https://github.com/CostelloLab/GSEA-InContext

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Revision Author Date Message Commit Date
6975c89 Update README.rst 26 October 2018, 03:02:54 UTC
3e1ffa5 Change to beta-binomial distribution 01 April 2018, 01:08:43 UTC
9abd23c Add Synapse link to README 10 February 2018, 03:41:43 UTC
ada6ce2 Add preprint to README 04 February 2018, 21:58:04 UTC
9fba4ae GSEAPreranked Kegg results 04 February 2018, 21:53:27 UTC
84500b1 GSEA-InContext Kegg results 04 February 2018, 21:53:13 UTC
5659721 More README cleanup 04 February 2018, 20:04:41 UTC
dca3a8a GSEAPreranked q-vals from paper 04 February 2018, 19:59:03 UTC
2d69909 GSEAPreranked NES from paper 04 February 2018, 19:58:52 UTC
be84881 GSEAInContext q-vals from paper 04 February 2018, 19:58:37 UTC
ba2d2b6 GSEAInContext NES from paper 04 February 2018, 19:58:19 UTC
68a8689 Cleanup examples 04 February 2018, 19:57:35 UTC
9dab034 More README edits 02 February 2018, 21:06:25 UTC
cc9c2b7 README and other cleanup 02 February 2018, 21:04:27 UTC
a4644de Smooth gene-specific distribution with Gaussians 23 January 2018, 15:33:30 UTC
149f830 Merge pull request #2 from CostelloLab/es-and-mcf7-data ES and MCF7 data 18 January 2018, 18:25:13 UTC
0bbab88 MCF7 background expts data 17 January 2018, 10:24:57 UTC
ac1c3a0 Fix ES score indices 17 January 2018, 10:24:43 UTC
96ee4a2 Merge pull request #1 from CostelloLab/initial_setup Add new type of permutation for GSEA 17 January 2018, 08:27:56 UTC
97936da Add rnk files 17 January 2018, 08:24:03 UTC
86aeaf6 Load background ranked lists 15 January 2018, 00:43:55 UTC
a3e71b2 New class, initial setup 14 January 2018, 01:18:26 UTC
033b7b8 unuse code 05 January 2018, 14:58:02 UTC
1190e93 keyword order 05 January 2018, 14:31:05 UTC
cbf26b8 docs 05 January 2018, 14:30:42 UTC
10e4adf mem overflow in GSEA 05 January 2018, 09:24:57 UTC
b3730d0 fixed bug 04 January 2018, 07:28:56 UTC
d72b9a8 Merge branch 'master' of https://github.com/BioNinja/GSEApy 04 January 2018, 07:04:42 UTC
73e425d block computing 04 January 2018, 07:04:01 UTC
c1504c4 0.9.3 04 January 2018, 04:54:02 UTC
908fb12 typo 04 January 2018, 04:48:51 UTC
3040efc memory overflow 04 January 2018, 04:40:11 UTC
926acb3 replot fignum 02 January 2018, 11:00:14 UTC
cd32287 docs 02 January 2018, 05:40:59 UTC
1be77aa docs 29 December 2017, 10:53:10 UTC
395cd67 naming 29 December 2017, 10:25:05 UTC
d9a7319 add no_plot keyword to skip plotting, which decrease running time 29 December 2017, 10:10:33 UTC
6f884a9 update test 29 December 2017, 05:25:34 UTC
9e6f5c8 test doc 29 December 2017, 03:46:09 UTC
51efeb0 comparison ssgsea with gsva(method='ssgsea') 29 December 2017, 02:33:54 UTC
b955c7a comparison of ssgsea 28 December 2017, 13:58:52 UTC
b3d16e0 0.9.2 28 December 2017, 13:37:23 UTC
accaea9 naming 28 December 2017, 06:53:50 UTC
83af7cf extra log 28 December 2017, 04:33:11 UTC
f43ffad import 28 December 2017, 04:19:08 UTC
