https://github.com/Project-MONAI/MONAI/
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| Revision | Author | Date | Message | Commit Date |
|---|---|---|---|---|
| ec63e06 | YunLiu | 18 March 2024, 03:56:45 UTC | Update to use `log_sigmoid` in `FocalLoss` (#7534) Fixes #7533 ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 18 March 2024, 03:56:45 UTC |
| 6b7568d | Fabian Klopfer | 15 March 2024, 02:19:57 UTC | Fix typo in the PerceptualNetworkType Enum (#7548) Fixes #7547 ### Description Previously it was 'medical_resnet50_23datasets' for both identifier and string, which doesn't correspond to the name in the hubconf.py of Warvito's repo. Now it is the correct version (according to Warvitos repo) 'medicalnet_resnet50_23datasets'. The docs state it correctly already. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ x] New tests added to cover the changes. - [ x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: Fabian Klopfer <fabian.klopfer@ieee.org> | 15 March 2024, 02:19:57 UTC |
| 95f69de | YunLiu | 10 March 2024, 15:21:28 UTC | Fix error in "test_bundle_trt_export" (#7524) Fixes #7523 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 10 March 2024, 15:21:28 UTC |
| e9e2738 | YunLiu | 03 March 2024, 15:09:21 UTC | Add arm support (#7500) Fixes # . ### Description Add arm support ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> | 03 March 2024, 15:09:21 UTC |
| 02c7f53 | dependabot[bot] | 01 March 2024, 08:23:09 UTC | Bump al-cheb/configure-pagefile-action from 1.3 to 1.4 (#7510) Bumps [al-cheb/configure-pagefile-action](https://github.com/al-cheb/configure-pagefile-action) from 1.3 to 1.4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/al-cheb/configure-pagefile-action/releases">al-cheb/configure-pagefile-action's releases</a>.</em></p> <blockquote> <h2>v1.4: Update task node version to 20</h2> <h1>configure-pagefile-action</h1> <p>This action is intended to configure Pagefile size and location for Windows images in GitHub Actions.</p> <h1>Available parameters</h1> <table> <thead> <tr> <th>Argument</th> <th>Description</th> <th>Format</th> <th>Default value</th> </tr> </thead> <tbody> <tr> <td><code>minimum-size</code></td> <td>Set minimum size of Pagefile</td> <td><code>2048MB</code>, <code>4GB</code>, <code>8GB</code> and etc</td> <td><code>8GB</code></td> </tr> <tr> <td><code>maximum-size</code></td> <td>Set maximum size of Pagefile</td> <td>The same like <code>minimum-size</code></td> <td><code>minimum-size</code></td> </tr> <tr> <td><code>disk-root</code></td> <td>Set disk root where Pagefile will be located</td> <td><code>C:</code> or <code>D:</code></td> <td><code>D:</code></td> </tr> </tbody> </table> <h1>Usage</h1> <pre><code>name: CI on: [push] jobs: build: runs-on: windows-latest steps: - name: configure Pagefile uses: al-cheb/configure-pagefile-action@v1.4 with: minimum-size: 8 <pre><code>- name: configure Pagefile uses: al-cheb/configure-pagefile-action@v1.4 with: minimum-size: 8 maximum-size: 16 disk-root: &quot;D:&quot; </code></pre> <p></code></pre></p> <h1>License</h1> <p>The scripts and documentation in this project are released under the <a href="https://github.com/al-cheb/configure-pagefile-action/blob/HEAD/LICENSE">MIT License</a></p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/al-cheb/configure-pagefile-action/commit/a3b6ebd6b634da88790d9c58d4b37a7f4a7b8708"><code>a3b6ebd</code></a> Merge pull request <a href="https://redirect.github.com/al-cheb/configure-pagefile-action/issues/20">#20</a> from mikehardy/mikehardy-patch-1</li> <li><a href="https://github.com/al-cheb/configure-pagefile-action/commit/850626ff7d6f5665848a60cdc3b0ace19fa0b094"><code>850626f</code></a> build(deps): bump javascript dependencies / forward-port as needed</li> <li><a href="https://github.com/al-cheb/configure-pagefile-action/commit/e7aac1b891d29f440ea916231d51d085206f9106"><code>e7aac1b</code></a> fix: use node 20</li> <li><a href="https://github.com/al-cheb/configure-pagefile-action/commit/d940d2434c38e1a228580edc8f9421aafca9800d"><code>d940d24</code></a> build(deps): use v4 of setup-node action, use node 20</li> <li><a href="https://github.com/al-cheb/configure-pagefile-action/commit/dfdc038768fdb21f91ed75a5fa40890fb92f5919"><code>dfdc038</code></a> build(deps): bump actions/checkout from 3 to 4</li> <li>See full diff in <a href="https://github.com/al-cheb/configure-pagefile-action/compare/v1.3...v1.4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 01 March 2024, 08:23:09 UTC |
| 9830525 | Mathijs de Boer | 28 February 2024, 05:10:40 UTC | Add __repr__ and __str__ to Metrics baseclass (#7487) ### Description When training a model using MONAI metrics for experiment tracking, I tend to log which metrics I am using. Unfortunately, just sending the metrics objects to Tensorboard will result in a list like [CustomMetric1, CustomMetric2, <monai.metrics.Metric ...>, etc.] Adding `__repr__` and `__str__` methods to the base class will solve this small annoyance. The current implementation will only return the class name, but if a certain metric would wish to report more data for its `__repr__` string, this can be easily overridden in any subclass. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Signed-off-by: Mathijs de Boer <m.deboer-41@umcutrecht.nl> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Mathijs de Boer <m.deboer-41@umcutrecht.nl> | 28 February 2024, 05:10:40 UTC |
| 7cfa2c9 | Timothy J. Baker | 26 February 2024, 16:32:23 UTC | Add sample_std parameter to RandGaussianNoise. (#7492) Fixes issue #7425 ### Description Add a `sample_std` parameter to `RandGaussianNoise` and `RandGaussianNoised`. When True, the Gaussian's standard deviation is sampled uniformly from 0 to std (i.e., what is currently done). When False, the noise's standard deviation is non-random and set to std. The default for sample_std would be True for backwards compatibility. Changes were based on RandRicianNoise which already has a `sample_std` parameter and is similar to RandGaussianNoise in concept and implementation. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Timothy Baker <bakertim@umich.edu> | 26 February 2024, 16:32:23 UTC |
| 20512d3 | monai-bot | 26 February 2024, 07:01:44 UTC | auto updates (#7495) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 26 February 2024, 07:01:44 UTC |
| f6f9e81 | YunLiu | 23 February 2024, 16:49:00 UTC | Use int16 instead of int8 in `LabelStats` (#7489) Use uint8 instead of int8 in `LabelStats`. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 23 February 2024, 16:49:00 UTC |
| 9c77a04 | YunLiu | 23 February 2024, 03:07:43 UTC | Fix github resource issue when build latest docker (#7450) Fixes #7449 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> | 23 February 2024, 03:07:43 UTC |
| f4103c5 | YunLiu | 22 February 2024, 02:29:13 UTC | Update test_nnunetv2runner (#7483) Fixes #7013 #7478 ### Description replace `predict_from_raw_data` with `nnUNetPredictor` in test_nnunetv2runner ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 22 February 2024, 02:29:13 UTC |
| 1b93988 | YunLiu | 21 February 2024, 13:30:25 UTC | Fix Python 3.12 import AttributeError (#7482) Fixes #7458 ### Description https://github.com/python/cpython/blob/a21c0c7def9a8495f1166d9b434dfc301cb92bff/Lib/importlib/abc.py#L68 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 21 February 2024, 13:30:25 UTC |
| df37a22 | YunLiu | 21 February 2024, 12:48:37 UTC | Skip "test_resize" as a workaround for blossom killed (#7484) workaround for #7445 ### Description `Resize` also uses `GaussianFilter` inside. https://github.com/Project-MONAI/MONAI/blob/50f9aea67fb1ea7967020ad613ce83409261f2de/monai/transforms/spatial/functional.py#L332 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 21 February 2024, 12:48:37 UTC |
| 50f9aea | monai-bot | 20 February 2024, 14:58:30 UTC | auto updates (#7463) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 20 February 2024, 14:58:30 UTC |
| a8080fc | YunLiu | 20 February 2024, 14:18:00 UTC | Skip "test_gaussian_filter" as a workaround for blossom killed (#7474) workaround for #7445 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 20 February 2024, 14:18:00 UTC |
| ff43028 | YunLiu | 07 February 2024, 13:47:23 UTC | Update gdown version (#7448) gdown library has been updated to fix https://github.com/Project-MONAI/MONAI/issues/7383 since https://github.com/wkentaro/gdown/pull/295 Update the gdown version for this PR https://github.com/Project-MONAI/MONAI/pull/7384 ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 07 February 2024, 13:47:23 UTC |
| c27cc98 | Dr. Behrooz Hashemian | 06 February 2024, 08:58:15 UTC | Add support for mlflow experiment name in auto3dseg (#7442) Fixes #7441 This PR enable Auto3DSeg users to manage their runs and experiment more efficiently in MLFlow under arbitrary experiment names, by providing experiment name as an input parameter. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). change). - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. --------- Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 06 February 2024, 08:58:15 UTC |
| ec2cc83 | Ibrahim Hadzic | 06 February 2024, 03:30:53 UTC | Instantiation mode `"partial"` to `"callable"`. Return the `_target_` component as-is when in `_mode_="callable"` and no kwargs are specified (#7413) ### Description A `_target_` component with `_mode_="partial"` will still be wrapped in `functools.partial` even when no kwargs are passed: `functool.partial(component)`. In such cases, the component can just be returned as-is. If you agree with this, I will add tests for it. Thank you! ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Ibrahim Hadzic <ibrahimhadzic45@gmail.com> | 06 February 2024, 03:30:53 UTC |
| 718e4be | monai-bot | 05 February 2024, 15:43:23 UTC | auto updates (#7439) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 05 February 2024, 15:43:23 UTC |
| 33afaef | YunLiu | 02 February 2024, 14:56:30 UTC | Update tensorboard version to fix deadlock (#7435) Fixes #7434 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Mingxin Zheng <18563433+mingxin-zheng@users.noreply.github.com> | 02 February 2024, 14:56:30 UTC |
| aa4f578 | dependabot[bot] | 02 February 2024, 13:29:44 UTC | Bump codecov/codecov-action from 3 to 4 (#7431) Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/codecov/codecov-action/releases">codecov/codecov-action's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <p>v4 of the Codecov Action uses the <a href="https://docs.codecov.com/docs/the-codecov-cli">CLI</a> as the underlying upload. The CLI has helped to power new features including local upload, the global upload token, and new upcoming features.</p> <h2>Breaking Changes</h2> <ul> <li>The Codecov Action runs as a <code>node20</code> action due to <code>node16</code> deprecation. See <a href="https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/">this post from GitHub</a> on how to migrate.</li> <li>Tokenless uploading is unsupported. However, PRs made from forks to the upstream public repos will support tokenless (e.g. contributors to OS projects do not need the upstream repo's Codecov token). This <a href="https://docs.codecov.com/docs/adding-the-codecov-token#github-actions">doc</a> shows instructions on how to add the Codecov token.</li> <li>OS platforms have been added, though some may not be automatically detected. To see a list of platforms, see our <a href="https://cli.codecov.io">CLI download page</a></li> <li>Various arguments to the Action have been changed. Please be aware that the arguments match with the CLI's needs</li> </ul> <p><code>v3</code> versions and below will not have access to CLI features (e.g. global upload token, ATS).</p> <h2>What's Changed</h2> <ul> <li>build(deps): bump openpgp from 5.8.0 to 5.9.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/985">codecov/codecov-action#985</a></li> <li>build(deps): bump actions/checkout from 3.0.0 to 3.5.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1000">codecov/codecov-action#1000</a></li> <li>build(deps): bump ossf/scorecard-action from 2.1.3 to 2.2.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1006">codecov/codecov-action#1006</a></li> <li>build(deps): bump tough-cookie from 4.0.0 to 4.1.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1013">codecov/codecov-action#1013</a></li> <li>build(deps-dev): bump word-wrap from 1.2.3 to 1.2.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1024">codecov/codecov-action#1024</a></li> <li>build(deps): bump node-fetch from 3.3.1 to 3.3.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1031">codecov/codecov-action#1031</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 20.1.4 to 20.4.5 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1032">codecov/codecov-action#1032</a></li> <li>build(deps): bump github/codeql-action from 1.0.26 to 2.21.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1033">codecov/codecov-action#1033</a></li> <li>build commit,report and upload args based on codecovcli by <a href="https://github.com/dana-yaish"><code>@dana-yaish</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/943">codecov/codecov-action#943</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 20.4.5 to 20.5.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1055">codecov/codecov-action#1055</a></li> <li>build(deps): bump github/codeql-action from 2.21.2 to 2.21.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1051">codecov/codecov-action#1051</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 20.5.3 to 20.5.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1058">codecov/codecov-action#1058</a></li> <li>chore(deps): update outdated deps by <a href="https://github.com/thomasrockhu-codecov"><code>@thomasrockhu-codecov</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1059">codecov/codecov-action#1059</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 20.5.4 to 20.5.6 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1060">codecov/codecov-action#1060</a></li> <li>build(deps-dev): bump <code>@typescript-eslint/parser</code> from 6.4.1 to 6.5.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1065">codecov/codecov-action#1065</a></li> <li>build(deps-dev): bump <code>@typescript-eslint/eslint-plugin</code> from 6.4.1 to 6.5.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1064">codecov/codecov-action#1064</a></li> <li>build(deps): bump actions/checkout from 3.5.3 to 3.6.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1063">codecov/codecov-action#1063</a></li> <li>build(deps-dev): bump eslint from 8.47.0 to 8.48.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1061">codecov/codecov-action#1061</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 20.5.6 to 20.5.7 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1062">codecov/codecov-action#1062</a></li> <li>build(deps): bump openpgp from 5.9.0 to 5.10.