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19e6197 Daniel Karrasch 10 January 2024, 13:01:07 UTC Update stdlib/LinearAlgebra/test/diagonal.jl 10 January 2024, 13:01:07 UTC
6ea28c8 Daniel Karrasch 10 January 2024, 13:00:00 UTC Update stdlib/LinearAlgebra/test/diagonal.jl 10 January 2024, 13:00:00 UTC
8d312e9 Daniel Karrasch 08 January 2024, 20:13:55 UTC rearrange 08 January 2024, 20:13:55 UTC
465cf4e Daniel Karrasch 08 January 2024, 10:07:05 UTC fix whitespace 08 January 2024, 10:07:05 UTC
795fb4a Daniel Karrasch 08 January 2024, 10:01:09 UTC Type-stabilize generic matrix solves 08 January 2024, 10:01:09 UTC
0afa354 DilumAluthgeBot 08 January 2024, 08:39:52 UTC 🤖 [master] Bump the SparseArrays stdlib from f890a1e to 63459e5 (#52792) Stdlib: SparseArrays URL: https://github.com/JuliaSparse/SparseArrays.jl.git Stdlib branch: main Julia branch: master Old commit: f890a1e New commit: 63459e5 Julia version: 1.11.0-DEV SparseArrays version: 1.11.0 Bump invoked by: @dkarrasch Powered by: [BumpStdlibs.jl](https://github.com/JuliaLang/BumpStdlibs.jl) Diff: https://github.com/JuliaSparse/SparseArrays.jl/compare/f890a1e13fc04c295cec48a9b08b76c6e1a7039a...63459e5ee9e361dbe7cf260030a7407a1f241430 ``` $ git log --oneline f890a1e..63459e5 63459e5 Reduce allocation of dense arrays on-the-fly in linalg tests (#485) c73d6e3 Reduce number of `*` methods by adopting `matprod_dest` (#484) ``` Co-authored-by: Dilum Aluthge <dilum@aluthge.com> 08 January 2024, 08:39:52 UTC
55113b5 Florian 08 January 2024, 06:59:46 UTC Allow `include()` and `include_dependency()` files to resolve to different depots (#52750) Fixes #52161 #52161 is an awkward use of the relocation feature in the sense that it attempts to load the `include()` and `include_dependency` files of a pkg from two separate depots. The problem there is that the value with which we replace the `@depot` tag for both `include()` and `include_dependency()` files is determined by trying to relocate only the `include()` files. We then end up not finding the `include_dependency()` files. Solution: @staticfloat noted that the pkg slugs in depot paths like `@depot/packages/Foo/1a2b3c/src/Foo.jl` are already enough to (weakly) content-address a depot. This means that we should be able to load any `include()` file of a pkg from any `depot` that contains a precompile cache, provided the hashes match. The same logic can be extended to `include_dependency()` files, which this PR does. Note that we continue to use only one file from the `include()` files to determine the depot which we use to relocate all `include()` files. [this behavior is kept from master] But for `include_dependency()` files we allow each file to resolve to a different depot. This way the MWE given in #52161 should be extendable to two README files being located in two different pkgs that lie in two different depots. --- Side note: #49866 started with explicitly verifying that all `include()` files come from the same depot. In #52346 this was already relaxed to pick the first depot for which any `include()` file can be resolved to. This works, because if any other file might be missing from that depot then this is caught in `stalecache()`. 08 January 2024, 06:59:46 UTC
8dc2c30 Jishnu Bhattacharya 08 January 2024, 03:01:08 UTC Preserve eltype in converting `Symmetric` to `Matrix` (#52738) This allows cases where the `eltype` differs from that of the parent: ```julia julia> M = [UpperTriangular([1 2; 3 4]) for i in 1:2, j in 1:2] 2×2 Matrix{UpperTriangular{Int64, Matrix{Int64}}}: [1 2; 0 4] [1 2; 0 4] [1 2; 0 4] [1 2; 0 4] julia> H = Hermitian(M) 2×2 Hermitian{AbstractMatrix, Matrix{UpperTriangular{Int64, Matrix{Int64}}}}: [1 2; 2 4] [1 2; 0 4] [1 0; 2 4] [1 2; 2 4] julia> Array(H) 2×2 Matrix{AbstractMatrix}: [1 2; 2 4] [1 2; 0 4] [1 0; 2 4] [1 2; 2 4] ``` This conversion throws an error at present on master. 08 January 2024, 03:01:08 UTC
d07de16 Jameson Nash 08 January 2024, 01:18:55 UTC improve AbstractPipe docs and IOContext handling as an AbstractPipe (#52768) Following some complains that `AbstractPipe` did not mention the functions that comprise its API, I have updated that and some other related details of its subtypes. 1. Mention the expected API surface for AbstractPipe 2. Expand the docs for Pipe as well 3. And add better support for explicit type parameters to IOContext. This gives more options to users, such as creating an explicitly dynamic `IOContext{IO}(io)` to avoid excess specialization. Any explicitly set parameter should now be inherited by future `IOContext` constructions around it, rather than always directly adopting the `typeof(io.io)` type instead as the new parameter. 08 January 2024, 01:18:55 UTC
edd2223 Ian Butterworth 08 January 2024, 00:32:07 UTC Revert "Warn if an already loaded package is attempted to be loaded from a different path" (#52794) 08 January 2024, 00:32:07 UTC
1d3dd85 Milan Bouchet-Valat 07 January 2024, 22:06:46 UTC Use `ismissing(x)` instead of `x === missing` (#44407) This is more generic and will allow packages to define custom `missing`-like types allowing to distinguish several kinds of missing values like in e.g. Stata and SAS (see https://github.com/nalimilan/TypedMissings.jl). This should have no performance impact now thanks to #38905. 07 January 2024, 22:06:46 UTC
05992e7 Daniel Karrasch 07 January 2024, 18:33:27 UTC Enable rational division with uniform scaling (#52785) 07 January 2024, 18:33:27 UTC
