Hervé Ménager | 05 November 2015, 14:36:05 UTC | correct path to the template, take 2 fixes issue #2 | 05 November 2015, 14:36:05 UTC |
| e5ea09b | Hervé Ménager | 05 November 2015, 14:30:21 UTC | fix path to cheetah template as stated in issue #2 | 05 November 2015, 14:30:21 UTC |
| 0a04c62 | Hervé Ménager | 05 November 2015, 13:06:59 UTC | add cheetah requirement as referenced in issue #1 | 05 November 2015, 13:06:59 UTC |
| 418308d | Fabien Mareuil | 04 November 2015, 16:20:01 UTC | new unittest | 04 November 2015, 16:20:01 UTC |
| 6be6cff | Fabien Mareuil | 30 October 2015, 20:45:57 UTC | new write_json function with unittest | 30 October 2015, 20:45:57 UTC |
| 5a85311 | fmareuil | 30 October 2015, 18:48:13 UTC | test new branche | 30 October 2015, 18:48:13 UTC |
| 4617bb9 | fmareuil | 30 October 2015, 15:17:49 UTC | remove write json file | 30 October 2015, 15:17:49 UTC |
| 4450097 | fmareuil | 30 October 2015, 09:26:54 UTC | commit fo pycharmm | 30 October 2015, 09:26:54 UTC |
| fef9ad6 | fmareuil | 30 October 2015, 09:11:22 UTC | merge | 30 October 2015, 09:11:22 UTC |
| abb1cf0 | fmareuil | 30 October 2015, 09:07:20 UTC | template xml optimization | 30 October 2015, 09:07:20 UTC |
| 036f5ac | fmareuil | 30 October 2015, 09:06:52 UTC | template xml optimization | 30 October 2015, 09:06:52 UTC |
| ed7b6f0 | Olivia Doppelt-Azeroual | 29 October 2015, 11:36:48 UTC | addition of logger addition of generic edam data and format instead of NONE Some testing are still required | 29 October 2015, 11:36:48 UTC |
| 8b828e6 | fmareuil | 28 October 2015, 15:57:29 UTC | cheetah xml templating | 28 October 2015, 15:57:29 UTC |
| 3be3d9d | fmareuil | 23 October 2015, 15:58:12 UTC | first unittest | 23 October 2015, 15:58:12 UTC |
| 94284d0 | Olivia Doppelt-Azeroual | 22 October 2015, 16:25:59 UTC | adaptation of the JSON for registry new format completion of the EDAM data managment | 22 October 2015, 16:25:59 UTC |
| 0e98899 | odoppelt | 04 August 2015, 21:48:20 UTC | Update remag.rst | 04 August 2015, 21:48:20 UTC |
| c703b1c | odoppelt | 04 August 2015, 21:47:49 UTC | Update remag.rst | 04 August 2015, 21:47:49 UTC |
| c4c4609 | odoppelt | 04 August 2015, 21:46:04 UTC | Update remag.rst | 04 August 2015, 21:46:04 UTC |
| ba820f4 | odoppelt | 04 August 2015, 21:41:18 UTC | Update regate.rst | 04 August 2015, 21:41:18 UTC |
| 6d88514 | odoppelt | 04 August 2015, 21:37:49 UTC | Update regate.rst | 04 August 2015, 21:37:49 UTC |
| 95934a1 | odoppelt | 04 August 2015, 21:21:09 UTC | Update import.rst | 04 August 2015, 21:21:09 UTC |
| ee6f6b1 | odoppelt | 04 August 2015, 21:19:48 UTC | Update index.rst | 04 August 2015, 21:19:48 UTC |
| a212f75 | odoppelt | 04 August 2015, 21:17:46 UTC | Update installation.rst | 04 August 2015, 21:17:46 UTC |
| cf5648f | odoppelt | 04 August 2015, 21:16:41 UTC | Update installation.rst | 04 August 2015, 21:16:41 UTC |
| 99c5cfd | odoppelt | 15 July 2015, 09:34:34 UTC | Update index.rst | 15 July 2015, 09:34:34 UTC |
