| 93cd15a | niklasneubrand | 17 August 2023, 09:34:56 UTC | Improved arCopybenchmarkModels to handle chars, strings and cells | 17 August 2023, 09:34:56 UTC |
| d21bfdf | niklasneubrand | 14 August 2023, 07:15:20 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 14 August 2023, 07:15:20 UTC |
| e8dc2c7 | niklasneubrand | 14 August 2023, 07:14:35 UTC | Extension and cleanup of arCopyBenchmarkModels | 14 August 2023, 07:14:35 UTC |
| 3c44785 | niklasneubrand | 14 August 2023, 07:05:24 UTC | Bugfix in compilation mode 'core'. Now Results are saved. | 14 August 2023, 07:05:24 UTC |
| 74cfa0c | Timo Rachel | 11 August 2023, 11:00:07 UTC | bugfix arSimuData and update pleAssessIdentifibility.m | 11 August 2023, 11:00:07 UTC |
| 2562d3f | Timo Rachel | 08 August 2023, 19:39:51 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 08 August 2023, 19:39:51 UTC |
| 92b75a9 | Timo Rachel | 08 August 2023, 19:39:36 UTC | new function pleAssessIdentifibility and grad_tresh in PLEInit changed | 08 August 2023, 19:39:36 UTC |
| c63b3c8 | Timo Rachel | 08 August 2023, 19:38:56 UTC | new function pleAssessIdentifibility and grad_tresh in PLEInit changed | 08 August 2023, 19:38:56 UTC |
| 5d943c7 | niklasneubrand | 04 August 2023, 13:26:02 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 04 August 2023, 13:26:02 UTC |
| 8a4625a | niklasneubrand | 04 August 2023, 13:24:22 UTC | Minor fix to avoid -Wdiscardedqualifier warning at model compilation | 04 August 2023, 13:24:22 UTC |
| 88d645e | Timo Rachel | 01 August 2023, 13:44:19 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 01 August 2023, 13:44:19 UTC |
| 348c3d0 | nneubr | 01 August 2023, 13:20:20 UTC | removed L1 trdog | 01 August 2023, 13:20:20 UTC |
| 6ae70f4 | Timo Rachel | 31 July 2023, 14:17:07 UTC | Merge branch 'master' of https://github.com/Data2Dynamics/d2d | 31 July 2023, 14:17:07 UTC |
| b1600f0 | Timo Rachel | 31 July 2023, 13:58:28 UTC | add example to pleSelectOptimum and redo ple for ple.allowbetteroptimum==2 in ple.m if better optimum found | 31 July 2023, 13:58:28 UTC |
| 9a7f501 | ckreutz | 12 June 2023, 11:38:06 UTC | Merge branch 'master' of https://github.com/Data2Dynamics/d2d | 12 June 2023, 11:38:06 UTC |
| e285fe9 | ckreutz | 12 June 2023, 11:37:59 UTC | Trying to get a message, if y is NaN in C code. However, did not work, see comment in code | 12 June 2023, 11:37:59 UTC |
| ffd54c1 | simonbeyer1 | 02 June 2023, 17:28:44 UTC | Update arHelpInputs | 02 June 2023, 17:28:44 UTC |
| 4f25808 | simonbeyer1 | 02 June 2023, 17:26:16 UTC | Periodic stepfunction added | 02 June 2023, 17:26:16 UTC |
| 6d225da | ckreutz | 02 June 2023, 09:01:26 UTC | A new/second function for waterfall plots, i.e. for plotting the result of multistart optimization | 02 June 2023, 09:01:26 UTC |
| 7e5d47a | srv-kreutz | 26 May 2023, 08:31:57 UTC | exp added as keyword | 26 May 2023, 08:31:57 UTC |
| 2869927 | ckreutz | 11 May 2023, 09:40:13 UTC | ODE model template now has Input symtax as comment | 11 May 2023, 09:40:13 UTC |
| ea9dcf2 | ckreutz | 02 May 2023, 11:50:52 UTC | Try to solve the Potential XSS vulnerability in jQuery issue | 02 May 2023, 11:50:52 UTC |
| ef60aa5 | ckreutz | 11 April 2023, 07:15:52 UTC | Path to ProjectTemplate added (for arCreateProject.m) | 11 April 2023, 07:15:52 UTC |
| 53050db | ckreutz | 06 April 2023, 16:10:50 UTC | Bugs and improvement occured during 2nd MSB modelling workshop | 06 April 2023, 16:10:50 UTC |