9bf84d4 Ian Butterworth 07 January 2024, 15:22:16 UTC REPL: make alt-m on an empty prompt go to previous module (#52670) 07 January 2024, 15:22:16 UTC
5cd61ec Elliot Saba 07 January 2024, 12:39:21 UTC Switch `already_warned_path_change_pkgs` to `Set{PkgId}()` (#52789) 07 January 2024, 12:39:21 UTC
e2b31cd Elliot Saba 07 January 2024, 04:20:50 UTC Guard against `nothing` appearing from `load_package()` (#52788) 07 January 2024, 04:20:50 UTC
c63c3b0 Matt Stinson 07 January 2024, 01:36:37 UTC Update performance-tips.md with JET.jl instead of Traceur.jl (#52786) Switch this tip from Traceur to JET as Traceur is no longer maintained. 07 January 2024, 01:36:37 UTC
bac95cc Shuhei Kadowaki 07 January 2024, 01:36:15 UTC inference: thread lattice through memoryop type check (#52773) We would probably need to backport similar changes to 1.10 too. xref: aviatesk/JET.jl#589 07 January 2024, 01:36:15 UTC
8fe383f N5N3 07 January 2024, 01:28:52 UTC Reland "Generalize broadcast!(f, ::BitVector) optimization to `BitArray`." (#52736) (#52776) Reland "Generalize broadcast!(f, ::BitVector) optimization to `BitArray`." (#52736) 07 January 2024, 01:28:52 UTC
ea085ea Jishnu Bhattacharya 06 January 2024, 21:13:22 UTC Disambiguate structured and abstract matrix multiplication (#52464) Co-authored-by: Daniel Karrasch <Daniel.Karrasch@posteo.de> 06 January 2024, 21:13:22 UTC
0cb5a0e Elliot Saba 06 January 2024, 19:11:28 UTC Fix `MethodError` when warning about a toplevel module (#52782) 06 January 2024, 19:11:28 UTC
c827094 Elliot Saba 06 January 2024, 18:07:26 UTC Fix variable naming confusion in `warn_if_already_loaded_different()` (#52778) 06 January 2024, 18:07:26 UTC
ecb668b Mason Protter 06 January 2024, 16:27:19 UTC RFC: Methods for `eigen` on complex hermitian tridiagonal matrices (#49546) Co-authored-by: Daniel Karrasch <daniel.karrasch@posteo.de> Co-authored-by: Steven G. Johnson <stevenj@mit.edu> 06 January 2024, 16:27:19 UTC
dd7f1f8 N5N3 06 January 2024, 12:04:28 UTC use `Integer` during broadcast when possible. 06 January 2024, 16:18:20 UTC
513d013 Michael Tiemann 06 January 2024, 14:53:54 UTC [Markdown] added doc string for @md_str string literal (#52606) This PR addresses #51168 . I guess this PR wants to have the labels doc & markdown . --------- Co-authored-by: Steven G. Johnson <stevenj@mit.edu> Co-authored-by: Jameson Nash <vtjnash@gmail.com> Co-authored-by: Steven G. Johnson <stevenj@alum.mit.edu> 06 January 2024, 14:53:54 UTC
c5dcf4f Mosè Giordano 06 January 2024, 14:12:24 UTC [SuiteSparse_jll] Update to v7.4.0 (#52577) Usual memo to self for the update: * change version number in `stdlib/SuiteSparse_jll/Project.toml` * refresh checksums in `deps/checksums/suitesparse` with `make -f contrib/refresh_checksums.mk -j libsuitesparse`. Note: this will also delete the files `deps/checksums/SuiteSparse-*.tar.gz/*`, but those refer to the stdlib which is the julia wrapper around the binary dependency, those files have to be restored manually, I don't know how to make the makefile behave nicely. You will also have to remove the lines `SuiteSparse-*.tar.gz/md5/*` added to the file `deps/checksums/suitesparse`, they are wrong for the same reason * update version numbers in `deps/libsuitesparse.version`. Judging by the changes in https://github.com/JuliaPackaging/Yggdrasil/pull/7596 we don't need to touch the manual build system. I have no idea whether SuiteSparse retains API/ABI compatibility within the same major version, I surely hope so because I won't have the strength to try and fix large compatibility errors. 06 January 2024, 14:12:24 UTC
ae6af52 N5N3 06 January 2024, 11:49:47 UTC Revert "Revert "Generalize `broadcast!(f, ::BitVector)` optimization to `BitArray`." (#52775)" This reverts commit 11bb62b079aa95eac59deed4184be539563e15df. 06 January 2024, 11:49:47 UTC
11bb62b Tim Besard 06 January 2024, 11:43:09 UTC Revert "Generalize `broadcast!(f, ::BitVector)` optimization to `BitArray`." (#52775) This broke many packages on PkgEval. 06 January 2024, 11:43:09 UTC
f18cc43 Mosè Giordano 06 January 2024, 11:07:40 UTC [doc] Fix format string of `printf` in `@ccall` example (#52770) The format string of the `@ccall` example for `printf` had a `%d` specifier but the argument passed was `"5"::Cstring`, which is also inconsistent with the corresponding `ccall` example. 06 January 2024, 11:07:40 UTC
b682592 Mosè Giordano 06 January 2024, 08:41:27 UTC [OpenBLAS] Ugrade to v0.3.26 (#52762) Memo to self: * update version number in `stdlib/OpenBLAS_jll/Project.toml` * update version number and sha in `deps/openblas.version` * refresh checksums with `make -f contrib/refresh_checksums.mk -j openblas` In the [release notes of v0.3.26](https://github.com/OpenMathLib/OpenBLAS/releases/tag/v0.3.26) one of the more interesting point is perhaps > included support for Apple M1 and newer targets in DYNAMIC_ARCH builds Quoting from https://github.com/JuliaPackaging/Yggdrasil/pull/7911#issuecomment-1878884892 > Some quick benchmarks on M1: with OpenBLAS 0.3.25: > ```julia > julia> using LinearAlgebra, BenchmarkTools > > julia> peakflops() > 1.7049262964078418e11 > > julia> x = randn(1_000); y = randn(size(x)); > > julia> @btime dot($x, $y); > 402.705 ns (0 allocations: 0 bytes) > ``` > with OpenBLAS v0.3.26: > ```julia > julia> using LinearAlgebra, BenchmarkTools > > julia> peakflops() > 1.8042546290642157e11 > > julia> x = randn(1_000); y = randn(size(x)); > > julia> @btime dot($x, $y); > 143.777 ns (0 allocations: 0 bytes) > ``` > Up to OpenBLAS v0.3.25 you can get similar performance on Apple Silicon by exporting the environment variable > ```sh > OPENBLAS_CORETYPE=NEOVERSEN1 > ``` 06 January 2024, 08:41:27 UTC