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1066">codecov/codecov-action#1066</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 20.5.7 to 20.5.9 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1070">codecov/codecov-action#1070</a></li> <li>build(deps): bump github/codeql-action from 2.21.4 to 2.21.5 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1069">codecov/codecov-action#1069</a></li> <li>build(deps-dev): bump <code>@typescript-eslint/eslint-plugin</code> from 6.5.0 to 6.6.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1072">codecov/codecov-action#1072</a></li> <li>Update README.md by <a href="https://github.com/thomasrockhu-codecov"><code>@thomasrockhu-codecov</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1073">codecov/codecov-action#1073</a></li> <li>build(deps-dev): bump <code>@typescript-eslint/parser</code> from 6.5.0 to 6.6.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1071">codecov/codecov-action#1071</a></li> <li>build(deps-dev): bump <code>@vercel/ncc</code> from 0.36.1 to 0.38.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1074">codecov/codecov-action#1074</a></li> <li>build(deps): bump <code>@actions/core</code> from 1.10.0 to 1.10.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1081">codecov/codecov-action#1081</a></li> <li>build(deps-dev): bump <code>@typescript-eslint/eslint-plugin</code> from 6.6.0 to 6.7.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1080">codecov/codecov-action#1080</a></li> <li>build(deps): bump actions/checkout from 3.6.0 to 4.0.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1078">codecov/codecov-action#1078</a></li> <li>build(deps): bump actions/upload-artifact from 3.1.2 to 3.1.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1077">codecov/codecov-action#1077</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 20.5.9 to 20.6.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1075">codecov/codecov-action#1075</a></li> <li>build(deps-dev): bump <code>@typescript-eslint/parser</code> from 6.6.0 to 6.7.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1079">codecov/codecov-action#1079</a></li> <li>build(deps-dev): bump eslint from 8.48.0 to 8.49.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1076">codecov/codecov-action#1076</a></li> <li>use cli instead of node uploader by <a href="https://github.com/dana-yaish"><code>@dana-yaish</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1068">codecov/codecov-action#1068</a></li> <li>chore(release): 4.0.0-beta.1 by <a href="https://github.com/thomasrockhu-codecov"><code>@thomasrockhu-codecov</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1084">codecov/codecov-action#1084</a></li> <li>not adding -n if empty to do-upload command by <a href="https://github.com/dana-yaish"><code>@dana-yaish</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1085">codecov/codecov-action#1085</a></li> <li>4.0.0-beta.2 by <a href="https://github.com/thomasrockhu-codecov"><code>@thomasrockhu-codecov</code></a> in <a href="https://redirect.github.com/codecov/codecov-action/pull/1086">codecov/codecov-action#1086</a></li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md">codecov/codecov-action's changelog</a>.</em></p> <blockquote> <h2>4.0.0-beta.2</h2> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/1085">#1085</a> not adding -n if empty to do-upload command</li> </ul> <h2>4.0.0-beta.1</h2> <p><code>v4</code> represents a move from the <a href="https://github.com/codecov/uploader">universal uploader</a> to the <a href="https://github.com/codecov/codecov-cli">Codecov CLI</a>. Although this will unlock new features for our users, the CLI is not yet at feature parity with the universal uploader.</p> <h3>Breaking Changes</h3> <ul> <li>No current support for <code>aarch64</code> and <code>alpine</code> architectures.</li> <li>Tokenless uploading is unsuported</li> <li>Various arguments to the Action have been removed</li> </ul> <h2>3.1.4</h2> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/967">#967</a> Fix typo in README.md</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/971">#971</a> fix: add back in working dir</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/969">#969</a> fix: CLI option names for uploader</li> </ul> <h3>Dependencies</h3> <ul> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/970">#970</a> build(deps-dev): bump <code>@types/node</code> from 18.15.12 to 18.16.3</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/979">#979</a> build(deps-dev): bump <code>@types/node</code> from 20.1.0 to 20.1.2</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/981">#981</a> build(deps-dev): bump <code>@types/node</code> from 20.1.2 to 20.1.4</li> </ul> <h2>3.1.3</h2> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/960">#960</a> fix: allow for aarch64 build</li> </ul> <h3>Dependencies</h3> <ul> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/957">#957</a> build(deps-dev): bump jest-junit from 15.0.0 to 16.0.0</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/958">#958</a> build(deps): bump openpgp from 5.7.0 to 5.8.0</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/959">#959</a> build(deps-dev): bump <code>@types/node</code> from 18.15.10 to 18.15.12</li> </ul> <h2>3.1.2</h2> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/718">#718</a> Update README.md</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/851">#851</a> Remove unsupported path_to_write_report argument</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/898">#898</a> codeql-analysis.yml</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/901">#901</a> Update README to contain correct information - inputs and negate feature</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/955">#955</a> fix: add in all the extra arguments for uploader</li> </ul> <h3>Dependencies</h3> <ul> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/819">#819</a> build(deps): bump openpgp from 5.4.0 to 5.5.0</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/835">#835</a> build(deps): bump node-fetch from 3.2.4 to 3.2.10</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/840">#840</a> build(deps): bump ossf/scorecard-action from 1.1.1 to 2.0.4</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/841">#841</a> build(deps): bump <code>@actions/core</code> from 1.9.1 to 1.10.0</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/843">#843</a> build(deps): bump <code>@actions/github</code> from 5.0.3 to 5.1.1</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/869">#869</a> build(deps): bump node-fetch from 3.2.10 to 3.3.0</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/872">#872</a> build(deps-dev): bump jest-junit from 13.2.0 to 15.0.0</li> <li><a href="https://redirect.github.com/codecov/codecov-action/issues/879">#879</a> build(deps): bump decode-uri-component from 0.2.0 to 0.2.2</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/codecov/codecov-action/commit/f30e4959ba63075080d4f7f90cacc18d9f3fafd7"><code>f30e495</code></a> fix: update action.yml (<a href="https://redirect.github.com/codecov/codecov-action/issues/1240">#1240</a>)</li> <li><a href="https://github.com/codecov/codecov-action/commit/a7b945cea47ad44d8340fae2b004cb982191264f"><code>a7b945c</code></a> fix: allow for other archs (<a href="https://redirect.github.com/codecov/codecov-action/issues/1239">#1239</a>)</li> <li><a href="https://github.com/codecov/codecov-action/commit/98ab2c591b94478f4c3606d68ff73601df85ec43"><code>98ab2c5</code></a> Update package.json (<a href="https://redirect.github.com/codecov/codecov-action/issues/1238">#1238</a>)</li> <li><a href="https://github.com/codecov/codecov-action/commit/43235cc5aeeafd8aeb836fe7d647599acead161c"><code>43235cc</code></a> Update README.md (<a href="https://redirect.github.com/codecov/codecov-action/issues/1237">#1237</a>)</li> <li><a href="https://github.com/codecov/codecov-action/commit/0cf8684c821546a4e0c8c9a4cf4f21a7a0c5014b"><code>0cf8684</code></a> chore(ci): bump to node20 (<a href="https://redirect.github.com/codecov/codecov-action/issues/1236">#1236</a>)</li> <li><a href="https://github.com/codecov/codecov-action/commit/8e1e730371bf82c744e8ca9aa469e2b7011542ce"><code>8e1e730</code></a> build(deps-dev): bump <code>@typescript-eslint/eslint-plugin</code> from 6.19.1 to 6.20.0 ...</li> <li><a href="https://github.com/codecov/codecov-action/commit/61293af0e8288c75266030376a088c781ec81c18"><code>61293af</code></a> build(deps-dev): bump <code>@typescript-eslint/parser</code> from 6.19.1 to 6.20.0 (<a href="https://redirect.github.com/codecov/codecov-action/issues/1235">#1235</a>)</li> <li><a href="https://github.com/codecov/codecov-action/commit/7a070cbe5b1002a522fa2d9446be76dd6abb709c"><code>7a070cb</code></a> build(deps): bump github/codeql-action from 3.23.1 to 3.23.2 (<a href="https://redirect.github.com/codecov/codecov-action/issues/1231">#1231</a>)</li> <li><a href="https://github.com/codecov/codecov-action/commit/909716592cc1daab655af36c98983bea3bca03e8"><code>9097165</code></a> build(deps): bump actions/upload-artifact from 4.2.0 to 4.3.0 (<a href="https://redirect.github.com/codecov/codecov-action/issues/1232">#1232</a>)</li> <li><a href="https://github.com/codecov/codecov-action/commit/ac042eaf0f05ddb0e0049e8761603887a080adc3"><code>ac042ea</code></a> build(deps-dev): bump <code>@typescript-eslint/eslint-plugin</code> from 6.19.0 to 6.19.1 ...</li> <li>Additional commits viewable in <a href="https://github.com/codecov/codecov-action/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 02 February 2024, 13:29:44 UTC |
| 5301443 | dependabot[bot] | 02 February 2024, 09:11:02 UTC | Bump actions/cache from 3 to 4 (#7430) Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/cache/releases">actions/cache's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <ul> <li>Update action to node20 by <a href="https://github.com/takost"><code>@takost</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1284">actions/cache#1284</a></li> <li>feat: save-always flag by <a href="https://github.com/to-s"><code>@to-s</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1242">actions/cache#1242</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/takost"><code>@takost</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1284">actions/cache#1284</a></li> <li><a href="https://github.com/to-s"><code>@to-s</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1242">actions/cache#1242</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/cache/compare/v3...v4.0.0">https://github.com/actions/cache/compare/v3...v4.0.0</a></p> <h2>v3.3.3</h2> <h2>What's Changed</h2> <ul> <li>Cache v3.3.3 by <a href="https://github.com/robherley"><code>@robherley</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1302">actions/cache#1302</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/robherley"><code>@robherley</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1302">actions/cache#1302</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/cache/compare/v3...v3.3.3">https://github.com/actions/cache/compare/v3...v3.3.3</a></p> <h2>v3.3.2</h2> <h2>What's Changed</h2> <ul> <li>Fixed readme with new segment timeout values by <a href="https://github.com/kotewar"><code>@kotewar</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1133">actions/cache#1133</a></li> <li>Readme fixes by <a href="https://github.com/kotewar"><code>@kotewar</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1134">actions/cache#1134</a></li> <li>Updated description of the lookup-only input for main action by <a href="https://github.com/kotewar"><code>@kotewar</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1130">actions/cache#1130</a></li> <li>Change two new actions mention as quoted text by <a href="https://github.com/bishal-pdMSFT"><code>@bishal-pdMSFT</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1131">actions/cache#1131</a></li> <li>Update Cross-OS Caching tips by <a href="https://github.com/pdotl"><code>@pdotl</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1122">actions/cache#1122</a></li> <li>Bazel example (Take <a href="https://redirect.github.com/actions/cache/issues/2">#2</a>️⃣) by <a href="https://github.com/vorburger"><code>@vorburger</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1132">actions/cache#1132</a></li> <li>Remove actions to add new PRs and issues to a project board by <a href="https://github.com/jorendorff"><code>@jorendorff</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1187">actions/cache#1187</a></li> <li>Consume latest toolkit and fix dangling promise bug by <a href="https://github.com/chkimes"><code>@chkimes</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1217">actions/cache#1217</a></li> <li>Bump action version to 3.3.2 by <a href="https://github.com/bethanyj28"><code>@bethanyj28</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1236">actions/cache#1236</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/vorburger"><code>@vorburger</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1132">actions/cache#1132</a></li> <li><a href="https://github.com/jorendorff"><code>@jorendorff</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1187">actions/cache#1187</a></li> <li><a href="https://github.com/chkimes"><code>@chkimes</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1217">actions/cache#1217</a></li> <li><a href="https://github.com/bethanyj28"><code>@bethanyj28</code></a> made their first contribution in <a href="https://redirect.github.com/actions/cache/pull/1236">actions/cache#1236</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/cache/compare/v3...v3.3.2">https://github.com/actions/cache/compare/v3...v3.3.2</a></p> <h2>v3.3.1</h2> <h2>What's Changed</h2> <ul> <li>Reduced download segment size to 128 MB and timeout to 10 minutes by <a href="https://github.com/kotewar"><code>@kotewar</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1129">actions/cache#1129</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/cache/compare/v3...v3.3.1">https://github.com/actions/cache/compare/v3...v3.3.1</a></p> <h2>v3.3.0</h2> <h2>What's Changed</h2> <ul> <li>Bug: Permission is missing in cache delete example by <a href="https://github.com/kotokaze"><code>@kotokaze</code></a> in <a href="https://redirect.github.com/actions/cache/pull/1123">actions/cache#1123</a></li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/actions/cache/blob/main/RELEASES.md">actions/cache's changelog</a>.</em></p> <blockquote> <h1>Releases</h1> <h3>3.0.0</h3> <ul> <li>Updated minimum runner version support from node 12 -> node 16</li> </ul> <h3>3.0.1</h3> <ul> <li>Added support for caching from GHES 3.5.</li> <li>Fixed download issue for files > 2GB during restore.</li> </ul> <h3>3.0.2</h3> <ul> <li>Added support for dynamic cache size cap on GHES.