| 10a50ef | fgwieland | 28 March 2023, 13:15:30 UTC | arLoadData: Optional specification of delimiter for csv observable files | 28 March 2023, 13:15:30 UTC |
| f299621 | fgwieland | 28 March 2023, 13:14:57 UTC | Fix: Bugfixes in arDebugResidual and arGetMerit arGetMerit: Corrected string printing for merit Subfunctions/arDebugResidual: Corrected loop range for NaN sensitivities | 28 March 2023, 13:14:57 UTC |
| 8a5c5b0 | ckreutz | 27 March 2023, 12:01:37 UTC | arLoad now supports sorting according to chi2 and according to checkstr (for finding duplicates) | 27 March 2023, 12:01:37 UTC |
| 0998855 | ckreutz | 13 March 2023, 14:08:59 UTC | Allow unlog, printing [ ... ] around CI | 13 March 2023, 14:08:59 UTC |
| 62eff19 | ckreutz | 13 March 2023, 13:44:08 UTC | Printing a subset of parameters, LB and UB directly after MLE | 13 March 2023, 13:44:08 UTC |
| b3fbbf9 | ckreutz | 24 February 2023, 09:29:20 UTC | arCreateProjekt with templates e.g. for TransientFunction | 24 February 2023, 09:29:20 UTC |
| 28a28b1 | ckreutz | 21 February 2023, 19:29:36 UTC | arCreateProject is now feasible with different model templates | 21 February 2023, 19:29:36 UTC |
| 86436b4 | M. Heinrich | 20 February 2023, 11:25:27 UTC | Changes in StrucID, implementation of parameter scatter, bug fix with example | 20 February 2023, 11:25:27 UTC |
| b68041d | srv-kreutz | 31 January 2023, 15:22:38 UTC | Renaming after resolving bad merge | 31 January 2023, 15:22:38 UTC |
| b7f3706 | srv-kreutz | 31 January 2023, 15:21:51 UTC | Resolve bad merge | 31 January 2023, 15:21:51 UTC |
| 80e95da | fgwieland | 31 January 2023, 09:39:54 UTC | Bugfix in arCompile for large sets of compilation files (Windows) | 31 January 2023, 09:39:54 UTC |
| b9c8673 | srv-kreutz | 24 January 2023, 21:31:36 UTC | Confidence levels now in the title | 24 January 2023, 21:31:36 UTC |
| 2b9b2d3 | srv-kreutz | 17 January 2023, 08:54:17 UTC | Nicer VPL output, profile2CI added | 17 January 2023, 08:54:17 UTC |
| 523b08f | Adrian Hauber | 10 January 2023, 15:41:30 UTC | Regularization with penalization of fold-change differences | 10 January 2023, 15:41:30 UTC |
| b743fdc | JanineEgert | 03 January 2023, 10:38:45 UTC | update transient and realistic functions | 03 January 2023, 10:38:45 UTC |
| fcfff95 | JanineEgert | 03 January 2023, 10:18:00 UTC | PEtab export, add greater equal as spline input | 03 January 2023, 10:18:00 UTC |
| 9b2a64c | JanineEgert | 03 January 2023, 10:14:57 UTC | remove old version of realistic simulation | 03 January 2023, 10:14:57 UTC |
| ee3236d | JanineEgert | 03 January 2023, 10:12:43 UTC | Realistic simulation of measurements | 03 January 2023, 10:12:43 UTC |
| 0a81b2c | JanineEgert | 03 January 2023, 10:08:54 UTC | Transient function template | 03 January 2023, 10:08:54 UTC |
| e89fc74 | JanineEgert | 03 January 2023, 10:08:05 UTC | Update transient functions | 03 January 2023, 10:08:05 UTC |
| f29c56a | clemenskreutz | 12 December 2022, 10:35:20 UTC | Handling different order in ar.fittransient and ar.p | 12 December 2022, 10:35:20 UTC |
| f2e5a2a | clemenskreutz | 12 December 2022, 10:30:53 UTC | Comments in the code and a new color | 12 December 2022, 10:30:53 UTC |
| ba88af5 | clemenskreutz | 12 December 2022, 10:29:02 UTC | Other tex filenames to not overwrite the output of arReport.m | 12 December 2022, 10:29:02 UTC |
| e3c956f | clemenskreutz | 06 December 2022, 13:46:33 UTC | Nicer profile likelihood plots | 06 December 2022, 13:46:33 UTC |
| 3e442b3 | clemenskreutz | 06 December 2022, 13:44:30 UTC | Automatic recompilation | 06 December 2022, 13:44:30 UTC |