9aaa8c7 Tim Holy 06 January 2024, 06:09:43 UTC Use `jl_types_egal` in `equiv_field_types` (#52748) Fixes #52686 Fixes https://github.com/timholy/Revise.jl/issues/770 --------- Co-authored-by: Jameson Nash <vtjnash@gmail.com> Co-authored-by: Kristoffer Carlsson <kcarlsson89@gmail.com> Co-authored-by: Shuhei Kadowaki <40514306+aviatesk@users.noreply.github.com> 06 January 2024, 06:09:43 UTC
ae5880a Erik Schnetter 06 January 2024, 03:37:14 UTC EscapeAnalysis.jl: Correct grammar in comment (#52764) 06 January 2024, 03:37:14 UTC
103e50a Diogo Netto 06 January 2024, 01:37:37 UTC also enable gc_assert_parent_validity on GC_VERIFY (#52767) Keeping this functionality untested on CI increases the chance of it rotting. 06 January 2024, 01:37:37 UTC
c94b1a3 Jameson Nash 05 January 2024, 20:42:40 UTC staticdata: handle cycles in datatypes (#52752) Handle any sort of cycle encountered in the datatype super fields by always deferring that field until later and setting a deferred mechanism for updating the field only after the supertype is ready. Fix #52660 05 January 2024, 20:42:40 UTC
c9bc2ff Kristoffer Carlsson 05 January 2024, 15:45:09 UTC loading: fix finding bundled stdlibs even if they are e.g. devved in an environment higher in the load path (#52637) I noticed this when seeing some weird precompile issues when I had SparseArrays devved in my main environment but it was with the standard stdlib format in the current environment: ``` (NearestNeighbors) pkg> st -m Project NearestNeighbors v0.4.15 Status `~/JuliaPkgs/NearestNeighbors.jl/Manifest.toml` ... [2f01184e] SparseArrays v1.10.0 ... ``` But even so, `locate_package` claims that the path to SparseArrays is the one in the main environment: ``` julia> pkg = Base.PkgId(Base.UUID("2f01184e-e22b-5df5-ae63-d93ebab69eaf"), "SparseArrays") SparseArrays [2f01184e-e22b-5df5-ae63-d93ebab69eaf] julia> Base.locate_package(pkg) "/home/kc/JuliaPkgs/SparseArrays.jl/src/SparseArrays.jl" ``` This correctly fixes it so that packages without a `git-tree-sha1` (and without a `path`) are resolved to the stdlib path. 05 January 2024, 15:45:09 UTC
f01898c Lars Göttgens 05 January 2024, 13:02:33 UTC Fix printing of `InexactError` for `Inf16` arg and similar (#52491) Resolves https://github.com/JuliaLang/julia/issues/51087 Closes https://github.com/JuliaLang/julia/pull/51163 Use `show` as pointed out in https://github.com/JuliaLang/julia/pull/51163#discussion_r1328682832. 05 January 2024, 13:02:33 UTC
f68d7f8 Fons van der Plas 05 January 2024, 12:58:06 UTC [Markdown] Docstring for html and latex functions (#52733) Part of #52725 05 January 2024, 12:58:06 UTC
67e6127 Kristoffer Carlsson 05 January 2024, 10:38:31 UTC remove very old error hint from using `.data` field on a String (#52737) This field was removed 7 years ago. I think it is fine to not special case it any longer. 05 January 2024, 10:38:31 UTC
3a02053 Jishnu Bhattacharya 05 January 2024, 08:27:55 UTC Fix quotes in the docstring of `copytrito!` (#52718) 05 January 2024, 08:27:55 UTC
50788cd N5N3 05 January 2024, 08:11:45 UTC Generalize `broadcast!(f, ::BitVector)` optimization to `BitArray`. (#52736) Follows #32048. This PR fully avoids the allocation thus make nd logical broadcast better scaled for small inputs. --------- Co-authored-by: Matt Bauman <mbauman@gmail.com> 05 January 2024, 08:11:45 UTC
316cc4a Shuhei Kadowaki 05 January 2024, 01:59:58 UTC remove outdated handling of `:static_parameter` (#52732) After #51970, `Expr(:static_parameter, i::Int)` is now consistently outlined during the lowering, so there's no longer a need for `abstract_eval_value_expr` to handle this expression. This update removes the outdated handling, clarifying where we need to handle the expression. 05 January 2024, 01:59:58 UTC
31a9f13 Keno Fischer 05 January 2024, 01:59:49 UTC Properly rename EnterNode scope after code coverage insertion (#52720) Fixes #52672 and changes the emission path to move the error to the point of corruption instead of the point of first use. 05 January 2024, 01:59:49 UTC
38b8156 Steven G. Johnson 04 January 2024, 21:44:38 UTC expand Docs.undocumented_names to include all public symbols (#52743) Expands the semantics of `Docs.undocumented_names` to include all public symbols, as described in https://github.com/JuliaLang/julia/pull/52413#issuecomment-1876266678 cc @jariji, @LilithHafner --------- Co-authored-by: Lilith Orion Hafner <lilithhafner@gmail.com> 04 January 2024, 21:44:38 UTC
6934379 Jeff Bezanson 04 January 2024, 21:03:29 UTC remove method file names with `--strip-metadata` (#52722) These should not appear in binaries when this option is specified. 04 January 2024, 21:03:29 UTC
5a28cf5 Steve Kelly 04 January 2024, 17:35:27 UTC add doxygen for exported functions in jlapi.c (#52324) This adds some brief doxygen-formatted docstrings to jlapi.c. The objective of this PR is to set doxygen docstrings as the documentation method for Julia's C code, and allow for further development of reference material for the use of Julia through the C API. These docstrings are immediately useful for consumption by C/C++ development extensions such as tooltips. In the future these can be useful to generate a cohesive API reference, though this is a separate concern involving the build system. 04 January 2024, 17:35:27 UTC