</li> </ul> <h3>3.0.3</h3> <ul> <li>Fixed avoiding empty cache save when no files are available for caching. (<a href="https://redirect.github.com/actions/cache/issues/624">issue</a>)</li> </ul> <h3>3.0.4</h3> <ul> <li>Fixed tar creation error while trying to create tar with path as <code>~/</code> home folder on <code>ubuntu-latest</code>. (<a href="https://redirect.github.com/actions/cache/issues/689">issue</a>)</li> </ul> <h3>3.0.5</h3> <ul> <li>Removed error handling by consuming actions/cache 3.0 toolkit, Now cache server error handling will be done by toolkit. (<a href="https://redirect.github.com/actions/cache/pull/834">PR</a>)</li> </ul> <h3>3.0.6</h3> <ul> <li>Fixed <a href="https://redirect.github.com/actions/cache/issues/809">#809</a> - zstd -d: no such file or directory error</li> <li>Fixed <a href="https://redirect.github.com/actions/cache/issues/833">#833</a> - cache doesn't work with github workspace directory</li> </ul> <h3>3.0.7</h3> <ul> <li>Fixed <a href="https://redirect.github.com/actions/cache/issues/810">#810</a> - download stuck issue. A new timeout is introduced in the download process to abort the download if it gets stuck and doesn't finish within an hour.</li> </ul> <h3>3.0.8</h3> <ul> <li>Fix zstd not working for windows on gnu tar in issues <a href="https://redirect.github.com/actions/cache/issues/888">#888</a> and <a href="https://redirect.github.com/actions/cache/issues/891">#891</a>.</li> <li>Allowing users to provide a custom timeout as input for aborting download of a cache segment using an environment variable <code>SEGMENT_DOWNLOAD_TIMEOUT_MINS</code>. Default is 60 minutes.</li> </ul> <h3>3.0.9</h3> <ul> <li>Enhanced the warning message for cache unavailablity in case of GHES.</li> </ul> <h3>3.0.10</h3> <ul> <li>Fix a bug with sorting inputs.</li> <li>Update definition for restore-keys in README.md</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/cache/commit/13aacd865c20de90d75de3b17ebe84f7a17d57d2"><code>13aacd8</code></a> Merge pull request <a href="https://redirect.github.com/actions/cache/issues/1242">#1242</a> from to-s/main</li> <li><a href="https://github.com/actions/cache/commit/53b35c543921fe2e8b288765ff817de9de8d906f"><code>53b35c5</code></a> Merge branch 'main' into main</li> <li><a href="https://github.com/actions/cache/commit/65b8989fab3bb394817bdb845a453dff480c2b51"><code>65b8989</code></a> Merge pull request <a href="https://redirect.github.com/actions/cache/issues/1284">#1284</a> from takost/update-to-node-20</li> <li><a href="https://github.com/actions/cache/commit/d0be34d54485f31ca2ccbe66e6ea3d96544a807b"><code>d0be34d</code></a> Fix dist</li> <li><a href="https://github.com/actions/cache/commit/66cf064d47313d2cccf392d01bd10925da2bd072"><code>66cf064</code></a> Merge branch 'main' into update-to-node-20</li> <li><a href="https://github.com/actions/cache/commit/1326563738ddb735c5f2ce85cba8c79f33b728cd"><code>1326563</code></a> Merge branch 'main' into main</li> <li><a href="https://github.com/actions/cache/commit/e71876755e268d6cc25a5d3e3c46ae447e35290a"><code>e718767</code></a> Fix format</li> <li><a href="https://github.com/actions/cache/commit/01229828ffa049a8dee4db27bcb23ed33f2b451f"><code>0122982</code></a> Apply workaround for earlyExit</li> <li><a href="https://github.com/actions/cache/commit/3185ecfd6135856ca6d904ae032cff4f39b8b365"><code>3185ecf</code></a> Update "only-" actions to node20</li> <li><a href="https://github.com/actions/cache/commit/25618a0a675e8447e5ffc8ed9b7ddb2aaf927f65"><code>25618a0</code></a> Bump version</li> <li>Additional commits viewable in <a href="https://github.com/actions/cache/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 02 February 2024, 09:11:02 UTC |
| 6ea3e39 | dependabot[bot] | 02 February 2024, 08:14:04 UTC | Bump peter-evans/create-or-update-comment from 3 to 4 (#7429) Bumps [peter-evans/create-or-update-comment](https://github.com/peter-evans/create-or-update-comment) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/peter-evans/create-or-update-comment/releases">peter-evans/create-or-update-comment's releases</a>.</em></p> <blockquote> <h2>Create or Update Comment v4.0.0</h2> <p>⚙️ Updated runtime to Node.js 20</p> <ul> <li>The action now requires a minimum version of <a href="https://github.com/actions/runner/releases/tag/v2.308.0">v2.308.0</a> for the Actions runner. Update self-hosted runners to v2.308.0 or later to ensure compatibility.</li> </ul> <h2>What's Changed</h2> <ul> <li>build(deps): bump actions/setup-node from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/273">peter-evans/create-or-update-comment#273</a></li> <li>build(deps-dev): bump <code>@vercel/ncc</code> from 0.38.0 to 0.38.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/274">peter-evans/create-or-update-comment#274</a></li> <li>build(deps-dev): bump eslint-plugin-jest from 27.4.2 to 27.4.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/276">peter-evans/create-or-update-comment#276</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.5 to 18.18.6 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/277">peter-evans/create-or-update-comment#277</a></li> <li>build(deps-dev): bump eslint from 8.51.0 to 8.52.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/275">peter-evans/create-or-update-comment#275</a></li> <li>build(deps-dev): bump eslint-plugin-jest from 27.4.3 to 27.6.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/278">peter-evans/create-or-update-comment#278</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.6 to 18.18.8 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/279">peter-evans/create-or-update-comment#279</a></li> <li>build(deps-dev): bump eslint from 8.52.0 to 8.53.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/280">peter-evans/create-or-update-comment#280</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.8 to 18.18.9 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/281">peter-evans/create-or-update-comment#281</a></li> <li>build(deps-dev): bump prettier from 3.0.3 to 3.1.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/282">peter-evans/create-or-update-comment#282</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.9 to 18.18.12 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/283">peter-evans/create-or-update-comment#283</a></li> <li>build(deps-dev): bump eslint from 8.53.0 to 8.54.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/284">peter-evans/create-or-update-comment#284</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.12 to 18.18.13 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/285">peter-evans/create-or-update-comment#285</a></li> <li>build(deps-dev): bump eslint from 8.54.0 to 8.55.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/286">peter-evans/create-or-update-comment#286</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.18.13 to 18.19.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/287">peter-evans/create-or-update-comment#287</a></li> <li>build(deps): bump chuhlomin/render-template from 1.8 to 1.9 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/288">peter-evans/create-or-update-comment#288</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.2 to 18.19.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/289">peter-evans/create-or-update-comment#289</a></li> <li>build(deps-dev): bump prettier from 3.1.0 to 3.1.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/290">peter-evans/create-or-update-comment#290</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/292">peter-evans/create-or-update-comment#292</a></li> <li>build(deps-dev): bump eslint from 8.55.0 to 8.56.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/293">peter-evans/create-or-update-comment#293</a></li> <li>build(deps): bump actions/download-artifact from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/295">peter-evans/create-or-update-comment#295</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.1.0 to 5.1.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/296">peter-evans/create-or-update-comment#296</a></li> <li>build(deps-dev): bump eslint-plugin-jest from 27.6.0 to 27.6.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/297">peter-evans/create-or-update-comment#297</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.3 to 18.19.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/298">peter-evans/create-or-update-comment#298</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/299">peter-evans/create-or-update-comment#299</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.4 to 18.19.6 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/300">peter-evans/create-or-update-comment#300</a></li> <li>build(deps-dev): bump prettier from 3.1.1 to 3.2.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/301">peter-evans/create-or-update-comment#301</a></li> <li>build(deps-dev): bump eslint-plugin-jest from 27.6.1 to 27.6.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/302">peter-evans/create-or-update-comment#302</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.6 to 18.19.7 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/303">peter-evans/create-or-update-comment#303</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 18.19.7 to 18.19.8 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/304">peter-evans/create-or-update-comment#304</a></li> <li>build(deps-dev): bump prettier from 3.2.3 to 3.2.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/305">peter-evans/create-or-update-comment#305</a></li> <li>feat: update runtime to node 20 by <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/306">peter-evans/create-or-update-comment#306</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/create-or-update-comment/compare/v3.1.0...v4.0.0">https://github.com/peter-evans/create-or-update-comment/compare/v3.1.0...v4.0.0</a></p> <h2>Create or Update Comment v3.1.0</h2> <h2>What's Changed</h2> <ul> <li>Add truncate warning to body of comment by <a href="https://github.com/ethanmdavidson"><code>@ethanmdavidson</code></a> and <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/create-or-update-comment/pull/272">peter-evans/create-or-update-comment#272</a></li> <li>46 dependency updates by <a href="https://github.com/dependabot"><code>@dependabot</code></a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/create-or-update-comment/compare/v3.0.2...v3.1.0">https://github.com/peter-evans/create-or-update-comment/compare/v3.0.2...v3.1.0</a></p> <h2>Create or Update Comment v3.0.2</h2> <h2>What's Changed</h2> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/71345be0265236311c031f5c7866368bd1eff043"><code>71345be</code></a> feat: update runtime to node 20 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/306">#306</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/d41bfe36e5af6ca183ce8b04db32e4aa6412e693"><code>d41bfe3</code></a> build(deps-dev): bump prettier from 3.2.3 to 3.2.4 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/305">#305</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/73b4b9e4e37f8cbefbb82ca2abd9085a1afa1562"><code>73b4b9e</code></a> build(deps-dev): bump <code>@types/node</code> from 18.19.7 to 18.19.8 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/304">#304</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/b865fac7facb67bed02e0032aedefe6acf790c75"><code>b865fac</code></a> build(deps-dev): bump <code>@types/node</code> from 18.19.6 to 18.19.7 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/303">#303</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/52b668a9280a255397527f4131ff02f5005274c8"><code>52b668a</code></a> build(deps-dev): bump eslint-plugin-jest from 27.6.1 to 27.6.3 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/302">#302</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/974f56a1c3e9a9d05f2847c575dccf35c038e80e"><code>974f56a</code></a> build(deps-dev): bump prettier from 3.1.1 to 3.2.3 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/301">#301</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/2cbfe8b17bb3ba59cdb477ae1d88d14caa96100e"><code>2cbfe8b</code></a> build(deps-dev): bump <code>@types/node</code> from 18.19.4 to 18.19.6 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/300">#300</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/761872a701dedf6fcfe4c794d7e117dfbba8a4fb"><code>761872a</code></a> build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/299">#299</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/72c3238a4904d35331b8ad94c0eb21d799fb86c4"><code>72c3238</code></a> build(deps-dev): bump <code>@types/node</code> from 18.19.3 to 18.19.4 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/298">#298</a>)</li> <li><a href="https://github.com/peter-evans/create-or-update-comment/commit/07daf7bbdb1bf17ee35e4a8f3a541ecb83c0253d"><code>07daf7b</code></a> build(deps-dev): bump eslint-plugin-jest from 27.6.0 to 27.6.1 (<a href="https://redirect.github.com/peter-evans/create-or-update-comment/issues/297">#297</a>)</li> <li>Additional commits viewable in <a href="https://github.com/peter-evans/create-or-update-comment/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 02 February 2024, 08:14:04 UTC |
| 6def75e | dependabot[bot] | 01 February 2024, 13:53:01 UTC | Bump peter-evans/slash-command-dispatch from 3.0.2 to 4.0.0 (#7428) Bumps [peter-evans/slash-command-dispatch](https://github.com/peter-evans/slash-command-dispatch) from 3.0.2 to 4.0.0. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/peter-evans/slash-command-dispatch/releases">peter-evans/slash-command-dispatch's releases</a>.</em></p> <blockquote> <h2>Slash Command Dispatch v4.0.0</h2> <p>⚙️ Updated runtime to Node.js 20</p> <ul> <li>The action now requires a minimum version of <a href="https://github.com/actions/runner/releases/tag/v2.308.0">v2.308.0</a> for the Actions runner. Update self-hosted runners to v2.308.0 or later to ensure compatibility.</li> </ul> <h2>What's Changed</h2> <ul> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.67 to 16.18.68 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/302">peter-evans/slash-command-dispatch#302</a></li> <li>build(deps-dev): bump prettier from 3.1.0 to 3.1.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/303">peter-evans/slash-command-dispatch#303</a></li> <li>build(deps-dev): bump jest-circus from 27.4.2 to 27.5.1 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/176">peter-evans/slash-command-dispatch#176</a></li> <li>build(deps): bump actions/download-artifact from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/304">peter-evans/slash-command-dispatch#304</a></li> <li>build(deps): bump actions/upload-artifact from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/305">peter-evans/slash-command-dispatch#305</a></li> <li>build(deps-dev): bump eslint from 8.55.0 to 8.56.0 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/306">peter-evans/slash-command-dispatch#306</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/308">peter-evans/slash-command-dispatch#308</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.68 to 16.18.69 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/309">peter-evans/slash-command-dispatch#309</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.69 to 16.18.70 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/310">peter-evans/slash-command-dispatch#310</a></li> <li>build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/311">peter-evans/slash-command-dispatch#311</a></li> <li>build(deps-dev): bump prettier from 3.1.1 to 3.2.