51ca791 minor 28 December 2017, 04:14:13 UTC
f9d0d76 minor 28 December 2017, 03:34:42 UTC
02b30be minor 28 December 2017, 02:37:13 UTC
b486bdf input optimized 27 December 2017, 14:39:34 UTC
88a4546 Merge branch 'master' into dev 27 December 2017, 07:18:58 UTC
87d2212 PEP8 27 December 2017, 07:18:23 UTC
f88e3b8 Merge branch 'dev' 26 December 2017, 05:34:39 UTC
92c142e PEP8 26 December 2017, 05:25:03 UTC
8c42ba7 PEP8 26 December 2017, 05:17:32 UTC
689f7f4 .idea 26 December 2017, 05:17:08 UTC
c6568cc delete notebook 25 December 2017, 13:51:02 UTC
9118a68 es algo 2d optimized 25 December 2017, 12:31:55 UTC
b3a1583 docs 25 December 2017, 12:31:30 UTC
d2e2c51 minor 25 December 2017, 08:26:56 UTC
bb48ca9 delete 25 December 2017, 06:05:02 UTC
20d3e62 typo 25 December 2017, 06:02:26 UTC
e75ef0b syntax 25 December 2017, 05:45:26 UTC
59e0cc5 stack overflow 25 December 2017, 04:42:10 UTC
ede2cea 0.9.1 24 December 2017, 09:06:40 UTC
8752b3e format log 24 December 2017, 09:06:29 UTC
483b0f4 minor fix 24 December 2017, 08:46:30 UTC
de31c13 done 24 December 2017, 08:25:02 UTC
efce9d5 idea on multiprocessing ssgsea, but not working 24 December 2017, 07:54:24 UTC
ede1af3 clear expression 24 December 2017, 07:53:47 UTC
219239a docs 24 December 2017, 07:53:19 UTC
1b8c262 ssgsea multiprocessing 24 December 2017, 05:30:51 UTC
0a7da01 divide zeoro warning 24 December 2017, 05:07:28 UTC
ca394c2 README 16 December 2017, 07:36:53 UTC
d14ac62 README 16 December 2017, 07:36:35 UTC
7ae54ce docs 14 December 2017, 14:04:15 UTC
dbc9dff drop multiprocessing 14 December 2017, 13:43:53 UTC
e0c22b1 load_gmt() bug fixed: 13 December 2017, 05:41:47 UTC
fab1088 enrichr input format fixed 13 December 2017, 04:02:29 UTC
1a72bac CLI docs 12 December 2017, 14:50:47 UTC
81d9970 numpy >=1.13.0 12 December 2017, 14:38:40 UTC
82c11e3 os.path 12 December 2017, 14:36:10 UTC
810230f docs 12 December 2017, 14:35:27 UTC
f2908db Merge branch 'master' of https://github.com/BioNinja/GSEApy 12 December 2017, 09:55:13 UTC
ddec35d log 12 December 2017, 09:54:49 UTC
4c16384 unindented docs 12 December 2017, 08:18:38 UTC
31a13a5 docs 12 December 2017, 08:16:18 UTC
431244d merge 12 December 2017, 08:14:57 UTC
66e1318 docs update 12 December 2017, 08:09:38 UTC
8d7a498 update docs 12 December 2017, 05:43:29 UTC
0b6a8f9 improve logger 12 December 2017, 05:21:25 UTC
4fd43e9 update test cmd 12 December 2017, 05:20:55 UTC
518255c docs update 11 December 2017, 13:04:36 UTC
a0ab389 Merge branch 'v0.9.0dev' 11 December 2017, 03:01:44 UTC
40fed55 test update 11 December 2017, 02:59:54 UTC
e746b61 docs update 11 December 2017, 02:59:37 UTC
2ba3692 no message 10 December 2017, 15:42:09 UTC
ca9bc16 prepare release for next generation gseapy 10 December 2017, 08:46:58 UTC
8cb2ff5 add gmt parser to GSEA class 10 December 2017, 06:12:16 UTC
283d428 logger init 10 December 2017, 06:11:38 UTC
9ad7cda indentation 09 December 2017, 09:29:05 UTC
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