ec686c3 Keno Fischer 04 January 2024, 15:51:49 UTC inference: Guard TypeVar special case against vararg (#52721) Fix #52613 by making the TypeVar special case in inference check for vararg first. There's nothing the special case can really do with vararg anyway, so fall back to the ordinary abstract call handling. 04 January 2024, 15:51:49 UTC
f9b27b3 Frames White 04 January 2024, 11:14:51 UTC Print type signature for what was inferring whenever an internal error is thrown (#52695) 04 January 2024, 11:14:51 UTC
0f6c72c Lilith Orion Hafner 03 January 2024, 21:48:50 UTC Replace most occurances of http with https when the https url is valid (#52566) This should be minor and mostly NFC. 03 January 2024, 21:48:50 UTC
d97ab8a Keno Fischer 03 January 2024, 21:17:26 UTC sroa: Fix small logic bug (#52717) This fixes #52703, which happened when a function had a foldable, try-catch-with-scope inside an ordinary try/catch. The fix is to simply ignore the ordinary try/catch and treat it as a regular fallthrough terminator. 03 January 2024, 21:17:26 UTC
3a3af82 Lilith Orion Hafner 03 January 2024, 15:29:42 UTC Fix whitespace in README.md (#52714) Fixup for #52691, fixes the whitespace CI check. cc @inkydragon, @ViralBShah 03 January 2024, 15:29:42 UTC
ca0a266 Lilith Orion Hafner 03 January 2024, 13:34:38 UTC Test BracketedSort on fully pathological inputs (#52653) 03 January 2024, 13:34:38 UTC
792a35b Lilith Orion Hafner 03 January 2024, 13:23:38 UTC Show Numbers compactly when typeinfo is a Union with Nothing or Missing (#48822) 03 January 2024, 13:23:38 UTC
fb8d7f1 inky 03 January 2024, 07:21:39 UTC README: minor polish (#52691) changes - move `write_base_cache.jl` to `contrib/` `generate_precompile.jl` is also placed there - In section "Source Code Organization", add `etc/`, remove `usr/` `usr/` appears only at build time. - Some minor polish --------- Co-authored-by: Viral B. Shah <ViralBShah@users.noreply.github.com> 03 January 2024, 07:21:39 UTC
0ea2b56 DilumAluthgeBot 03 January 2024, 07:09:38 UTC 🤖 [master] Bump the SparseArrays stdlib from f154de2 to feb54ee (#52706) Stdlib: SparseArrays URL: https://github.com/JuliaSparse/SparseArrays.jl.git Stdlib branch: main Julia branch: master Old commit: f154de2 New commit: feb54ee Julia version: 1.11.0-DEV SparseArrays version: 1.11.0 Bump invoked by: @giordano Powered by: [BumpStdlibs.jl](https://github.com/JuliaLang/BumpStdlibs.jl) Diff: https://github.com/JuliaSparse/SparseArrays.jl/compare/f154de2b6801ec8d5afaf58b73b830c8e71013c3...feb54ee5e49008bd157227099cafe604a67c36fb ``` $ git log --oneline f154de2..feb54ee feb54ee fix typo ("ArguementError") (#479) 8308232 Extend sparse kron to adjortrans of dense matrices (#474) 951837f Simplify calling Aqua (#473) ``` Co-authored-by: Dilum Aluthge <dilum@aluthge.com> Co-authored-by: Viral B. Shah <ViralBShah@users.noreply.github.com> 03 January 2024, 07:09:38 UTC
3279a1f inky 03 January 2024, 05:08:48 UTC THIRDPARTY: Consider `base/` and `stdlib/` as standard libraries (#52692) Changes: - Consider `base/` and `stdlib/` as standard libraries - Add optional dep: `LibTracyClient` - Add license for tools, and update link - Update spdx.json 03 January 2024, 05:08:48 UTC
2d0aeca Ian Butterworth 02 January 2024, 23:00:26 UTC Fix precompile reason print when nothing (#52701) 02 January 2024, 23:00:26 UTC
972f55f Curtis Vogt 02 January 2024, 19:04:46 UTC Mention `@lock` in `lock(f, l)` docstring (#52357) Follow up to: https://github.com/JuliaLang/julia/issues/36441. Makes this macro much easier to learn about if you're just viewing the docstrings. 02 January 2024, 19:04:46 UTC
1dfd2a6 Jameson Nash 02 January 2024, 19:04:17 UTC syntax: properly linearize type-for-closure code (#52497) The (core svec) calls are not supposed to be nested like this now. We would rarely attempt to infer this, which makes it hard to notice, but we should try to be correct. 02 January 2024, 19:04:17 UTC
567754c Tortar 02 January 2024, 14:32:56 UTC update latest stable version in README (#52699) 02 January 2024, 14:32:56 UTC
acddc62 James Wrigley 02 January 2024, 12:04:53 UTC Fix docs for Sockets.getaddrinfo() (#52538) Previously only the two-argument method was documented, which stated that the default type to be returned was IPv4. But that hasn't been true since 2ab654ce5b (#36029), so now both methods are documented and corrected. I believe this fixes #40306. 02 January 2024, 12:04:53 UTC
0d9c0d9 Aniket 02 January 2024, 12:00:53 UTC Add 3-argument div and rem in doc (#52662) Resolves #52624 02 January 2024, 12:00:53 UTC
0f62824 Ian Butterworth 02 January 2024, 01:58:53 UTC Profile: Improve module docstring (#52678) ![Screenshot 2023-12-30 at 7 24 10 PM](https://github.com/JuliaLang/julia/assets/1694067/a7c78943-5e4a-475c-864c-3b0005305471) 02 January 2024, 01:58:53 UTC
7baa577 Ian Butterworth 02 January 2024, 01:57:03 UTC Add `@create_log_macro` for making custom styled logging macros (#52196) 02 January 2024, 01:57:03 UTC
1b183b9 jariji 31 December 2023, 01:32:59 UTC Add Docs.undocumented_names (#52413) Fixes #51174 --------- Co-authored-by: Steven G. Johnson <stevenj@alum.mit.edu> Co-authored-by: Steven G. Johnson <stevenj@mit.edu> 31 December 2023, 01:32:59 UTC