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/312">peter-evans/slash-command-dispatch#312</a></li> <li>build(deps-dev): bump prettier from 3.2.2 to 3.2.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/314">peter-evans/slash-command-dispatch#314</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.70 to 16.18.74 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/315">peter-evans/slash-command-dispatch#315</a></li> <li>build(deps): bump peter-evans/create-or-update-comment from 3 to 4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/317">peter-evans/slash-command-dispatch#317</a></li> <li>build(deps-dev): bump <code>@types/node</code> from 16.18.74 to 16.18.76 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/318">peter-evans/slash-command-dispatch#318</a></li> <li>feat: update runtime to node 20 by <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/316">peter-evans/slash-command-dispatch#316</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0">https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0</a></p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/13bc09769d122a64f75aa5037256f6f2d78be8c4"><code>13bc097</code></a> feat: update runtime to node 20 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/316">#316</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/128d8b927253aae5457641113bd796a851741cda"><code>128d8b9</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.74 to 16.18.76 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/318">#318</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/df481df93d05f3a8098480367110c4ada97af98b"><code>df481df</code></a> build(deps): bump peter-evans/create-or-update-comment from 3 to 4 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/317">#317</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/d4579a0d226a3b6e976c29c768ccee3af222d281"><code>d4579a0</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.70 to 16.18.74 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/315">#315</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/8f053eaa2e080b0369bdd513c863dd7b147abfbe"><code>8f053ea</code></a> build(deps-dev): bump prettier from 3.2.2 to 3.2.4 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/314">#314</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/b3eb7837603d93c13112e589f373861dd9092f17"><code>b3eb783</code></a> build(deps-dev): bump prettier from 3.1.1 to 3.2.2 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/312">#312</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/c0334d0fedf1c486175ac2a034431ce86ca29a5e"><code>c0334d0</code></a> build(deps-dev): bump eslint-plugin-prettier from 5.1.2 to 5.1.3 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/311">#311</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/e627c61300384b5d34daa0160cec6013fdcae2f2"><code>e627c61</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.69 to 16.18.70 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/310">#310</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/5c23a33777cbce2760bfa697c816d136b265f92a"><code>5c23a33</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.68 to 16.18.69 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/309">#309</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/8dd62d5c459412393c923fd6a95342e1838b331b"><code>8dd62d5</code></a> build(deps-dev): bump eslint-plugin-prettier from 5.0.1 to 5.1.2 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/308">#308</a>)</li> <li>Additional commits viewable in <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.2...v4.0.0">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 01 February 2024, 13:53:01 UTC |
| cd36c1c | YunLiu | 01 February 2024, 11:47:32 UTC | update `rm -rf /opt/hostedtoolcache` avoid change the python version (#7424) Fixes #7416 ### Description update `rm -rf /opt/hostedtoolcache` avoid change the python version ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 01 February 2024, 11:47:32 UTC |
| df4cf92 | YunLiu | 30 January 2024, 01:42:03 UTC | Ignore E704 after update black (#7422) Fixes #7421 ### Description https://pypi.org/project/black/24.1.1/ ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 30 January 2024, 01:42:03 UTC |
| 6c9e49e | YunLiu | 25 January 2024, 01:47:36 UTC | Fix Incorrect updated affine in `NrrdReader` and update docstring in `ITKReader` (#7415) Fixes #7414 Fixes #7371 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 25 January 2024, 01:47:36 UTC |
| abe2e31 | YunLiu | 22 January 2024, 15:58:29 UTC | Fix CUDA_VISIBLE_DEVICES setting ignored (#7408) Fixes #7407 ### Description Move `optional import cucim` inside the function to avoid using all GPUs. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> | 22 January 2024, 15:58:29 UTC |
| facf176 | YunLiu | 19 January 2024, 08:00:13 UTC | Add `compile` support in `SupervisedTrainer` and `SupervisedEvaluator` (#7375) Fixes # . ### Description Add `compile` support in `SupervisedTrainer` and `SupervisedEvaluator`. Convert to `torch.Tensor` internally. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> | 19 January 2024, 08:00:13 UTC |
| 80be1c3 | axel.vlaminck | 18 January 2024, 17:07:22 UTC | Track applied operations in image filter (#7395) Fixes #7394 ### Description When ImageFilter is in the transformation sequence it didn't pass the applied_operations. Now it is passed when present. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: axel.vlaminck <axel.vlaminck@gmail.com> | 18 January 2024, 17:07:22 UTC |
| 78295c7 | YunLiu | 18 January 2024, 10:01:02 UTC | Fix Premerge (#7397) Fixes #7396 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 18 January 2024, 10:01:02 UTC |
| 25f1901 | YunLiu | 12 January 2024, 12:25:42 UTC | Pin gdown version to v4.6.3 (#7384) Workaround for #7382 #7383 ### Description Based on the comment [here](https://github.com/wkentaro/gdown/issues/291#issuecomment-1887060708), pin the gdown version as a workaround. Will review this one once gdown has some update internal. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 12 January 2024, 12:25:42 UTC |
| e1ffa7e | Kaibo Tang | 10 January 2024, 03:41:30 UTC | 7380 mention demo in bending energy and diffusion docstrings (#7381) Fixes #7380. ### Description Mention [demo](https://github.com/Project-MONAI/tutorials/blob/main/modules/bending_energy_diffusion_loss_notes.ipynb) in bending energy and diffusion docstrings. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: kaibo <ktang@unc.edu> | 10 January 2024, 03:41:30 UTC |
| d7137cf | YunLiu | 09 January 2024, 03:13:14 UTC | Fix incorrectly size compute in auto3dseg analyzer (#7374) Fixes #7222 ### Description remove int convert here. https://github.com/Project-MONAI/MONAI/blob/8fa6931b14ba9617a595fff1d396ac44cc82e207/monai/auto3dseg/analyzer.py#L259 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 09 January 2024, 03:13:14 UTC |
| 445d750 | YunLiu | 08 January 2024, 03:18:45 UTC | Give more useful exception when batch is considered during matrix multiplication (#7326) Fixes #7323 ### Description Give more useful exception when batch is considered during matrix multiplication. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> | 08 January 2024, 03:18:45 UTC |
| 8fa6931 | dependabot[bot] | 03 January 2024, 02:41:55 UTC | Bump peter-evans/slash-command-dispatch from 3.0.1 to 3.0.2 (#7353) Bumps [peter-evans/slash-command-dispatch](https://github.com/peter-evans/slash-command-dispatch) from 3.0.1 to 3.0.2. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/peter-evans/slash-command-dispatch/releases">peter-evans/slash-command-dispatch's releases</a>.</em></p> <blockquote> <h2>Slash Command Dispatch v3.0.2</h2> <h2>What's Changed</h2> <ul> <li>fix: replace use of any type by <a href="https://github.com/peter-evans"><code>@peter-evans</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/152">peter-evans/slash-command-dispatch#152</a></li> <li>fixing link to <code>Get a pull request</code> by <a href="https://github.com/Borda"><code>@Borda</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/270">peter-evans/slash-command-dispatch#270</a></li> <li>Update getting-started.md due to changes in Github UI by <a href="https://github.com/martin-displayr"><code>@martin-displayr</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/289">peter-evans/slash-command-dispatch#289</a></li> <li>[Security] Fix GraphQL query to get a collaborator's permission by <a href="https://github.com/0xn3va"><code>@0xn3va</code></a> in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/301">peter-evans/slash-command-dispatch#301</a></li> <li>129 dependency updates by <a href="https://github.com/dependabot"><code>@dependabot</code></a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/Borda"><code>@Borda</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/270">peter-evans/slash-command-dispatch#270</a></li> <li><a href="https://github.com/martin-displayr"><code>@martin-displayr</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/289">peter-evans/slash-command-dispatch#289</a></li> <li><a href="https://github.com/0xn3va"><code>@0xn3va</code></a> made their first contribution in <a href="https://redirect.github.com/peter-evans/slash-command-dispatch/pull/301">peter-evans/slash-command-dispatch#301</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2">https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2</a></p> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/f996d7b7aae9059759ac55e978cff76d91853301"><code>f996d7b</code></a> Fix the CollaboratorPermission GraphQL query (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/301">#301</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/05b97d641c7ed206082e7984193d314070260d44"><code>05b97d6</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.65 to 16.18.67 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/300">#300</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/8e7007329b5b0d971d44b9558606eed52edbdda6"><code>8e70073</code></a> build(deps-dev): bump eslint from 8.54.0 to 8.55.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/299">#299</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/bd00135609f8bb0e709eea67f2a294f928fd1e7a"><code>bd00135</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.62 to 16.18.65 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/298">#298</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/ee873b6d3d1e6ae67120bcfb3e807c1d11502741"><code>ee873b6</code></a> build(deps-dev): bump eslint from 8.53.0 to 8.54.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/296">#296</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/44abc47f988dc0de6261fb54747b79de67b6af0d"><code>44abc47</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.61 to 16.18.62 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/295">#295</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/19ad7b830c1554acf2ccefe7f3ff5566750d5e9b"><code>19ad7b8</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.60 to 16.18.61 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/294">#294</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/29a9815e9ffe9a5b9b4367e4b76770bcb468a7e7"><code>29a9815</code></a> build(deps-dev): bump prettier from 3.0.3 to 3.1.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/293">#293</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/ade03097a3cb6e69e3ed86210ec745493dacf6bc"><code>ade0309</code></a> build(deps-dev): bump eslint from 8.52.0 to 8.53.0 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/292">#292</a>)</li> <li><a href="https://github.com/peter-evans/slash-command-dispatch/commit/fc8222e6761738cc303ace6ed030f7fe63d6da0c"><code>fc8222e</code></a> build(deps-dev): bump <code>@types/node</code> from 16.18.59 to 16.18.60 (<a href="https://redirect.github.com/peter-evans/slash-command-dispatch/issues/291">#291</a>)</li> <li>Additional commits viewable in <a href="https://github.com/peter-evans/slash-command-dispatch/compare/v3.0.1...v3.0.2">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 03 January 2024, 02:41:55 UTC |
| db6e81d | dependabot[bot] | 02 January 2024, 15:42:25 UTC | Bump actions/download-artifact from 3 to 4 (#7352) Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/download-artifact/releases">actions/download-artifact's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <p>The release of upload-artifact@v4 and download-artifact@v4 are major changes to the backend architecture of Artifacts. They have numerous performance and behavioral improvements.</p> <p>For more information, see the <a href="https://github.com/actions/toolkit/tree/main/packages/artifact"><code>@actions/artifact</code></a> documentation.</p> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/bflad"><code>@bflad</code></a> made their first contribution in <a href="https://redirect.github.com/actions/download-artifact/pull/194">actions/download-artifact#194</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/download-artifact/compare/v3...v4.0.0">https://github.com/actions/download-artifact/compare/v3...v4.0.0</a></p> <h2>v3.0.2</h2> <ul> <li>Bump <code>@actions/artifact</code> to v1.1.1 - <a href="https://redirect.github.com/actions/download-artifact/pull/195">actions/download-artifact#195</a></li> <li>Fixed a bug in Node16 where if an HTTP download finished too quickly (<1ms, e.g. when it's mocked) we attempt to delete a temp file that has not been created yet <a href="hhttps://redirect.github.com/actions/toolkit/pull/1278">actions/toolkit#1278</a></li> </ul> <h2>v3.0.1</h2> <ul> <li><a href="https://redirect.github.com/actions/download-artifact/pull/178">Bump <code>@actions/core</code> to 1.10.0</a></li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/download-artifact/commit/f44cd7b40bfd40b6aa1cc1b9b5b7bf03d3c67110"><code>f44cd7b</code></a> Merge pull request <a href="https://redirect.github.com/actions/download-artifact/issues/259">#259</a> from actions/robherley/glob-downloads</li> <li><a href="https://github.com/actions/download-artifact/commit/3181fe853d2c9a606cd326853bf4c5b8ced5df02"><code>3181fe8</code></a> add some migration docs</li> <li><a href="https://github.com/actions/download-artifact/commit/aaaac7b403f278b6b7eebdca69ca1658616f1c57"><code>aaaac7b</code></a> licensed cache</li> <li><a href="https://github.com/actions/download-artifact/commit/7c9182f0e18dadedfbca3189ab7a22a416aa6714"><code>7c9182f</code></a> update readme</li> <li><a href="https://github.com/actions/download-artifact/commit/b94e7015566b40b2de5eeeda514f239968da2dd7"><code>b94e701</code></a> licensed cache</li> <li><a href="https://github.com/actions/download-artifact/commit/0b55470e40ab7435f445813ebc18b1107ecf7e32"><code>0b55470</code></a> add test case for globbed downloads to same directory</li> <li><a href="https://github.com/actions/download-artifact/commit/0b51c2ef9042b581aded9711127e4a6d5f71c550"><code>0b51c2e</code></a> update prettier/eslint versions</li> <li><a href="https://github.com/actions/download-artifact/commit/c4c6db724f9510b2b3cff5ebcc417c87a2b2fa97"><code>c4c6db7</code></a> support globbing artifact list & merging download directory</li> <li><a href="https://github.com/actions/download-artifact/commit/1bd0606e08fcaa4c28afc1fc7d45830ab5482dac"><code>1bd0606</code></a> Merge pull request <a href="https://redirect.github.com/actions/download-artifact/issues/252">#252</a> from stchr/patch-1</li> <li><a href="https://github.com/actions/download-artifact/commit/eff4d42b1f6ff704c7a0f37152ed8793673560ef"><code>eff4d42</code></a> fix default for run-id</li> <li>Additional commits viewable in <a href="https://github.com/actions/download-artifact/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 02 January 2024, 15:42:25 UTC |