| 20557be | clemenskreutz | 11 November 2022, 12:32:27 UTC | Function should work without ar struct | 11 November 2022, 12:32:27 UTC |
| 032adf5 | clemenskreutz | 11 November 2022, 12:27:33 UTC | Merge branch 'master' of https://github.com/Data2Dynamics/d2d | 11 November 2022, 12:27:33 UTC |
| 657d782 | clemenskreutz | 11 November 2022, 12:27:19 UTC | handle missing field ar.setup | 11 November 2022, 12:27:19 UTC |
| a5431c9 | srv-kreutz | 11 November 2022, 12:19:18 UTC | Wrong model and data filenames corrected | 11 November 2022, 12:19:18 UTC |
| 275e7ce | srv-kreutz | 11 November 2022, 12:05:13 UTC | R2021b included in version dependency | 11 November 2022, 12:05:13 UTC |
| 532b3c7 | Lukas Refisch | 16 September 2022, 15:11:43 UTC | some tweaks for logarithm of states | 16 September 2022, 15:11:43 UTC |
| 0b434e5 | Marlene Heinrich | 09 September 2022, 14:45:24 UTC | changes in Strike Goldd and StrucID -- work in Progress | 09 September 2022, 14:45:24 UTC |
| 3e3d4fc | Marlene Heinrich | 02 September 2022, 12:46:40 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 02 September 2022, 12:46:40 UTC |
| 85efb77 | Marlene Heinrich | 02 September 2022, 12:45:34 UTC | changes in Strike Goldd and StrucID -- Work in Progress | 02 September 2022, 12:45:34 UTC |
| c30fdb5 | Adrian Hauber | 23 August 2022, 12:07:40 UTC | PEtab updates | 23 August 2022, 12:07:40 UTC |
| a7771a6 | Marlene Heinrich | 15 August 2022, 13:59:10 UTC | work in progress -- new strike goldd model | 15 August 2022, 13:59:10 UTC |
| 808fd57 | Marlene Heinrich | 15 August 2022, 13:36:39 UTC | work in progress -- struc id adimat stuff | 15 August 2022, 13:36:39 UTC |
| 46c67ef | Marlene Heinrich | 15 August 2022, 13:35:32 UTC | work in progress -- strucid | 15 August 2022, 13:35:32 UTC |
| bdf6d06 | Marlene Heinrich | 15 August 2022, 13:30:27 UTC | work in progress -- added stuf in strucid | 15 August 2022, 13:30:27 UTC |
| eac9593 | mh816 | 15 August 2022, 13:28:26 UTC | work in progress -- added stuff for strike goldd and strucid | 15 August 2022, 13:28:26 UTC |
| 2d81ab8 | Marlene Heinrich | 11 August 2022, 10:44:45 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 11 August 2022, 10:44:45 UTC |
| 715fa6a | Marlene Heinrich | 11 August 2022, 10:44:37 UTC | changes in StrikeGoldd and initial StrucID | 11 August 2022, 10:44:37 UTC |
| 5fc6111 | Adrian Hauber | 08 August 2022, 09:23:06 UTC | check toolbox requirements | 08 August 2022, 09:23:06 UTC |
| eb57b72 | Adrian Hauber | 08 August 2022, 08:58:54 UTC | bugfix for R2022a version checking with >= does not work with newer matlab versions | 08 August 2022, 08:58:54 UTC |
| e236e33 | Adrian Hauber | 08 August 2022, 08:41:26 UTC | bugfix for R2022a symbolic variables cannot include brackets or parantheses | 08 August 2022, 08:41:26 UTC |
| 2beab23 | Adrian Hauber | 11 July 2022, 08:44:59 UTC | bugfix steady state | 11 July 2022, 08:44:59 UTC |
| b98dff6 | Adrian Hauber | 11 July 2022, 07:37:53 UTC | also replace SBML's power function in conditions | 11 July 2022, 07:37:53 UTC |
| f61822b | Fabian Lorenz | 30 June 2022, 09:46:01 UTC | fix bug in 78d3727c4d36220071dde6e03c301d5f3dc42777 | 30 June 2022, 09:46:01 UTC |
| 78d3727 | Fabian Lorenz | 29 June 2022, 13:58:39 UTC | add spline30 input function | 29 June 2022, 13:58:39 UTC |
| 1463ceb | JanineEgert | 29 June 2022, 11:04:49 UTC | allow model name with .def in arLoadModel | 29 June 2022, 11:04:49 UTC |
