| f786957 | Wenqi Li | 20 September 2021, 20:50:51 UTC | 2914 remove the deprecated API for v0.7 (#2981) * remove deprecated Signed-off-by: Wenqi Li <wenqil@nvidia.com> * min-test list Signed-off-by: Wenqi Li <wenqil@nvidia.com> * preserves tests from tests/test_handler_transform_inverter.py Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 20 September 2021, 20:50:51 UTC |
| 731bad8 | Ali Hatamizadeh | 20 September 2021, 17:20:56 UTC | update multimodal doc and model names (Transchex) (#2979) * update multimodal doc and model names (Transchex) Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> | 20 September 2021, 17:20:56 UTC |
| e2e5e31 | Behrooz | 20 September 2021, 15:35:59 UTC | Add make the name of wsi reader lowercase (#2973) Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 20 September 2021, 15:35:59 UTC |
| ee202fa | Wenqi Li | 20 September 2021, 08:09:26 UTC | enhance affinegrid to use torch backend (#2969) * enhance affinegrid to use torch backend Signed-off-by: Wenqi Li <wenqil@nvidia.com> * style fixes Signed-off-by: Wenqi Li <wenqil@nvidia.com> * codeformat fixes Signed-off-by: Wenqi Li <wenqil@nvidia.com> * backend affien grid Signed-off-by: Wenqi Li <wenqil@nvidia.com> * device support Signed-off-by: Wenqi Li <wenqil@nvidia.com> * less lookup Signed-off-by: Wenqi Li <wenqil@nvidia.com> * create grid with torch backend Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * default to torch create grid Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes unit test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * randaffine with create grid Signed-off-by: Wenqi Li <wenqil@nvidia.com> * create_grid backend change for spatial transforms Signed-off-by: Wenqi Li <wenqil@nvidia.com> * create control grid tensor Signed-off-by: Wenqi Li <wenqil@nvidia.com> * enhance spatial, and crop xforms - Update test_rand_deform_grid.py - center_scale_crop - center_spatial_crop - rand_scale_crop - rand_spatial_crop - rand_spatial_crop_samples Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes invert Signed-off-by: Wenqi Li <wenqil@nvidia.com> * tensor resize, unit test fixes Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 20 September 2021, 08:09:26 UTC |
| e2e2d08 | Richard Brown | 19 September 2021, 12:36:27 UTC | Torch `RandCropByPosNegLabel`, `RandCropByPosNegLabeld`, `RandCropByLabelClasses`, `RandCropByLabelClassesd` (#2967) Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 19 September 2021, 12:36:27 UTC |
| ecbb03b | Nic Ma | 17 September 2021, 17:05:01 UTC | 2231 Enhance tensor transforms (#2966) * [DLMED] enhance tensor transforms Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix mypy Signed-off-by: Nic Ma <nma@nvidia.com> | 17 September 2021, 17:05:01 UTC |
| dc3e263 | Wenqi Li | 17 September 2021, 14:37:53 UTC | fixes tutorial issue 352 (#2968) * fixes tutorial issue 352 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * simplified Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 17 September 2021, 14:37:53 UTC |
| 46e594f | Eric Kerfoot | 16 September 2021, 23:01:16 UTC | Fix for Jupyter plotting (#2964) * Fix for Jupyter plotting Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * Fix for Jupyter plotting Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * Fix for Jupyter plotting Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> | 16 September 2021, 23:01:16 UTC |
| 43a4342 | Behrooz | 16 September 2021, 21:33:36 UTC | Update with cupy.ndarray (#2965) * Update with cupy.ndarray Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Change to use has_cp Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Change the format Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Fix a bug Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 16 September 2021, 21:33:36 UTC |
| 0c39281 | Richard Brown | 16 September 2021, 18:47:26 UTC | torch `SpatialCrop`, `SpatialCropd` (#2963) Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 16 September 2021, 18:47:26 UTC |
| 38403ed | Behrooz | 16 September 2021, 14:37:56 UTC | cuCIM Transform (#2932) * Implement CuCIM wrapper transfrom Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 16 September 2021, 14:37:56 UTC |
| 71ebd91 | Richard Brown | 16 September 2021, 13:03:43 UTC | Torch: `map_binary_to_indices`, `map_classes_to_indices`, `correct_crop_centers`, `generate_pos_neg_label_crop_centers`, `generate_label_classes_crop_centers` (#2958) torch map_binary_to_indices, map_classes_to_indices, correct_crop_centers, generate_pos_neg_label_crop_centers, generate_label_classes_crop_centers | 16 September 2021, 13:03:43 UTC |