| 454f89c | dependabot[bot] | 02 January 2024, 09:29:09 UTC | Bump actions/setup-python from 4 to 5 (#7351) Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/setup-python/releases">actions/setup-python's releases</a>.</em></p> <blockquote> <h2>v5.0.0</h2> <h2>What's Changed</h2> <p>In scope of this release, we update node version runtime from node16 to node20 (<a href="https://redirect.github.com/actions/setup-python/pull/772">actions/setup-python#772</a>). Besides, we update dependencies to the latest versions.</p> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0">https://github.com/actions/setup-python/compare/v4.8.0...v5.0.0</a></p> <h2>v4.8.0</h2> <h2>What's Changed</h2> <p>In scope of this release we added support for GraalPy (<a href="https://redirect.github.com/actions/setup-python/pull/694">actions/setup-python#694</a>). You can use this snippet to set up GraalPy:</p> <pre lang="yaml"><code>steps: - uses: actions/checkout@v4 - uses: actions/setup-python@v4 with: python-version: 'graalpy-22.3' - run: python my_script.py </code></pre> <p>Besides, the release contains such changes as:</p> <ul> <li>Trim python version when reading from file by <a href="https://github.com/FerranPares"><code>@FerranPares</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/628">actions/setup-python#628</a></li> <li>Use non-deprecated versions in examples by <a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/724">actions/setup-python#724</a></li> <li>Change deprecation comment to past tense by <a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/723">actions/setup-python#723</a></li> <li>Bump <code>@babel/traverse</code> from 7.9.0 to 7.23.2 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/743">actions/setup-python#743</a></li> <li>advanced-usage.md: Encourage the use actions/checkout@v4 by <a href="https://github.com/cclauss"><code>@cclauss</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/729">actions/setup-python#729</a></li> <li>Examples now use checkout@v4 by <a href="https://github.com/simonw"><code>@simonw</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/738">actions/setup-python#738</a></li> <li>Update actions/checkout to v4 by <a href="https://github.com/dmitry-shibanov"><code>@dmitry-shibanov</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/761">actions/setup-python#761</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/FerranPares"><code>@FerranPares</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/628">actions/setup-python#628</a></li> <li><a href="https://github.com/timfel"><code>@timfel</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/694">actions/setup-python#694</a></li> <li><a href="https://github.com/jeffwidman"><code>@jeffwidman</code></a> made their first contribution in <a href="https://redirect.github.com/actions/setup-python/pull/724">actions/setup-python#724</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4...v4.8.0">https://github.com/actions/setup-python/compare/v4...v4.8.0</a></p> <h2>v4.7.1</h2> <h2>What's Changed</h2> <ul> <li>Bump word-wrap from 1.2.3 to 1.2.4 by <a href="https://github.com/dependabot"><code>@dependabot</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/702">actions/setup-python#702</a></li> <li>Add range validation for toml files by <a href="https://github.com/dmitry-shibanov"><code>@dmitry-shibanov</code></a> in <a href="https://redirect.github.com/actions/setup-python/pull/726">actions/setup-python#726</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/setup-python/compare/v4...v4.7.1">https://github.com/actions/setup-python/compare/v4...v4.7.1</a></p> <h2>v4.7.0</h2> <p>In scope of this release, the support for reading python version from pyproject.toml was added (<a href="https://redirect.github.com/actions/setup-python/pull/669">actions/setup-python#669</a>).</p> <pre lang="yaml"><code> - name: Setup Python uses: actions/setup-python@v4 </tr></table> </code></pre> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/setup-python/commit/0a5c61591373683505ea898e09a3ea4f39ef2b9c"><code>0a5c615</code></a> Update action to node20 (<a href="https://redirect.github.com/actions/setup-python/issues/772">#772</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/0ae58361cdfd39e2950bed97a1e26aa20c3d8955"><code>0ae5836</code></a> Add example of GraalPy to docs (<a href="https://redirect.github.com/actions/setup-python/issues/773">#773</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/b64ffcaf5b410884ad320a9cfac8866006a109aa"><code>b64ffca</code></a> update actions/checkout to v4 (<a href="https://redirect.github.com/actions/setup-python/issues/761">#761</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/8d2896179abf658742de432b3f203d2c2d86a587"><code>8d28961</code></a> Examples now use checkout@v4 (<a href="https://redirect.github.com/actions/setup-python/issues/738">#738</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/7bc6abb01e0555719edc2dbca70a2fde309e5e56"><code>7bc6abb</code></a> advanced-usage.md: Encourage the use actions/checkout@v4 (<a href="https://redirect.github.com/actions/setup-python/issues/729">#729</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/e8111cec9d3dc15220d8a3b638f08419f57b906a"><code>e8111ce</code></a> Bump <code>@babel/traverse</code> from 7.9.0 to 7.23.2 (<a href="https://redirect.github.com/actions/setup-python/issues/743">#743</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/a00ea43da65e7c04d2bdae58b3afecd77057eb9e"><code>a00ea43</code></a> add fix for graalpy ci (<a href="https://redirect.github.com/actions/setup-python/issues/741">#741</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/8635b1ccc5934e73ed3510980fd2e7790b85839b"><code>8635b1c</code></a> Change deprecation comment to past tense (<a href="https://redirect.github.com/actions/setup-python/issues/723">#723</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/f6cc428f535856f9c23558d01765a42a4d6cf758"><code>f6cc428</code></a> Use non-deprecated versions in examples (<a href="https://redirect.github.com/actions/setup-python/issues/724">#724</a>)</li> <li><a href="https://github.com/actions/setup-python/commit/5f2af211d616f86005883b44826180b21abb4060"><code>5f2af21</code></a> Add GraalPy support (<a href="https://redirect.github.com/actions/setup-python/issues/694">#694</a>)</li> <li>Additional commits viewable in <a href="https://github.com/actions/setup-python/compare/v4...v5">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 02 January 2024, 09:29:09 UTC |
| 38ac573 | dependabot[bot] | 02 January 2024, 06:42:41 UTC | Bump actions/upload-artifact from 3 to 4 (#7350) Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/upload-artifact/releases">actions/upload-artifact's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <p>The release of upload-artifact@v4 and download-artifact@v4 are major changes to the backend architecture of Artifacts. They have numerous performance and behavioral improvements.</p> <p>For more information, see the <a href="https://github.com/actions/toolkit/tree/main/packages/artifact"><code>@actions/artifact</code></a> documentation.</p> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/vmjoseph"><code>@vmjoseph</code></a> made their first contribution in <a href="https://redirect.github.com/actions/upload-artifact/pull/464">actions/upload-artifact#464</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/upload-artifact/compare/v3...v4.0.0">https://github.com/actions/upload-artifact/compare/v3...v4.0.0</a></p> <h2>v3.1.3</h2> <h2>What's Changed</h2> <ul> <li>chore(github): remove trailing whitespaces by <a href="https://github.com/ljmf00"><code>@ljmf00</code></a> in <a href="https://redirect.github.com/actions/upload-artifact/pull/313">actions/upload-artifact#313</a></li> <li>Bump <code>@actions/artifact</code> version to v1.1.2 by <a href="https://github.com/bethanyj28"><code>@bethanyj28</code></a> in <a href="https://redirect.github.com/actions/upload-artifact/pull/436">actions/upload-artifact#436</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/upload-artifact/compare/v3...v3.1.3">https://github.com/actions/upload-artifact/compare/v3...v3.1.3</a></p> <h2>v3.1.2</h2> <ul> <li>Update all <code>@actions/*</code> NPM packages to their latest versions- <a href="https://redirect.github.com/actions/upload-artifact/issues/374">#374</a></li> <li>Update all dev dependencies to their most recent versions - <a href="https://redirect.github.com/actions/upload-artifact/issues/375">#375</a></li> </ul> <h2>v3.1.1</h2> <ul> <li>Update actions/core package to latest version to remove <code>set-output</code> deprecation warning <a href="https://redirect.github.com/actions/upload-artifact/issues/351">#351</a></li> </ul> <h2>v3.1.0</h2> <h2>What's Changed</h2> <ul> <li>Bump <code>@actions/artifact</code> to v1.1.0 (<a href="https://redirect.github.com/actions/upload-artifact/pull/327">actions/upload-artifact#327</a>) <ul> <li>Adds checksum headers on artifact upload (<a href="https://redirect.github.com/actions/toolkit/pull/1095">actions/toolkit#1095</a>) (<a href="https://redirect.github.com/actions/toolkit/pull/1063">actions/toolkit#1063</a>)</li> </ul> </li> </ul> </blockquote> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/upload-artifact/commit/c7d193f32edcb7bfad88892161225aeda64e9392"><code>c7d193f</code></a> Merge pull request <a href="https://redirect.github.com/actions/upload-artifact/issues/466">#466</a> from actions/v4-beta</li> <li><a href="https://github.com/actions/upload-artifact/commit/13131bb095770b4070a7477c3cd2d96e1c16d9f4"><code>13131bb</code></a> licensed cache</li> <li><a href="https://github.com/actions/upload-artifact/commit/4a6c273b9834f66a1d05c170dc3f80f9cdb9def1"><code>4a6c273</code></a> Merge branch 'main' into v4-beta</li> <li><a href="https://github.com/actions/upload-artifact/commit/f391bb91a3d3118aeca171c365bb319ece276b37"><code>f391bb9</code></a> Merge pull request <a href="https://redirect.github.com/actions/upload-artifact/issues/465">#465</a> from actions/robherley/v4-documentation</li> <li><a href="https://github.com/actions/upload-artifact/commit/9653d03c4b74c32144e02dae644fea70e079d4b3"><code>9653d03</code></a> Apply suggestions from code review</li> <li><a href="https://github.com/actions/upload-artifact/commit/875b63076402f25ef9d52c294c86ba4f97810575"><code>875b630</code></a> add limitations section</li> <li><a href="https://github.com/actions/upload-artifact/commit/ecb21463e93740a6be75c3116242169bfdbcb15a"><code>ecb2146</code></a> add compression example</li> <li><a href="https://github.com/actions/upload-artifact/commit/5e7604f84a055838f64ed68bb9904751523081ae"><code>5e7604f</code></a> trim some repeated info</li> <li><a href="https://github.com/actions/upload-artifact/commit/d6437d07581fe318a364512e6cf6b1dca6b4f92c"><code>d6437d0</code></a> naming</li> <li><a href="https://github.com/actions/upload-artifact/commit/1b561557037b4957d7d184e9aac02bec86c771eb"><code>1b56155</code></a> s/v4-beta/v4/g</li> <li>Additional commits viewable in <a href="https://github.com/actions/upload-artifact/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 02 January 2024, 06:42:41 UTC |
| 02973f0 | dependabot[bot] | 02 January 2024, 03:34:50 UTC | Bump github/codeql-action from 2 to 3 (#7354) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/github/codeql-action/releases">github/codeql-action's releases</a>.</em></p> <blockquote> <h2>CodeQL Bundle v2.15.5</h2> <p>Bundles CodeQL CLI v2.15.5</p> <ul> <li>(<a href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.5">release</a>)</li> </ul> <p>Includes the following CodeQL language packs from <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5"><code>github/codeql@codeql-cli/v2.15.5</code></a>:</p> <ul> <li><code>codeql/cpp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/src">source</a>)</li> <li><code>codeql/cpp-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/cpp/ql/lib">source</a>)</li> <li><code>codeql/csharp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/csharp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/csharp/ql/src">source</a>)</li> <li><code>codeql/csharp-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/csharp/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/csharp/ql/lib">source</a>)</li> <li><code>codeql/go-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/go/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/go/ql/src">source</a>)</li> <li><code>codeql/go-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/go/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/go/ql/lib">source</a>)</li> <li><code>codeql/java-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/java/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/java/ql/src">source</a>)</li> <li><code>codeql/java-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/java/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/java/ql/lib">source</a>)</li> <li><code>codeql/javascript-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/javascript/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/javascript/ql/src">source</a>)</li> <li><code>codeql/javascript-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/javascript/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/javascript/ql/lib">source</a>)</li> <li><code>codeql/python-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/python/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/python/ql/src">source</a>)</li> <li><code>codeql/python-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/python/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/python/ql/lib">source</a>)</li> <li><code>codeql/ruby-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/src">source</a>)</li> <li><code>codeql/ruby-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/ruby/ql/lib">source</a>)</li> <li><code>codeql/swift-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/src">source</a>)</li> <li><code>codeql/swift-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.5/swift/ql/lib">source</a>)</li> </ul> <h2>CodeQL Bundle v2.15.4</h2> <p>Bundles CodeQL CLI v2.15.4</p> <ul> <li>(<a href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.4">release</a>)</li> </ul> <p>Includes the following CodeQL language packs from <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4"><code>github/codeql@codeql-cli/v2.15.4</code></a>:</p> <ul> <li><code>codeql/cpp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/src">source</a>)</li> <li><code>codeql/cpp-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/cpp/ql/lib">source</a>)</li> <li><code>codeql/csharp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/csharp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/csharp/ql/src">source</a>)</li> 