89cae45 Jishnu Bhattacharya 30 December 2023, 17:08:45 UTC Optimized arithmetic methods for strided triangular matrices (#52571) This uses broadcasting for operations like `A::UpperTriangular + B::UpperTriangular` in case the parents are `StridedMatrix`es. Looping only over the triangular part is usually faster for large matrices, where presumably memory is the bottleneck. Some performance comparisons, using ```julia julia> U = UpperTriangular(rand(1000,1000)); julia> U1 = UnitUpperTriangular(rand(size(U)...)); ``` | Operation | master | PR | | --------------- | ---------- | ----- | |`-U` |`1.011 ms (3 allocations: 7.63 MiB)` |`559.680 μs (3 allocations: 7.63 MiB)` | |`U + U`/`U - U` |`971.740 μs (3 allocations: 7.63 MiB)` | `560.063 μs (3 allocations: 7.63 MiB)` | |`U + U1`/`U - U1` |`3.014 ms (9 allocations: 22.89 MiB)` | `944.772 μs (3 allocations: 7.63 MiB)` | |`U1 + U1` |`4.509 ms (12 allocations: 30.52 MiB)` | `1.687 ms (3 allocations: 7.63 MiB)` | |`U1 - U1` |`3.357 ms (9 allocations: 22.89 MiB)` | `1.763 ms (3 allocations: 7.63 MiB)` | I've retained the existing methods as fallback, in case there's current code that works without broadcasting. 30 December 2023, 17:08:45 UTC
fe0db7d Jian Fang 30 December 2023, 14:46:53 UTC heap snapshot: add gc roots and gc finalist roots to fix unrooted nodes (#52618) 30 December 2023, 14:46:53 UTC
2091058 tecosaur 30 December 2023, 12:20:28 UTC Fix :noshift construction of an empty SubString (#51923) 30 December 2023, 12:20:28 UTC
9deee46 djturizo 30 December 2023, 10:58:31 UTC Bunch-Kaufman factorization support for generic number types and inertia computations (#51487) ### Introduction This PR adds a generic implementation of the Bunch-Kaufman factorization in native Julia code, and a generic implementation of a inertia calculation function. Right now Julia only support the Bunch-Kaufman factorization for `Float32`, `Float64` and their complex variants. This is because the factorization is handled by LAPACK, which only supports these types. To extend support to generic number types, I translated the LAPACK implementation to native Julia code, and the code performs the factorization in-place. I also included the function `inertia` that computes the number of positive, negative, and zero eigenvalues of an $n \times n$ Bunch-Kaufman factorized matrix in $\mathcal{O}(n)$ time. ### Changes - `bunchkaufman` and `bunchkaufman!` now work for any `AbstractFloat`, `Rational` and their complex variants. Behavior for previously supported types is not changed (LAPACK is used when possible). `bunchakaufman!` does not support `Integer` types, as in general the factorization lies in the arithmetic closure of the number type (the rationals for the integers). On the other hand, `bunchakaufman` supports `Integer` types, by making an internal conversion to `Rational{BigInt}`. - `ldiv!` for a `BunchKaufman` factorization has extended support for generic number types with type stability. - Previously, Julia extracted the diagonal factor of an $n \times n$ `BunchKaufman` object by making a copy of the matrix and then calling a LAPACK function (`dsyconvf`, `csyconvf`, etc., depending on the number type). This function also computes the triangular factor, so it runs in $\mathcal{O}(n^2)$ time. Now Julia uses a native implementation of the LAPACK function with small modifications, so it computes the diagonal factor in $\mathcal{O}(n)$ time, without making a new copy of the matrix. - Added the function `inertia` that computes the number of positive, negative and zero eigenvalues of the diagonal factor of an $n \times n$ `BunchKaufman` object, in case that the matrix is real symmetric or Hermitian. For complex symmetric matrices, `inertia` only computes the number of zero eigenvalues of the diagonal factor. `inertia` runs in $\mathcal{O}(n)$ time and only uses arithmetic and real absolute value operations. Therefore, `inertia` can be used for matrices of any generic number type, including `Rational`. In particular, for rational matrices the output of `inertia` is exact (unless a positive tolerance is specified). - Unit tests of the `BunchKaufman` library has been adapted to handle low precision number types (approximate comparisons with tolerance `sqrt(eps(Float64))` do not make sense when the floating point type is `Float16`, for example). The test-set now also runs on the following types: `Float16, Complex{Float16}, BigFloat, Complex{BigFloat}, Complex{Int}, BigInt, Complex{BigInt}, Rational{BigInt}, Complex{Rational{BigInt}}`. Unit tests for the `inertia` function have been added too. 30 December 2023, 10:58:31 UTC
3f4cfc6 Mosè Giordano 30 December 2023, 09:04:07 UTC [dSFMT_jll] Upgrade to v2.2.5 (#52667) Usual memo to self: * update version number in `stdlib/dSFMT_jll/Project.toml` * refresh checksums with `make -f contrib/refresh_checksums.mk -j dsfmt` * update version number in `deps/checksums/dsfmt` 30 December 2023, 09:04:07 UTC
2b2f534 Diogo Netto 29 December 2023, 23:37:46 UTC minor fix in malloc terminology used in docs (#52665) 29 December 2023, 23:37:46 UTC
e8f8968 Bhuminjay Soni 29 December 2023, 05:33:19 UTC Added Tests for Permute function in combinatorics.jl (#52648) Signed-off-by: happy <happy@Ubunutt.myguest.virtualbox.org> Co-authored-by: happy <happy@Ubunutt.myguest.virtualbox.org> 29 December 2023, 05:33:19 UTC
ad3769e Neven Sajko 28 December 2023, 21:50:59 UTC `Base`: make `Tuple(::Pair)` type-stable (#52650) Fixes #52636 28 December 2023, 21:50:59 UTC
90ae544 Steven G. Johnson 28 December 2023, 19:18:07 UTC fix typo in NEWS (#52652) Typo from #52461. 28 December 2023, 19:18:07 UTC