| 3b6f479 | Ali Hatamizadeh | 16 September 2021, 08:16:28 UTC | add multi-modal (vision + language) transformers (#2962) * add multimodal transformers Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> | 16 September 2021, 08:16:28 UTC |
| fb2c2e9 | Nic Ma | 16 September 2021, 03:55:44 UTC | [DLMED] fix float64 bug (#2961) Signed-off-by: Nic Ma <nma@nvidia.com> | 16 September 2021, 03:55:44 UTC |
| 0f17aa9 | Wenqi Li | 15 September 2021, 21:03:08 UTC | 2231 Fixes tutorial 353 (#2954) * fixes tutorial 353 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adding type tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * improves type checks Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes flake8 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes as channel first Signed-off-by: Wenqi Li <wenqil@nvidia.com> * type test option Signed-off-by: Wenqi Li <wenqil@nvidia.com> * ndarray suuport Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes unit tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> update Signed-off-by: Wenqi Li <wenqil@nvidia.com> * bash option for windows test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes unit tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * enhance norm intensity tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes merge tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 15 September 2021, 21:03:08 UTC |
| 2f4b582 | Nic Ma | 15 September 2021, 18:42:19 UTC | 2951 Optimize type_conversion logic (#2955) * [DLMED] enhance type conversion Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix CI test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more unit tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> | 15 September 2021, 18:42:19 UTC |
| c624ffc | Nic Ma | 15 September 2021, 14:01:59 UTC | 2948 Enhance the transform to delete items (#2952) * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove unnecessary arg Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix style issue Signed-off-by: Nic Ma <nma@nvidia.com> | 15 September 2021, 14:01:59 UTC |
| ff9c80f | Behrooz | 15 September 2021, 05:09:42 UTC | Add dtype to ToCupy (#2950) * Add dtype to ToCuPy Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add unittests to include dtype Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Implement convert_to_cupy Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Addressed all comments Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Addressed all comments Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add dtype for Sequence Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 15 September 2021, 05:09:42 UTC |
| 7c45d01 | Richard Brown | 14 September 2021, 19:22:24 UTC | All transforms support torch and numpy (#2949) * transforms convert to the necessary type Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 14 September 2021, 19:22:24 UTC |
| a14ed1b | Richard Brown | 14 September 2021, 16:15:16 UTC | AffineGrid, RandAffineGrid, Resample, Affine, RandAffine, Affined, RandAffined, Rand2dElastic, Rand3dElastic, Rand2dElasticd, Rand3dElasticd (#2922) * AffineGrid, RandAffineGrid, Resample Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * Affine, RandAffine, Affined, RandAffined Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * deprecate as_tensor_output Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * fixes Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * remove plotting Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * Rand2dElastic, Rand3dElastic, Rand2dElasticd, Rand3dElasticd Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * CropForeground Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * fix Invertd Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 14 September 2021, 16:15:16 UTC |
| f77a799 | Richard Brown | 14 September 2021, 13:25:52 UTC | Rotate, Rotated, RandRotate, RandRotated (#2945) Rotate, Rotated, RandRotate, RandRotated | 14 September 2021, 13:25:52 UTC |
| f26a712 | Richard Brown | 14 September 2021, 12:00:06 UTC | ScaleIntensityRange, ScaleIntensityRanged, ScaleIntensityRangePercentiles, ScaleIntensityRangePercentilesd (#2943) ScaleIntensityRange, ScaleIntensityRanged, ScaleIntensityRangePercentiles, ScaleIntensityRangePercentilesd | 14 September 2021, 12:00:06 UTC |
| 7ab0711 | Nic Ma | 13 September 2021, 23:54:10 UTC | 2925 Add device option to EnsureType (#2942) * [DLMED] add device option Signed-off-by: Nic Ma <nma@nvidia.com> * look up options for types Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds unit tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 13 September 2021, 23:54:10 UTC |
| 01feacb | Andres Diaz-Pinto | 13 September 2021, 22:36:34 UTC | Add dropout arg in DynUNet init (#2947) * Add dropout arg in DynUNet init Signed-off-by: Andres <diazandr3s@gmail.com> | 13 September 2021, 22:36:34 UTC |