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href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/java/ql/lib">source</a>)</li> <li><code>codeql/javascript-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/src">source</a>)</li> <li><code>codeql/javascript-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/javascript/ql/lib">source</a>)</li> <li><code>codeql/python-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/python/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/python/ql/src">source</a>)</li> <li><code>codeql/python-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/python/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/python/ql/lib">source</a>)</li> <li><code>codeql/ruby-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/ruby/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/ruby/ql/src">source</a>)</li> <li><code>codeql/ruby-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/ruby/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/ruby/ql/lib">source</a>)</li> <li><code>codeql/swift-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/swift/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/swift/ql/src">source</a>)</li> <li><code>codeql/swift-all</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/swift/ql/lib/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.4/swift/ql/lib">source</a>)</li> </ul> <h2>CodeQL Bundle</h2> <p>Bundles CodeQL CLI v2.15.3</p> <ul> <li>(<a href="https://github.com/github/codeql-cli-binaries/blob/HEAD/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql-cli-binaries/releases/tag/v2.15.3">release</a>)</li> </ul> <p>Includes the following CodeQL language packs from <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3"><code>github/codeql@codeql-cli/v2.15.3</code></a>:</p> <ul> <li><code>codeql/cpp-queries</code> (<a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3/cpp/ql/src/CHANGELOG.md">changelog</a>, <a href="https://github.com/github/codeql/tree/codeql-cli/v2.15.3/cpp/ql/src">source</a>)</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/github/codeql-action/blob/main/CHANGELOG.md">github/codeql-action's changelog</a>.</em></p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/github/codeql-action/commit/e0c2b0a8a0cf7360f5f17b1ee83b98565e81cbaf"><code>e0c2b0a</code></a> change version numbers inside processing function as well</li> <li><a href="https://github.com/github/codeql-action/commit/8e4a6c7a903526fda317aa47e226cbd5a4f1d358"><code>8e4a6c7</code></a> improve handling of changelog processing for backports</li> <li><a href="https://github.com/github/codeql-action/commit/511f073971a2ce589ceea100a90831c5ca4310bb"><code>511f073</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2033">#2033</a> from github/dependabot/npm_and_yarn/npm-0a98872b3d</li> <li><a href="https://github.com/github/codeql-action/commit/ebf5a837135e243d2654e281549af1ee7dc107aa"><code>ebf5a83</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2035">#2035</a> from github/mergeback/v3.22.11-to-main-b374143c</li> <li><a href="https://github.com/github/codeql-action/commit/7813bda958fdd91160a45ff6cdb3a723b381c8c6"><code>7813bda</code></a> Update checked-in dependencies</li> <li><a href="https://github.com/github/codeql-action/commit/2b2fb6b1dc9a83da2dd429ce0c83af9380973083"><code>2b2fb6b</code></a> Update changelog and version after v3.22.11</li> <li><a href="https://github.com/github/codeql-action/commit/b374143c1149a9115d881581d29b8390bbcbb59c"><code>b374143</code></a> Merge pull request <a href="https://redirect.github.com/github/codeql-action/issues/2034">#2034</a> from github/update-v3.22.11-64e61baea</li> <li><a href="https://github.com/github/codeql-action/commit/95591babe868195080e3ca2c641042066f097f3d"><code>95591ba</code></a> Merge branch 'main' into dependabot/npm_and_yarn/npm-0a98872b3d</li> <li><a href="https://github.com/github/codeql-action/commit/e2b5cc75ce46a4a33dbafa57e19019d6bd5a67be"><code>e2b5cc7</code></a> Update changelog for v3.22.11</li> <li>See full diff in <a href="https://github.com/github/codeql-action/compare/v2...v3">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 02 January 2024, 03:34:50 UTC |
| b3d7a48 | YunLiu | 29 December 2023, 04:33:46 UTC | Upgrade the version of `transformers` (#7343) Fixes #7338 ### Description transformers' version is pinned to v4.22 since https://github.com/Project-MONAI/MONAI/issues/5157. Updated the version refer to https://github.com/huggingface/transformers/issues/21678. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 29 December 2023, 04:33:46 UTC |
| f5327ad | YunLiu | 28 December 2023, 14:22:52 UTC | Update openslide-python version (#7344) | 28 December 2023, 14:22:52 UTC |
| 90d2acb | YunLiu | 18 December 2023, 04:00:43 UTC | Fix `lazy` ignored in `SpatialPadd` (#7316) Fixes #7314 #7315. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Ben Murray <ben.murray@gmail.com> | 18 December 2023, 04:00:43 UTC |
| 01a0ee1 | binliunls | 15 December 2023, 14:00:24 UTC | fix optimizer pararmeter issue (#7322) Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: binliu <binliu@nvidia.com> | 15 December 2023, 14:00:24 UTC |
| 4c546b3 | YunLiu | 15 December 2023, 03:32:18 UTC | Fix typo (#7321) Fix typo. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 15 December 2023, 03:32:18 UTC |
| 6126a6e | YunLiu | 14 December 2023, 02:14:19 UTC | Support specified filenames in `Saveimage` (#7318) Fixes #7317 ### Description Add support specified filename for users to save like nibabel.save. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 14 December 2023, 02:14:19 UTC |
| b1c8b42 | YunLiu | 12 December 2023, 03:07:04 UTC | Fix `RuntimeError` in `DataAnalyzer` (#7310) Fixes #7309 ### Description `DataAnalyzer` only catch error when data is on GPU, add catching error when data is on CPU. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 12 December 2023, 03:07:04 UTC |
| 8212458 | Yufan He | 08 December 2023, 02:36:21 UTC | Fix swinunetrv2 2D bug (#7302) Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: heyufan1995 <heyufan1995@gmail.com> | 08 December 2023, 02:36:21 UTC |
| d5585c3 | Kaibo Tang | 05 December 2023, 08:46:24 UTC | 7263 add diffusion loss (#7272) Fixes #7263. ### Description Add diffusion loss. I also made a [demo notebook](https://github.com/kvttt/deep-atlas/blob/main/diffusion_loss_scale_test.ipynb) to provide some explanations and analyses of diffusion loss. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: kaibo <ktang@unc.edu> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 05 December 2023, 08:46:24 UTC |
| 88f8dd2 | YunLiu | 05 December 2023, 05:20:01 UTC | update the Python version requirements for transformers (#7275) Part of #7250. ### Description Fix the Python version for transformers smaller than 3.10. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 05 December 2023, 05:20:01 UTC |
| 2fc0126 | YunLiu | 04 December 2023, 03:50:01 UTC | wholeBody_ct_segmentation failed to be download (#7280) Fixes model-zoo#537 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: KumoLiu <yunl@nvidia.com> | 04 December 2023, 03:50:01 UTC |
| 962aa3c | dependabot[bot] | 01 December 2023, 08:30:30 UTC | Bump conda-incubator/setup-miniconda from 2 to 3 (#7274) Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2 to 3. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/conda-incubator/setup-miniconda/releases">conda-incubator/setup-miniconda's releases</a>.</em></p> <blockquote> <h2>Version 3.0.0</h2> <h3>Features</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/308">#308</a> Update to node20</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/291">#291</a> Add conda-solver option (defaults to libmamba)</li> </ul> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a> Fix condaBasePath when useBundled is false, and there's no pre-existing conda</li> </ul> <h3>Documentation</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/309">#309</a> Switch to main branch based development</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/313">#313</a> Specify team conda-incubator/setup-miniconda as codeowners</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a> README: update actions in examples, add security section, similar actions</li> </ul> <h3>Tasks and Maintenance</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/307">#307</a> Run dependabot against main branch and also update node packages</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/311">#311</a> Bump actions/checkout from 2 to 4</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/310">#310</a> Bump actions/cache from 1 to 3</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/314">#314</a> Strip/update dependencies</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/315">#315</a> Split lint into check and build, switch from <code>npm install</code> to <code>npm ci</code></li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/317">#317</a> Bump normalize-url from 4.5.1 to 8.0.0</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/316">#316</a> Faster workflow response / saving resources via timeout/concurrency policy</li> </ul> <p><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/308">#308</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/308">conda-incubator/setup-miniconda#308</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/291">#291</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/291">conda-incubator/setup-miniconda#291</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/299">conda-incubator/setup-miniconda#299</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/309">#309</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/309">conda-incubator/setup-miniconda#309</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/313">#313</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/313">conda-incubator/setup-miniconda#313</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/318">conda-incubator/setup-miniconda#318</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/307">#307</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/307">conda-incubator/setup-miniconda#307</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/311">#311</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/311">conda-incubator/setup-miniconda#311</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/310">#310</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/310">conda-incubator/setup-miniconda#310</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/314">#314</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/314">conda-incubator/setup-miniconda#314</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/315">#315</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/315">conda-incubator/setup-miniconda#315</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/317">#317</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/317">conda-incubator/setup-miniconda#317</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/316">#316</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/316">conda-incubator/setup-miniconda#316</a></p> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/isuruf"><code>@isuruf</code></a> made their first contribution in <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/299">conda-incubator/setup-miniconda#299</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/conda-incubator/setup-miniconda/compare/v2...v3.0.0">https://github.com/conda-incubator/setup-miniconda/compare/v2...v3.0.0</a></p> <h2>Version 2.3.0</h2> <h3>Documentation</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/263">#263</a> Update links to GitHub shell docs</li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md">conda-incubator/setup-miniconda's changelog</a>.</em></p> <blockquote> <h2><a href="https://github.com/conda-incubator/setup-miniconda/releases/tag/v3.0.1">v3.0.1</a> (2023-11-29)</h2> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/325">#325</a> Fix environment activation on windows (a v3 regression) due to hard-coded install PATH</li> </ul> <p><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/325">#325</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/325">conda-incubator/setup-miniconda#325</a></p> <h2><a href="https://github.com/conda-incubator/setup-miniconda/releases/tag/v3.0.0">v3.0.0</a> (2023-11-27)</h2> <h3>Features</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/308">#308</a> Update to node20</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/291">#291</a> Add conda-solver option (defaults to libmamba)</li> </ul> <h3>Fixes</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a> Fix condaBasePath when useBundled is false, and there's no pre-existing conda</li> </ul> <h3>Documentation</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/309">#309</a> Switch to main branch based development</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/313">#313</a> Specify team conda-incubator/setup-miniconda as codeowners</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a> README: update actions in examples, add security section, similar actions</li> </ul> <h3>Tasks and Maintenance</h3> <ul> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/307">#307</a> Run dependabot against main branch and also update node packages</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/311">#311</a> Bump actions/checkout from 2 to 4</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/310">#310</a> Bump actions/cache from 1 to 3</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/314">#314</a> Strip/update dependencies</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/315">#315</a> Split lint into check and build, switch from <code>npm install</code> to <code>npm ci</code></li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/317">#317</a> Bump normalize-url from 4.5.1 to 8.0.0</li> <li><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/316">#316</a> Faster workflow response / saving resources via timeout/concurrency policy</li> </ul> <p><a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/308">#308</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/308">conda-incubator/setup-miniconda#308</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/291">#291</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/291">conda-incubator/setup-miniconda#291</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/299">conda-incubator/setup-miniconda#299</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/309">#309</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/309">conda-incubator/setup-miniconda#309</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/313">#313</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/313">conda-incubator/setup-miniconda#313</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/318">conda-incubator/setup-miniconda#318</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/307">#307</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/307">conda-incubator/setup-miniconda#307</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/311">#311</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/311">conda-incubator/setup-miniconda#311</a> <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/310">#310</a>: <a href="https://redirect.github.com/conda-incubator/setup-miniconda/pull/310">conda-incubator/setup-miniconda#310</a></p> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/11b562958363ec5770fef326fe8ef0366f8cbf8a"><code>11b5629</code></a> Prepare 3.0.1 (<a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/326">#326</a>)</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/8706aa744e0162a2264dc938c759d2b51f9b5e10"><code>8706aa7</code></a> Fix env activation on win (a v3 regression) due to hard-coded install PATH (#...