e96c13a Ian Butterworth 28 December 2023, 12:42:28 UTC update nthreads info in versioninfo (#52423) Fixes https://github.com/JuliaLang/julia/issues/52404 @nilshg I opted to make it one line as it fits. ``` julia> versioninfo() Julia Version 1.11.0-DEV.1011 Commit bb7091c6f2* (2023-12-04 14:58 UTC) Platform Info: OS: macOS (arm64-apple-darwin23.0.0) CPU: 10 × Apple M2 Pro WORD_SIZE: 64 LLVM: libLLVM-15.0.7 (ORCJIT, apple-m1) Threads: 1 default, 0 interactive, 1 GC (on 6 virtual cores) Environment: JULIA_EDITOR = code ``` 28 December 2023, 12:42:28 UTC
26d0460 Ian Butterworth 28 December 2023, 07:52:18 UTC Show more info on why package precompilation was needed (#52619) 28 December 2023, 07:52:18 UTC
e6e572e Lilith Orion Hafner 28 December 2023, 01:50:02 UTC Temporarily remove failing sorting tests (#52643) Tracked by issue #52642 28 December 2023, 01:50:02 UTC
e7e8b89 Diogo Netto 27 December 2023, 18:59:53 UTC update --gcthreads section in command line options (#52645) Make these consistent with what's shown by `julia --help`. Fixes https://github.com/JuliaLang/www.julialang.org/issues/1997. 27 December 2023, 18:59:53 UTC
66e9410 Jishnu Bhattacharya 27 December 2023, 06:36:28 UTC Add a fully typed Diagonal constructor from `AbstractMatrix`es (#52487) The following works after this PR: ```julia julia> oftype(Diagonal(Float32[1,2]), [1 0; 0 2]) 2×2 Diagonal{Float32, Vector{Float32}}: 1.0 ⋅ ⋅ 2.0 ``` This changes the behavior of the constructor to copy the diagonal, so now ```julia julia> D = Diagonal([1,2]); julia> typeof(D)(D).diag === D.diag false ``` whereas this used to be `true` previously. This probably doesn't matter much, as in most non-trivial cases it'd be copied anyway, and this conversion is unusual in the trivial case. --------- Co-authored-by: Daniel Karrasch <daniel.karrasch@posteo.de> 27 December 2023, 06:36:28 UTC
b4eefd0 Jishnu Bhattacharya 27 December 2023, 06:36:08 UTC Default uplo in symmetric/hermitian (#52605) This makes the function signatures match the respective docstrings, as well as that of `Symmetric/Hermitian`. 27 December 2023, 06:36:08 UTC
713560b Jishnu Bhattacharya 25 December 2023, 12:55:56 UTC Specialize axes for structured matrices (#52480) On master ```julia julia> S = SMatrix{4,4}(1:16); julia> A = StructArray{Complex{Int}}((S,S)); julia> axes(Symmetric(A)) (Base.OneTo(4), Base.OneTo(4)) ``` The static axes are lost. After this, ```julia julia> axes(Symmetric(A)) (SOneTo(4), SOneTo(4)) ``` Similarly, I've added methods for other structured matrix types. These help with other cases like infinite arrays. --------- Co-authored-by: Matt Bauman <mbauman@juliahub.com> 25 December 2023, 12:55:56 UTC
933a83a N5N3 25 December 2023, 12:54:47 UTC Fix inconsistant logical index behavior (#45869) 1. If we use `BitArray`/`Array{Bool}` to index, `to_indices` has an optimiztion for linear-iteratable case. But the corresponding check is not correct. IIUC, this optimization is legal only when the Boolen array is the only index provided. The first commit fix it and widen this optimization to all Boolen array. Before this PR ```julia julia> A = rand(2,3,4); I = rand(Bool,3,4); julia> A[1,I] == A[1,view(I,:,:)] ERROR: BoundsError: attempt to access 2×3×4 Array{Float64, 3} at index [1, 3×4 Matrix{Bool}] ``` After ```julia julia> A = rand(2,3,4); I = rand(Bool,3,4); julia> A[1,I] == A[1,view(I,:,:)] true ``` 2. On master, if the index/array has singleton trailing dimension, boundcheck of logical index show different behavior depending on the number of indexes provided. If there's only one index variable, singleton dimension wil not be ignored. The second commit fix it. (close #45867) --------- Co-authored-by: Matt Bauman <mbauman@gmail.com> 25 December 2023, 12:54:47 UTC
4e4c0e5 Neven Sajko 25 December 2023, 12:53:09 UTC simplification in `permutedims!` (#52623) `strides_1` was never used, and the `@nexprs` that creates `strides_i` can be replaced with `@ntuple`. Fixes #52615, credit: ararslan. 25 December 2023, 12:53:09 UTC
ef549ae Jishnu Bhattacharya 25 December 2023, 12:51:49 UTC Don't access parent of triangular matrix in powm (#52583) Since the values stored in the parent corresponding to the structural zeros of a tridiagonal matrix aren't well-defined, using it in `ldiv!` is a footgun that may lead to heisenbugs (one seen in https://buildkite.com/julialang/julia-master/builds/31285#018c7cc7-6c77-41ac-a01b-1c7d14cb1b15). This PR changes it to using the tridiagonal matrix directly in `ldiv!`, which should lead to predictable results, and be bug-free. The failing tests for #52571 pass locally with this change. 25 December 2023, 12:51:49 UTC
b51b809 Kristoffer Carlsson 23 December 2023, 21:10:19 UTC Warn if an already loaded package is attempted to be loaded from a different path (#44329) 23 December 2023, 21:10:19 UTC
52ff558 Keno Fischer 23 December 2023, 15:03:47 UTC cfg_simplify: Add one more check to avoid merging :leave terminator (#52621) In #52608, I made `:leave` a proper terminator (we already considered it as such during CFG construction, we just didn't maintain that property in the optimizer). As part of this, I adjusted one place in cfg_simplify to avoid merging blocks that end with non-trivial terminators (previously only EnterNode was considered). Turns out there's another one, so fix that as well. 23 December 2023, 15:03:47 UTC