| 8765fc7 | Richard Brown | 13 September 2021, 21:34:28 UTC | ThresholdIntensity, ThresholdIntensityd (#2944) * ThresholdIntensity, ThresholdIntensityd Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 13 September 2021, 21:34:28 UTC |
| 132aa37 | Wenqi Li | 13 September 2021, 18:20:09 UTC | 2715 enhance resnet downsampling block (#2937) * con1_padding -> conv1_padding Signed-off-by: Wenqi Li <wenqil@nvidia.com> * simpler init. Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes 2715 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds 3d tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes flake8 error Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 13 September 2021, 18:20:09 UTC |
| 8651b62 | Nic Ma | 13 September 2021, 16:59:04 UTC | [DLMED] enhance scale intensity transforms (#2941) Signed-off-by: Nic Ma <nma@nvidia.com> | 13 September 2021, 16:59:04 UTC |
| 76dc5c2 | Wenqi Li | 13 September 2021, 15:30:10 UTC | enhance docstring (#2938) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 13 September 2021, 15:30:10 UTC |
| 1c2608f | Wenqi Li | 13 September 2021, 14:37:28 UTC | fixes #2939 (#2940) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 13 September 2021, 14:37:28 UTC |
| c50235c | Nic Ma | 12 September 2021, 03:02:20 UTC | 2920 Enhance padding mode for Tensor data (#2921) * [DLMED] enhance the pad mode Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update all the tensor pad related Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix error tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix GPU tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 12 September 2021, 03:02:20 UTC |
| 448cdca | Behrooz | 11 September 2021, 10:58:22 UTC | Add device to ToTensor (#2926) | 11 September 2021, 10:58:22 UTC |
| e2965db | Nic Ma | 10 September 2021, 11:58:34 UTC | [DLMED] add dict version shuffle (#2918) Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 10 September 2021, 11:58:34 UTC |
| ef09811 | Behrooz | 10 September 2021, 06:58:41 UTC | CuPy to Tensor (#2919) * Add cupy to tensor Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add unittest for cupy>tensor Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 10 September 2021, 06:58:41 UTC |
| 281c17e | Richard Brown | 09 September 2021, 16:46:32 UTC | Torch RandRotate90 (#2915) Torch RandRotate | 09 September 2021, 16:46:32 UTC |
| e52a0fe | Richard Brown | 09 September 2021, 13:32:26 UTC | Torch Zoom (#2916) Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 09 September 2021, 13:32:26 UTC |
| 7f3050a | Nic Ma | 08 September 2021, 16:16:01 UTC | 2898 Merge LocalPatchShuffle with RandCoarseDropout (#2907) * [DLMED] merge LocalPatchShuffle Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance doc-string Signed-off-by: Nic Ma <nma@nvidia.com> | 08 September 2021, 16:16:01 UTC |
| 7cfc8ea | Wenqi Li | 08 September 2021, 11:38:05 UTC | 2901 ndim -> spatial_dims (#2903) * ndim -> spatial_dims Signed-off-by: Wenqi Li <wenqil@nvidia.com> * dimensions -> spatial_dims Signed-off-by: Wenqi Li <wenqil@nvidia.com> * deprecated arg with auto replacement Signed-off-by: Wenqi Li | 08 September 2021, 11:38:05 UTC |
| e24f1b1 | Behrooz | 08 September 2021, 01:43:12 UTC | List Comprehension for ITC (#2906) | 08 September 2021, 01:43:12 UTC |
| b770793 | Behrooz | 06 September 2021, 22:52:09 UTC | Update NVTX Range (#2890) Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update special method replacement | 06 September 2021, 22:52:09 UTC |
| 1ecf5b6 | Jirka Borovec | 06 September 2021, 18:20:02 UTC | rename `n_classes` to `num_classes` (#2842) * rename n_classes Signed-off-by: Jirka <jirka.borovec@seznam.cz> * back compatibility Signed-off-by: Jirka <jirka.borovec@seznam.cz> | 06 September 2021, 18:20:02 UTC |
| 9c7b71f | Nic Ma | 06 September 2021, 15:59:38 UTC | 2885 2899 Add support to support subclass of Tensor or numpy array (#2900) * [DLMED] fix type issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] simplify the change Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> | 06 September 2021, 15:59:38 UTC |
| 245ab94 | Behrooz | 03 September 2021, 15:47:52 UTC | Split On Grid (#2879) * Implement SplitOnGrid Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Implement dictionary-based SplitOnGrid Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update inits Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update docs Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Change imports Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update input logic in SplitOnGrid) Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add unittests for SplitOnGrid and SplitOnGridDict Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Sort import Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Remove imports Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Address comments Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Remove optional Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Address thread safety issues Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 03 September 2021, 15:47:52 UTC |