</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/c585a970973750f68d4d5c75284051b3f0167afe"><code>c585a97</code></a> Bump conda-incubator/setup-miniconda from 2.3.0 to 3.0.0 (<a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/321">#321</a>)</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/2defc80cc6f4028b1780c50faf08dd505d698976"><code>2defc80</code></a> Prepare release (<a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/320">#320</a>)</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/0d5a56b9eb002ebca917fd24dbbb168694a769e3"><code>0d5a56b</code></a> Bump actions/checkout from 2 to 4 (<a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/319">#319</a>)</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/45fd3f90899ca98b9fe9ed48921c9edbb341a570"><code>45fd3f9</code></a> Merge pull request <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/316">#316</a> from dbast/timeout</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/d1e04fc2677b38349d15832651d5d3c485c8411a"><code>d1e04fc</code></a> Merge pull request <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/299">#299</a> from isuruf/condaBasePath</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/fab00738406b3d3854b3b57791e274f16ac95ab4"><code>fab0073</code></a> Merge pull request <a href="https://redirect.github.com/conda-incubator/setup-miniconda/issues/318">#318</a> from dbast/readme</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/fa6bdf964307f648fedc0f07787e550f08eb2812"><code>fa6bdf9</code></a> Update with npm run build</li> <li><a href="https://github.com/conda-incubator/setup-miniconda/commit/d42f8b884a951a7e5af53888bd6101e0fd1dc916"><code>d42f8b8</code></a> Fix condaBasePath when useBundled is false, and there's no pre-existing conda</li> <li>Additional commits viewable in <a href="https://github.com/conda-incubator/setup-miniconda/compare/v2...v3">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 01 December 2023, 08:30:30 UTC |
| ac6bd5d | YunLiu | 30 November 2023, 12:10:45 UTC | Skip Old Pytorch Versions for `SwinUNETR` (#7266) Fixes #7265. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 30 November 2023, 12:10:45 UTC |
| cf3048e | ytl0623 | 30 November 2023, 04:24:11 UTC | add SoftclDiceLoss and SoftDiceclDiceLoss loss function in documentation (#7271) Fixes #7193 ### Description add SoftclDiceLoss and SoftDiceclDiceLoss loss function in documentation(https://github.com/Project-MONAI/MONAI/blob/dev/docs/source/losses.rst?plain=1) ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: ytl0623 <david89062388@gmail.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 30 November 2023, 04:24:11 UTC |
| a501252 | ytl0623 | 30 November 2023, 02:40:00 UTC | Quote $PY_EXE variable to deal with Python path that contain spaces in Bash (#7268) Fixes #5857. ### Description When dealing with paths that contain spaces in Bash, it's important to properly quote the variables to ensure that spaces are handled correctly. So, maybe we can replace all `$PY_EXE` variables to `"$PY_EXE"` in the `runtests.sh` file. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: ytl0623 <david89062388@gmail.com> | 30 November 2023, 02:40:00 UTC |
| 860b7c3 | YunLiu | 27 November 2023, 16:18:51 UTC | Fix B026 unrecommanded star-arg unpacking after a keyword argument (#7262) Fixes #7261 ### Description Remove star-arg unpacking before a keyword argument. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: KumoLiu <yunl@nvidia.com> | 27 November 2023, 16:18:51 UTC |
| 8e134b8 | elitap | 22 November 2023, 05:06:17 UTC | add class label option to write metric report to improve readability … (#7249) add class label option to write metric report to improve readability, without that option in case of many classes the resulting report is very hard to interpret. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). --------- Signed-off-by: elitap <elias.tappeiner@gmx.at> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> | 22 November 2023, 05:06:17 UTC |
| c300b36 | monai-bot | 20 November 2023, 08:34:18 UTC | auto updates (#7247) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 20 November 2023, 08:34:18 UTC |
| 24cafad | Ishan Dutta | 20 November 2023, 02:32:39 UTC | :hammer: [dataset] Handle corrupted cached file in PersistentDataset (#7244) Fixes #5723 ### Description Corrupted cached files in the PersistentDataset cause the exception: `RuntimeError: Invalid magic number; corrupt file?` With this PR we handle that case in the try-except block and continue the usual functionality if the cached file was absent. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Ishan Dutta <ishandutta0098@gmail.com> Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> | 20 November 2023, 02:32:39 UTC |
| 882482b | Ishan Dutta | 19 November 2023, 16:19:16 UTC | :memo: [array] Add examples for EnsureType and CastToType (#7245) Fixes #7101 ### Description Added examples in the docstrings for `EnsureType` and `CastToType` transforms which show how they function under different circumstances. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: Ishan Dutta <ishandutta0098@gmail.com> | 19 November 2023, 16:19:16 UTC |
| dfe0b40 | YunLiu | 17 November 2023, 14:14:17 UTC | Add cache option in `GridPatchDataset` (#7180) Part of #6904 ### Description - Fix inefficient patching in `PatchDataset` - Add cache option in `GridPatchDataset` ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> | 17 November 2023, 14:14:17 UTC |
| a3064eb | Dženan Zukić | 17 November 2023, 09:56:52 UTC | Update bug_report.md (#7213) Avoid syntax error on Windows ### Description ```log (.venv) C:\Dev\Kitware\python>python -c 'import monai; monai.config.print_debug_info()' File "<string>", line 1 'import ^ SyntaxError: unterminated string literal (detected at line 1) ``` ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: Dženan Zukić <dzenan.zukic@kitware.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> | 17 November 2023, 09:56:52 UTC |
| 580d06c | ytl0623 | 17 November 2023, 08:18:07 UTC | Replace single quotation marks with double quotation marks to install… (#7234) … MONAI with all dependencies on Windows Fixes #6118 ### Description The Windows shell doesn't recognize single quotes to delimit a string at all, so on Windows you'll need to use double quotes. It's the same command no matter which type of quotes you use; after the shell does its processing, the argument is passed to pip with the quotation marks already removed. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: ytl0623 <david89062388@gmail.com> | 17 November 2023, 08:18:07 UTC |
| 915d773 | YanxuanLiu | 17 November 2023, 03:21:56 UTC | add Yun Liu to user list to trigger blossom-ci [skip ci] (#7239) Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Add new developer to blossom-ci trigger list Signed-off-by: YanxuanLiu <yanxuanl@nvidia.com> | 17 November 2023, 03:21:56 UTC |
| 755128b | Felix Schnabel | 16 November 2023, 18:49:14 UTC | Fixup mypy 1.7.0 errors (#7231) Fixes #7230. ### Description Fix the typing issues and the deprecation. Also always run type checking with Linux environment, since ForkServerContext is not available on Windows. ### Types of changes - [x] Non-breaking change (fix or new feature that would not break existing functionality). --------- Signed-off-by: Felix Schnabel <f.schnabel@tum.de> | 16 November 2023, 18:49:14 UTC |
| 4b3762b | elitap | 15 November 2023, 11:00:21 UTC | fix useless error msg in nnunetv2runner (#7217) Fixes # fix useless error msg in nnunetv2runner ### Description ### Types of changes - [x] Non-breaking change (fix or new feature that would not break existing functionality). Signed-off-by: elitap <elias.tappeiner@gmx.at> | 15 November 2023, 11:00:21 UTC |
| 782c1e6 | monai-bot | 06 November 2023, 08:57:08 UTC | auto updates (#7203) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 06 November 2023, 08:57:08 UTC |
| fbbb64b | Kaibo Tang | 03 November 2023, 11:25:54 UTC | Implemented VoxelMorph (#7178) Fixes #5484. ### Description Implemented VoxelMorph and added some docstrings. Checked coding style locally. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: kaibo <ktang@unc.edu> | 03 November 2023, 11:25:54 UTC |
| 4847df2 | myron | 03 November 2023, 09:54:04 UTC | autorunner params from config (#7175) allows setting AutoRunner params from config allows specifying number of folds in config --------- Signed-off-by: myron <amyronenko@nvidia.com> | 03 November 2023, 09:54:04 UTC |
| 2658b00 | YunLiu | 02 November 2023, 16:25:03 UTC | Precision issue in `get_confusion_matrix ` (#7187) Fixes #7186 ### Description remove unnecessary float() ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> Co-authored-by: Wenqi Li <831580+wyli@users.noreply.github.com> | 02 November 2023, 16:25:03 UTC |
| d42440b | Wenqi Li | 02 November 2023, 15:08:22 UTC | 6627 reading dcm folder filtering filenames (#7181) Fixes #6627 ### Description adding a `fname_regex` option to the pydicom reader ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 02 November 2023, 15:08:22 UTC |
| c3f9914 | Dong Yang | 02 November 2023, 09:55:38 UTC | [Auto3DSeg] Add mlflow support in autorunner. (#7176) Add MLflow support in AutoRunner Class. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: dongy <dongy@nvidia.com> | 02 November 2023, 09:55:38 UTC |
| cf886e7 | Wenqi Li | 01 November 2023, 16:06:00 UTC | 5394 enable py311 tests (#7182) Fixes https://github.com/Project-MONAI/MONAI/issues/5394 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 01 November 2023, 16:06:00 UTC |
| 3239db8 | dependabot[bot] | 01 November 2023, 08:12:05 UTC | Bump actions/checkout from 3 to 4 (#7179) Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/actions/checkout/releases">actions/checkout's releases</a>.</em></p> <blockquote> <h2>v4.0.0</h2> <h2>What's Changed</h2> <ul> <li>Update default runtime to node20 by <a href="https://github.com/takost"><code>@takost</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1436">actions/checkout#1436</a></li> <li>Support fetching without the --progress option by <a href="https://github.com/simonbaird"><code>@simonbaird</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1067">actions/checkout#1067</a></li> <li>Release 4.0.0 by <a href="https://github.com/takost"><code>@takost</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1447">actions/checkout#1447</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/takost"><code>@takost</code></a> made their first contribution in <a href="https://redirect.github.com/actions/checkout/pull/1436">actions/checkout#1436</a></li> <li><a href="https://github.com/simonbaird"><code>@simonbaird</code></a> made their first contribution in <a href="https://redirect.github.com/actions/checkout/pull/1067">actions/checkout#1067</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/checkout/compare/v3...v4.0.0">https://github.com/actions/checkout/compare/v3...v4.0.0</a></p> <h2>v3.6.0</h2> <h2>What's Changed</h2> <ul> <li>Mark test scripts with Bash'isms to be run via Bash by <a href="https://github.com/dscho"><code>@dscho</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1377">actions/checkout#1377</a></li> <li>Add option to fetch tags even if fetch-depth > 0 by <a href="https://github.com/RobertWieczoreck"><code>@RobertWieczoreck</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/579">actions/checkout#579</a></li> <li>Release 3.6.0 by <a href="https://github.com/luketomlinson"><code>@luketomlinson</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1437">actions/checkout#1437</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/RobertWieczoreck"><code>@RobertWieczoreck</code></a> made their first contribution in <a href="https://redirect.github.com/actions/checkout/pull/579">actions/checkout#579</a></li> <li><a href="https://github.com/luketomlinson"><code>@luketomlinson</code></a> made their first contribution in <a href="https://redirect.github.com/actions/checkout/pull/1437">actions/checkout#1437</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/checkout/compare/v3.5.3...v3.6.0">https://github.com/actions/checkout/compare/v3.5.3...v3.6.0</a></p> <h2>v3.5.3</h2> <h2>What's Changed</h2> <ul> <li>Fix: Checkout Issue in self hosted runner due to faulty submodule check-ins by <a href="https://github.com/megamanics"><code>@megamanics</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1196">actions/checkout#1196</a></li> <li>Fix typos found by codespell by <a href="https://github.com/DimitriPapadopoulos"><code>@DimitriPapadopoulos</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1287">actions/checkout#1287</a></li> <li>Add support for sparse checkouts by <a href="https://github.com/dscho"><code>@dscho</code></a> and <a href="https://github.com/dfdez"><code>@dfdez</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1369">actions/checkout#1369</a></li> <li>Release v3.5.3 by <a href="https://github.com/TingluoHuang"><code>@TingluoHuang</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1376">actions/checkout#1376</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/megamanics"><code>@megamanics</code></a> made their first contribution in <a href="https://redirect.github.com/actions/checkout/pull/1196">actions/checkout#1196</a></li> <li><a href="https://github.com/DimitriPapadopoulos"><code>@DimitriPapadopoulos</code></a> made their first contribution in <a href="https://redirect.github.com/actions/checkout/pull/1287">actions/checkout#1287</a></li> <li><a href="https://github.com/dfdez"><code>@dfdez</code></a> made their first contribution in <a href="https://redirect.github.com/actions/checkout/pull/1369">actions/checkout#1369</a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/checkout/compare/v3...v3.5.3">https://github.com/actions/checkout/compare/v3...v3.5.3</a></p> <h2>v3.5.2</h2> <h2>What's Changed</h2> <ul> <li>Fix: Use correct API url / endpoint in GHES by <a href="https://github.com/fhammerl"><code>@fhammerl</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1289">actions/checkout#1289</a> based on <a href="https://redirect.github.com/actions/checkout/issues/1286">#1286</a> by <a href="https://github.com/1newsr"><code>@1newsr</code></a></li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/actions/checkout/compare/v3.5.1...v3.5.2">https://github.com/actions/checkout/compare/v3.5.1...v3.5.2</a></p> <h2>v3.5.1</h2> <h2>What's Changed</h2> <ul> <li>Improve checkout performance on Windows runners by upgrading <code>@actions/github</code> dependency by <a href="https://github.com/BrettDong"><code>@BrettDong</code></a> in <a href="https://redirect.github.com/actions/checkout/pull/1246">actions/checkout#1246</a></li> </ul> <h2>New Contributors</h2> <ul> <li><a href="https://github.com/BrettDong"><code>@BrettDong</code></a> made their first contribution in <a href="https://redirect.github.com/actions/checkout/pull/1246">actions/checkout#1246</a></li> </ul> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Changelog</summary> <p><em>Sourced from <a href="https://github.com/actions/checkout/blob/main/CHANGELOG.md">actions/checkout's changelog</a>.