0b5cf42 Keno Fischer 23 December 2023, 12:35:12 UTC lowering: Optimize lowering of tryfinally with trivial finally block (#52593) This optimizes the lowering of a tryfinally block with empty finally block to instead use the try/catch lowering, where the catch block is given as simply `rethrow()`. This is equivalent semantically to try/finally in this case, but the code structure is a lot simpler with fewer basic blocks and without the auxiliary slot for tracking the finally slot. The motivation here is to help the compiler optimize better when using the `@with` macro, which has an empty `finally` block (but uses the scope argument of 'tryfinally). The only problem with this is that it violates the lowering assumptions I made in https://github.com/JuliaLang/julia/pull/52527, so we'll probably need to fix that first. 23 December 2023, 12:35:12 UTC
5111208 Mosè Giordano 23 December 2023, 06:49:04 UTC [LibCURL_jll] Update to v8.5.0 (#52611) 23 December 2023, 06:49:04 UTC
f98b895 Keno Fischer 23 December 2023, 05:08:49 UTC sroa: Better current_scope folding (#52608) Third time's the charm hopefully. This builds on #52527 and addresses the TODO left there by keeping track of the appropriate :scope in sroa as we go along in order to ensure correct current_scope folding, even when the try body is nothrow (which was left as a todo). As a result, we also no longer result on lowering assumptions for this transformation, which enables us to enable the lowering optimization in #52593. 23 December 2023, 05:08:49 UTC
44a7915 Keno Fischer 23 December 2023, 05:07:47 UTC ir: Fix incorrect renaming of phinode values (#52614) This fixes #52610. The underlying issue is a left over OldSSAValue after the adce_pass! (introduced by compaction, it being during adce is incidental). Compaction introduces `OldSSAValue` when it compacts in PhiNodes that reference later SSAValues and adds them to a list to revisit at the end of compaction to fill in the actual renamed result. There are two separate fixes here: 1. If the result of the final revisit is yet another `OldSSAValue`, rename it again. I don't this ordinarily happens at all, but I suppose it is possible in theory during sroa beacuse of the rename-shortcut optimization [1]. However, this is not not what happened here. Instead compaction incorrectly used an OldSSAValue for an already-inserted node, which then ends up in the rename list because we deleted one of the predecessor edges [2]. To fix that we: 2. Fix an issue where we weren't accounting for the possibility of previously pending nodes (which have SSAValues beyond the numbering range of the ordinary statements) in the special already_inserted query in phinode value processing. To fix this, unify the logic with the ordinary `already_inserted` query, which handles this case correctly. [1] https://github.com/JuliaLang/julia/blob/9443c761871c4db9c3213a1e01804286292c3f4d/base/compiler/ssair/passes.jl#L1385 [2] https://github.com/JuliaLang/julia/blob/9443c761871c4db9c3213a1e01804286292c3f4d/base/compiler/ssair/ir.jl#L1556 Co-authored-by: Tim Besard <tim@juliahub.com> 23 December 2023, 05:07:47 UTC
4975a78 Diogo Netto 23 December 2023, 00:11:49 UTC GC page profiler (#52567) Piggybacks in the sweeping phase of the GC to pretty-print a JSON representation of every page in the pool allocator. Usage: ```bash julia> using Profile julia> Profile.take_page_profile("/tmp/test-profile.out") "/tmp/test-profile.out" ``` Output (truncated to one page & after pretty printing): ```json { "address": "0x109dd0000", "object_size": 400, "objects": [ "Task", "Task", "Task", "garbage", "GenericMemory", "garbage", "GenericMemory", "GenericMemory", "garbage", "GenericMemory", "GenericMemory", "Task", "Task", "Task", "garbage", "garbage", "garbage", "String", "garbage", "garbage", "String", "GenericMemory", "GenericMemory", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", "garbage", ] } ``` This proved particularly useful for us when studying fragmentation in some of our workloads, though this profiler may possibly have some repeated functionality compared to the other profilers we already have in `stdlib`. 23 December 2023, 00:11:49 UTC
b97ffd0 Mosè Giordano 22 December 2023, 22:50:03 UTC [MbedTLS_jll] Update to v2.28.6 (#52612) 22 December 2023, 22:50:03 UTC
1a64299 Lilith Orion Hafner 22 December 2023, 20:45:20 UTC Remove flakey sorting test (#52594) 22 December 2023, 20:45:20 UTC
40bc64c Alex Arslan 22 December 2023, 20:21:11 UTC Fix `show` for `MethodList` when methods are from another module (#52354) When a type is defined in one module but its methods are defined elsewhere, `show_method_table` errors due to an incorrect lookup of the defining module used to determine colors for printing. In particular, the code had been assuming that the type is defined in the module in which its constructor's first method (in the sense of `first(methods())`) is defined, which isn't always true. The color used for printing the module name needs to be determined on a per-method basis and can't be correctly done based on the method table's module. For each method, we attempt to derive the module for the method table to which the method was added, then determine whether it's the same as the defining module for the method. Fixes #49382 Fixes #49403 Fixes #52043 Co-Authored-By: Jameson Nash <vtjnash@gmail.com> 22 December 2023, 20:21:11 UTC