| 692ca62 | JanineEgert | 29 June 2022, 11:03:29 UTC | add logscale output to exporttoblotit | 29 June 2022, 11:03:29 UTC |
| 9a93888 | JanineEgert | 21 June 2022, 10:58:37 UTC | bugfix if reaction label empty char | 21 June 2022, 10:58:37 UTC |
| ee2c5f1 | Lukas Refisch | 02 June 2022, 15:37:33 UTC | bugfix of previous commit from ck | 02 June 2022, 15:37:33 UTC |
| e377351 | clemenskreutz | 02 June 2022, 15:04:07 UTC | log-transformation of the states, Caution: dynamics does not yet coincide perfectly | 02 June 2022, 15:04:07 UTC |
| 495ff5d | Adrian Hauber | 24 May 2022, 13:07:56 UTC | Merge branch 'master' of https://github.com/Data2Dynamics/d2d | 24 May 2022, 13:07:56 UTC |
| fc3455f | Adrian Hauber | 24 May 2022, 13:07:54 UTC | allow using error model for simulating data use exp errors only if error model is not forced | 24 May 2022, 13:07:54 UTC |
| 4353891 | Marlene Heinrich | 18 May 2022, 18:49:51 UTC | Merge branch 'master' of github.com:Data2Dynamics/d2d | 18 May 2022, 18:49:51 UTC |
| 349ca6d | Marlene Heinrich | 18 May 2022, 18:48:33 UTC | add missing files for StrikeGoldd | 18 May 2022, 18:48:33 UTC |
| c0bc953 | clemenskreutz | 12 May 2022, 14:17:14 UTC | Template code for converting model defs | 12 May 2022, 14:17:14 UTC |
| 9f83890 | Adrian Hauber | 10 May 2022, 14:12:16 UTC | Merge branch 'master' of https://github.com/Data2Dynamics/d2d | 10 May 2022, 14:12:16 UTC |
| aa984c6 | Adrian Hauber | 10 May 2022, 14:12:15 UTC | mention arFindInputs in arHelpInputs | 10 May 2022, 14:12:15 UTC |
| d919335 | clemenskreutz | 28 April 2022, 13:09:19 UTC | Size of data yExp is proven seperately | 28 April 2022, 13:09:19 UTC |
| 8fab992 | Adrian Hauber | 29 March 2022, 09:37:42 UTC | Merge branch 'master' of https://github.com/Data2Dynamics/d2d | 29 March 2022, 09:37:42 UTC |
| d7e5c61 | Adrian Hauber | 29 March 2022, 09:37:41 UTC | ODESS steady state tool bugfix & upgrade to AlyssaPetit1.0 | 29 March 2022, 09:37:41 UTC |
| 45877ef | clemenskreutz | 07 March 2022, 12:15:23 UTC | Bug occurring for old workspaces | 07 March 2022, 12:15:23 UTC |
| 2c6b5a5 | fgwieland | 02 March 2022, 08:39:14 UTC | Bugfix in arLoadData for random effects loading and plotting | 02 March 2022, 08:39:14 UTC |
| 2b055f2 | Adrian Hauber | 18 February 2022, 09:44:45 UTC | bugfix for invalid filenames | 18 February 2022, 09:44:45 UTC |
| e4b820b | Adrian Hauber | 17 February 2022, 08:46:59 UTC | support for events when importing PEtab problems | 17 February 2022, 08:46:59 UTC |
| 3d77f9d | Adrian Hauber | 17 February 2022, 08:46:25 UTC | bugfix for compilation error when filenames include semicolon | 17 February 2022, 08:46:25 UTC |
| 906f88e | Adrian Hauber | 03 February 2022, 13:33:08 UTC | include check for number of files in yaml | 03 February 2022, 13:33:08 UTC |
| 879fb57 | Adrian Hauber | 27 January 2022, 14:36:19 UTC | bugfix | 27 January 2022, 14:36:19 UTC |
| 0f6ad9d | Adrian Hauber | 27 January 2022, 14:18:26 UTC | Delete arFramework3/Examples/ToyModels/PEtab-select_Tests directory | 27 January 2022, 14:18:26 UTC |
| d81cffc | Adrian Hauber | 26 January 2022, 14:50:52 UTC | add dependencies of petab select tests | 26 January 2022, 14:50:52 UTC |
| 4d9897a | Adrian Hauber | 26 January 2022, 14:36:14 UTC | rename petab select dir | 26 January 2022, 14:36:14 UTC |
| 9409dba | Adrian Hauber | 26 January 2022, 14:33:59 UTC | typo | 26 January 2022, 14:33:59 UTC |
| cb2a2e2 | Adrian Hauber | 26 January 2022, 14:32:27 UTC | typo | 26 January 2022, 14:32:27 UTC |