</em></p> <blockquote> <h1>Changelog</h1> <h2>v4.1.0</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1396">Add support for partial checkout filters</a></li> </ul> <h2>v4.0.0</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1067">Support fetching without the --progress option</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1436">Update to node20</a></li> </ul> <h2>v3.6.0</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1377">Fix: Mark test scripts with Bash'isms to be run via Bash</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/579">Add option to fetch tags even if fetch-depth > 0</a></li> </ul> <h2>v3.5.3</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1196">Fix: Checkout fail in self-hosted runners when faulty submodule are checked-in</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1287">Fix typos found by codespell</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1369">Add support for sparse checkouts</a></li> </ul> <h2>v3.5.2</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1289">Fix api endpoint for GHES</a></li> </ul> <h2>v3.5.1</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1246">Fix slow checkout on Windows</a></li> </ul> <h2>v3.5.0</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1237">Add new public key for known_hosts</a></li> </ul> <h2>v3.4.0</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1209">Upgrade codeql actions to v2</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1210">Upgrade dependencies</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1225">Upgrade <code>@actions/io</code></a></li> </ul> <h2>v3.3.0</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/1045">Implement branch list using callbacks from exec function</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1050">Add in explicit reference to private checkout options</a></li> <li>[Fix comment typos (that got added in <a href="https://redirect.github.com/actions/checkout/issues/770">#770</a>)](<a href="https://redirect.github.com/actions/checkout/pull/1057">actions/checkout#1057</a>)</li> </ul> <h2>v3.2.0</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/942">Add GitHub Action to perform release</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/967">Fix status badge</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1002">Replace datadog/squid with ubuntu/squid Docker image</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/964">Wrap pipeline commands for submoduleForeach in quotes</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1029">Update <code>@actions/io</code> to 1.1.2</a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/1039">Upgrading version to 3.2.0</a></li> </ul> <h2>v3.1.0</h2> <ul> <li><a href="https://redirect.github.com/actions/checkout/pull/939">Use <code>@actions/core</code> <code>saveState</code> and <code>getState</code></a></li> <li><a href="https://redirect.github.com/actions/checkout/pull/922">Add <code>github-server-url</code> input</a></li> </ul> <h2>v3.0.2</h2> <!-- raw HTML omitted --> </blockquote> <p>... (truncated)</p> </details> <details> <summary>Commits</summary> <ul> <li><a href="https://github.com/actions/checkout/commit/b4ffde65f46336ab88eb53be808477a3936bae11"><code>b4ffde6</code></a> Link to release page from what's new section (<a href="https://redirect.github.com/actions/checkout/issues/1514">#1514</a>)</li> <li><a href="https://github.com/actions/checkout/commit/8530928916aaef40f59e6f221989ccb31f5759e7"><code>8530928</code></a> Correct link to GitHub Docs (<a href="https://redirect.github.com/actions/checkout/issues/1511">#1511</a>)</li> <li><a href="https://github.com/actions/checkout/commit/7cdaf2fbc075e6f3b9ca94cfd6cec5adc8a75622"><code>7cdaf2f</code></a> Update CODEOWNERS to Launch team (<a href="https://redirect.github.com/actions/checkout/issues/1510">#1510</a>)</li> <li><a href="https://github.com/actions/checkout/commit/8ade135a41bc03ea155e62e844d188df1ea18608"><code>8ade135</code></a> Prepare 4.1.0 release (<a href="https://redirect.github.com/actions/checkout/issues/1496">#1496</a>)</li> <li><a href="https://github.com/actions/checkout/commit/c533a0a4cfc4962971818edcfac47a2899e69799"><code>c533a0a</code></a> Add support for partial checkout filters (<a href="https://redirect.github.com/actions/checkout/issues/1396">#1396</a>)</li> <li><a href="https://github.com/actions/checkout/commit/72f2cec99f417b1a1c5e2e88945068983b7965f9"><code>72f2cec</code></a> Update README.md for V4 (<a href="https://redirect.github.com/actions/checkout/issues/1452">#1452</a>)</li> <li><a href="https://github.com/actions/checkout/commit/3df4ab11eba7bda6032a0b82a6bb43b11571feac"><code>3df4ab1</code></a> Release 4.0.0 (<a href="https://redirect.github.com/actions/checkout/issues/1447">#1447</a>)</li> <li><a href="https://github.com/actions/checkout/commit/8b5e8b768746b50394015010d25e690bfab9dfbc"><code>8b5e8b7</code></a> Support fetching without the --progress option (<a href="https://redirect.github.com/actions/checkout/issues/1067">#1067</a>)</li> <li><a href="https://github.com/actions/checkout/commit/97a652b80035363df47baee5031ec8670b8878ac"><code>97a652b</code></a> Update default runtime to node20 (<a href="https://redirect.github.com/actions/checkout/issues/1436">#1436</a>)</li> <li>See full diff in <a href="https://github.com/actions/checkout/compare/v3...v4">compare view</a></li> </ul> </details> <br /> [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting `@dependabot rebase`. [//]: # (dependabot-automerge-start) [//]: # (dependabot-automerge-end) --- <details> <summary>Dependabot commands and options</summary> <br /> You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show <dependency name> ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself) </details> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 01 November 2023, 08:12:05 UTC |
| 83f5091 | Mark Graham | 30 October 2023, 17:49:36 UTC | Port MONAI Generative utils (#7134) Towards completing #6676 . ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Mark Graham <markgraham539@gmail.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> | 30 October 2023, 17:49:36 UTC |
| 1c17f0e | Dr. Behrooz Hashemian | 30 October 2023, 13:21:53 UTC | Enable Chaining in Auto3DSeg CLI (#7168) Fixes #7167 ### Description Make all the setting methods in `AutoRunner` to return `self` to enable chaining in cli. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). --------- Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 30 October 2023, 13:21:53 UTC |
| 798570c | monai-bot | 30 October 2023, 09:41:25 UTC | auto updates (#7173) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 30 October 2023, 09:41:25 UTC |
| ccd32ca | Mark Graham | 27 October 2023, 16:24:34 UTC | [WIP] 7145 common factory class (#7159) Fixes https://github.com/Project-MONAI/MONAI/issues/7145 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Mark Graham <markgraham539@gmail.com> | 27 October 2023, 16:24:34 UTC |
| 487f98b | Eric Kerfoot | 27 October 2023, 11:26:15 UTC | Starting updates to docs (#7116) ### Description This updates the docs with a minor fix to the bundle metadata example and adds diagrams to help explain MONAI, and bundles vs. MAPs. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [x] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> | 27 October 2023, 11:26:15 UTC |
| fa15eec | YunLiu | 26 October 2023, 16:25:37 UTC | simplify `list_data_collate` and `collate_meta_tensor` (#7165) Fixes #5917 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com> | 26 October 2023, 16:25:37 UTC |
| 85243f5 | YunLiu | 25 October 2023, 21:48:54 UTC | Support return dice for each class in `DiceMetric` (#7163) Fixes #7162 Fixes #7164 ### Description Add `return_with_label`, if True or a list, will return the metrics with the corresponding label name, only works when reduction="mean_batch". https://github.com/pytorch/ignite/blob/47b95d087a0f8713a9d24bcfe3a539b08101ba7a/ignite/metrics/metric.py#L424 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 25 October 2023, 21:48:54 UTC |
| cc20c9b | YunLiu | 24 October 2023, 09:17:07 UTC | Refactor `self.weight` in `DiceLoss` and `FocalLoss` (#7158) Fixes #7065 ### Description Remove `self.weight` in `DiceLoss` and `FocalLoss` ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 24 October 2023, 09:17:07 UTC |
| e7feedf | monai-bot | 23 October 2023, 10:10:08 UTC | auto updates (#7155) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 23 October 2023, 10:10:08 UTC |
| 77b1759 | YunLiu | 20 October 2023, 08:59:04 UTC | Using keys in .npz files for `NumpyReader` (#7148) Fixes #7147. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 20 October 2023, 08:59:04 UTC |
| 6e5fdc0 | Katie Link | 19 October 2023, 17:35:24 UTC | 4042 Hugging Face Hub integration (#6454) Fixes #4042 . ### Description - [x] Add functionality to download a model bundle from the Hugging Face Hub. - [x] Add functionality to upload a model bundle to the Hugging Face Hub. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [x] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [x] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: katielink <link.katie.e@gmail.com> | 19 October 2023, 17:35:24 UTC |
| c2e2a96 | Wenqi Li | 19 October 2023, 16:46:02 UTC | 7143 fixes resnet pretrained test (#7144) Fixes #7143 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 19 October 2023, 16:46:02 UTC |
| 9f1168f | vgrau98 | 18 October 2023, 20:37:45 UTC | 7047 simplify resnet pretrained (#7095) Fixes #7047 ### Description Resnet did not support `True` value (not implemented ) for its pretrained flag. 2 implemented behavior: - When pretrained is True, download weights from https://huggingface.co/TencentMedicalNet - When pretrained is a string, loads weights from the path defined by the string ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: vgrau98 <victor.grau93@gmail.com> | 18 October 2023, 20:37:45 UTC |
| 2c9f44c | YunLiu | 18 October 2023, 16:38:55 UTC | Add `in_mm3` in `remove_small_objects` (#7137) Fixes #7034. ### Description Add `in_mm3` in `remove_small_objects`, if `in_mm3=True`, `min_size` will be divided by pixdim when the image is MetaTensor. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 18 October 2023, 16:38:55 UTC |
| 0a3cdd9 | monai-bot | 16 October 2023, 15:59:43 UTC | auto updates (#7132) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 16 October 2023, 15:59:43 UTC |
| 8a70678 | Wenqi Li | 13 October 2023, 12:17:09 UTC | 7017 update releasing 1.3 (#7125) Fixes #7017 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 13 October 2023, 12:17:09 UTC |
| 865972f | YunLiu | 12 October 2023, 10:51:53 UTC | Fix unsuitable default value to bundle_root in ckpt_export (#7124) Fixes #7123 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 12 October 2023, 10:51:53 UTC |
| e36982b | Wenqi Li | 12 October 2023, 09:02:23 UTC | update validation epoch (#7121) - this allows for validation epoch at the very beginning of training - fixes #7122 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 12 October 2023, 09:02:23 UTC |
| 4743945 | Wenqi Li | 11 October 2023, 14:36:14 UTC | update changelog and docs for v1.3 (#7110) part of https://github.com/Project-MONAI/MONAI/issues/7017 fixes #7112 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 11 October 2023, 14:36:14 UTC |
| 2b1e3d0 | YunLiu | 11 October 2023, 12:03:45 UTC | Add support for metatensor in AddGuidanceFromPointsDeepEditd and ResizeGuidanceMultipleLabelDeepEditd (#7115) Fixes #7114 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 11 October 2023, 12:03:45 UTC |
| 8d730cd | Wenqi Li | 10 October 2023, 20:47:10 UTC | 6387 update_kwargs for merging multiple configs (#7109) Fixes #6387 Fixes #5899 ### Description - add api for update_kwargs - add support of merging multiple configs files and dictionaries - remove warning message of directory in `runtests.sh` ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 10 October 2023, 20:47:10 UTC |
| fc1350a | Nic Ma | 10 October 2023, 06:14:18 UTC | 7107 Add support to validate at training start (#7108) Fixes #7107 . ### Description This PR added support to optionally execute validation at training start first, this is useful for transfer learning to validate the initial model. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. Signed-off-by: Nic Ma <nma@nvidia.com> | 10 October 2023, 06:14:18 UTC |
| 5c6d199 | YunLiu | 09 October 2023, 19:08:10 UTC | Code formatting for user specified directories (#7106) Fixes #7099 ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 09 October 2023, 19:08:10 UTC |
| 825021d | YunLiu | 09 October 2023, 09:02:14 UTC | `EnsureTyped` flexible dtype (#7104) Fixes #7102 ### Description Make dtype in `EnsureTyped` configurable as different dtypes for difference keys ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [ ] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [ ] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> | 09 October 2023, 09:02:14 UTC |
| 2b0a95e | monai-bot | 09 October 2023, 07:33:25 UTC | auto updates (#7105) Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: monai-bot <monai.miccai2019@gmail.com> | 09 October 2023, 07:33:25 UTC |
| 7930f85 | YunLiu | 08 October 2023, 10:40:56 UTC | Add weight in `DiceLoss` (#7098) Fixes #7065. ### Description - standardize the naming to be simply "weight". - add this "weight" parameter to `DiceLoss`. ### Types of changes <!--- Put an `x` in all the boxes that apply, and remove the not applicable items --> - [x] Non-breaking change (fix or new feature that would not break existing functionality). - [ ] Breaking change (fix or new feature that would cause existing functionality to change). - [x] New tests added to cover the changes. - [ ] Integration tests passed locally by running `./runtests.sh -f -u --net --coverage`. - [ ] Quick tests passed locally by running `./runtests.sh --quick --unittests --disttests`. - [x] In-line docstrings updated. - [ ] Documentation updated, tested `make html` command in the `docs/` folder. --------- Signed-off-by: KumoLiu <yunl@nvidia.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> | 08 October 2023, 10:40:56 UTC |