9443c76 Tim Besard 22 December 2023, 13:35:14 UTC When setting `JULIA_DEPOT_PATH` to `/path:`, omit the default user depot (#51448) This commit slightly changes how the `DEPOT_PATH` works when overriden using the env var `JULIA_DEPOT_PATH`, now omitting the default user depot when specifying a path. Before: ``` ❯ JULIA_DEPOT_PATH=/foo: \ julia-1.10 -e 'display(DEPOT_PATH)' 4-element Vector{String}: "/foo" "/home/tim/.julia" "/path/to/julia/local/share/julia" "/path/to/julia/share/julia" ``` After: ``` ❯ JULIA_DEPOT_PATH=/foo: \ julia-pr -e 'display(DEPOT_PATH)' 3-element Vector{String}: "/foo" "/path/to/julia/local/share/julia" "/path/to/julia/share/julia" ``` This makes it possibly to create a new isolated depot by simply setting `JULIA_DEPOT_PATH` to `/path:`, while still being able to load resources that are bundled with Julia. For a full discussion, see the PR. 22 December 2023, 13:35:14 UTC
878b0c0 Keno Fischer 22 December 2023, 13:07:20 UTC sroa: More fixes for KeyValue optimization (#52602) Fixes some mistakes in #52542 that led to the following issue: ``` function persistent_dict_elim_multiple_phi2(c::Bool) z = Base.inferencebarrier(1)::Int if c a = Base.PersistentDict(:a => z) else a = Base.PersistentDict(:a => z) end b = Base.PersistentDict(a, :b => 2) return b[:a] end julia> persistent_dict_elim_multiple_phi2(true) ERROR: KeyError: key :a not found Stacktrace: [1] getindex @ Base ./dict.jl:1010 [inlined] [2] persistent_dict_elim_multiple_phi2(c::Bool) @ Main ./REPL[1]:9 [3] top-level scope @ REPL[3]:1 ``` i.e. sroa incorrectly thought the value was not found. 22 December 2023, 13:07:20 UTC
1290b51 Valentin Churavy 22 December 2023, 10:09:56 UTC Lowering: Insert QuoteNode for captured boxed value (#52596) `Core.Box` is not self-quoting so it should be captured in a QuoteNode. This has been benign until the improved effect system, we handle `QuoteNode` of a mutable value as a global access, whereas a direct reference to a value is treated as inaccessible memory. Fixes #52531 --------- Co-authored-by: Gabriel Baraldi <baraldigabriel@gmail.com> Co-authored-by: Shuhei Kadowaki <40514306+aviatesk@users.noreply.github.com> 22 December 2023, 10:09:56 UTC
c1e1d5c Keno Fischer 21 December 2023, 17:50:15 UTC irinterp: Don't give bad answers on encountering try/catch (#52601) We generally don't model try/catch in irinterp, but let's at least add the cases and make them do nothing, rather than assuming these nodes are literals and giving bad type results. Co-authored-by: Shuhei Kadowaki <40514306+aviatesk@users.noreply.github.com> Co-authored-by: Oscar Smith <oscardssmith@gmail.com> 21 December 2023, 17:50:15 UTC
bc979ae Diogo Netto 21 December 2023, 17:12:24 UTC expand GC developer docs (#52340) The previous GC docs are mostly stale now given the recent GC changes. 21 December 2023, 17:12:24 UTC
a1a9ff4 Diogo Netto 21 December 2023, 17:02:45 UTC remove duplicate increment to freecall in jl_gc_free_memory (#52598) Probably a typo. 21 December 2023, 17:02:45 UTC
f2ae45f Tortar 21 December 2023, 14:40:06 UTC Don't use `deepcopy_internal(xi, stackdict)` for isbits fields (#52597) This gives a good speed-up in some common cases: ```julia julia> mutable struct A x::Int end julia> a = A(1) A(1) # before julia> @benchmark deepcopy($a) BenchmarkTools.Trial: 10000 samples with 209 evaluations. Range (min … max): 370.895 ns … 4.573 μs ┊ GC (min … max): 0.00% … 83.23% Time (median): 389.206 ns ┊ GC (median): 0.00% Time (mean ± σ): 406.474 ns ± 136.334 ns ┊ GC (mean ± σ): 1.19% ± 3.34% ▁▁▆█▆▄▆▅▄▃▂▁ ▂ ▆█████████████▇▆▆▅▅▅▅▃▃▃▁▁▁▁▁▁▁▁▁▁▁▁▁▁▁▄▄▆▆▇▇▆▇▆█▇███▇▇▇▇█▇█▇ █ 371 ns Histogram: log(frequency) by time 596 ns < Memory estimate: 352 bytes, allocs estimate: 3. # this pr julia> @benchmark deepcopy($a) BenchmarkTools.Trial: 10000 samples with 964 evaluations. Range (min … max): 80.261 ns … 1.642 μs ┊ GC (min … max): 0.00% … 86.97% Time (median): 87.662 ns ┊ GC (median): 0.00% Time (mean ± σ): 96.426 ns ± 77.467 ns ┊ GC (mean ± σ): 6.20% ± 7.42% ▂█▅▆▁ █████▄▃▃▃▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▁▁▁▂▁▁▁▁▁▁▁▁▂▂▂▂▂▂▂▂▂ ▃ 80.3 ns Histogram: frequency by time 239 ns < Memory estimate: 352 bytes, allocs estimate: 3. julia> mutable struct B x::Int y::Float64 end julia> b = B(1, 1.0) B(1, 1.0) # before julia> @benchmark deepcopy($b) BenchmarkTools.Trial: 10000 samples with 153 evaluations. Range (min … max): 699.569 ns … 9.972 μs ┊ GC (min … max): 0.00% … 89.92% Time (median): 723.804 ns ┊ GC (median): 0.00% Time (mean ± σ): 738.515 ns ± 222.079 ns ┊ GC (mean ± σ): 0.93% ± 2.94% ▂▇█▁ ▂▂▂▃████▆▅▄▅▇▆▅▃▃▃▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▁▁▁▂▁▁▁▁▂▁▂▁▁▁▁▁▁▂▁▁▂▁▂▁▂▂▂▂ ▃ 700 ns Histogram: frequency by time 914 ns < Memory estimate: 384 bytes, allocs estimate: 4. # this pr julia> @benchmark deepcopy($b) BenchmarkTools.Trial: 10000 samples with 956 evaluations. Range (min … max): 91.535 ns … 1.660 μs ┊ GC (min … max): 0.00% … 81.91% Time (median): 99.322 ns ┊ GC (median): 0.00% Time (mean ± σ): 108.450 ns ± 88.399 ns ┊ GC (mean ± σ): 6.97% ± 7.82% ▁▃██▅▂ ▂▂▂▂▃▄▇███████▇▆▅▄▃▃▃▃▃▃▃▃▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▂▁▂▂▂▁▁▁▂ ▃ 91.5 ns Histogram: frequency by time 134 ns < Memory estimate: 384 bytes, allocs estimate: 4. ``` 21 December 2023, 14:40:06 UTC
34d1b71 Lilith Orion Hafner 21 December 2023, 13:15:04 UTC Fix typos CI job for PRs that don't edit any files or do edit binary files (#52600) Co-authored-by: Dilum Aluthge <dilum@aluthge.com> 21 December 2023, 13:15:04 UTC
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