| 50dcf8d | Jirka Borovec | 02 September 2021, 23:23:48 UTC | split CI package (#2863) * split CI package Signed-off-by: Jirka <jirka.borovec@seznam.cz> * tmpdir Signed-off-by: Jirka <jirka.borovec@seznam.cz> * tmpdir Signed-off-by: Jirka <jirka.borovec@seznam.cz> | 02 September 2021, 23:23:48 UTC |
| 7bfa428 | Nic Ma | 01 September 2021, 05:43:43 UTC | [DLMED] enhance image reader doc-string for multi-files (#2876) Signed-off-by: Nic Ma <nma@nvidia.com> | 01 September 2021, 05:43:43 UTC |
| 9990179 | Nic Ma | 31 August 2021, 23:33:39 UTC | [DLMED] simplify random seed (#2875) Signed-off-by: Nic Ma <nma@nvidia.com> | 31 August 2021, 23:33:39 UTC |
| b0c83db | Nic Ma | 31 August 2021, 19:58:31 UTC | [DLMED] enhance doc-string of ToDevice (#2874) Signed-off-by: Nic Ma <nma@nvidia.com> | 31 August 2021, 19:58:31 UTC |
| e9f6e51 | Wenqi Li | 31 August 2021, 09:11:06 UTC | 2639 documentation for the deprecated API (#2865) * fixes #2639 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typo Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 31 August 2021, 09:11:06 UTC |
| 6dc9b3e | Wenqi Li | 31 August 2021, 08:19:04 UTC | update to use pytorch 21.08 base image (#2867) * update cron tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * temp tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update gpu info Signed-off-by: Wenqi Li <wenqil@nvidia.com> * tmp tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * temp test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * Revert "temp test" This reverts commit 3a5b8f849d077aff121ea55332d23f74d4375a89. Signed-off-by: Wenqi Li <wenqil@nvidia.com> * Revert "tmp tests" This reverts commit e960dac2e0eb81fe518bf0a80b12d6bb1bdf965a. Signed-off-by: Wenqi Li <wenqil@nvidia.com> * Revert "temp tests" This reverts commit 911c3322e6ad731abf7c5a7de3f62ca697b373dd. Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 31 August 2021, 08:19:04 UTC |
| a25b733 | Richard Brown | 30 August 2021, 18:09:47 UTC | DataStats, LabelToMask, Lambda, RandLambda, SqueezeDim, is_module_ver_at_least (#2859) * DataStats, LabelToMask, Lambda, RandLambda, SqueezeDim, is_module_ver_at_least Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 30 August 2021, 18:09:47 UTC |
| 895592e | Nic Ma | 30 August 2021, 15:10:45 UTC | Add thread args to ThreadBuffer (#2862) * [DLMED] add args to ThreadDataLoader Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> | 30 August 2021, 15:10:45 UTC |
| 67aa4cf | Ali Hatamizadeh | 29 August 2021, 23:59:13 UTC | add classification support for ViT Model (#2861) * add classification support for ViT Model Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> * add classification support for ViT Model Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> * add classification support for ViT Model Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 29 August 2021, 23:59:13 UTC |
| c99bd41 | Richard Brown | 29 August 2021, 22:49:21 UTC | EnsureType, RemoveRepeatedChannel, SplitChannel, ToCupy, ToNumpy, ToPil, ToTensor, Transpose (#2850) * backends -> backend Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * code format Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * code format2 Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * AddChannel, AsChannelFirst, AsChannelLast, EnsureChannelFirst, Identity, RepeatChannel Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * moveaxis backwards compatible Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * code format Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * EnsureType, RemoveRepeatedChannel, SplitChannel, ToCupy, ToNumpy, ToPil, ToTensor, Transpose Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * trigger ci/cd Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * permute requires positive indices Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * correct permute Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * correct permute Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * has_pil Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 29 August 2021, 22:49:21 UTC |
| fe6ac0a | Richard Brown | 27 August 2021, 15:11:57 UTC | AddChannel, AsChannelFirst, AsChannelLast, EnsureChannelFirst, Identity, RepeatChannel (#2840) | 27 August 2021, 15:11:57 UTC |
| aa5fa1d | Wenqi Li | 27 August 2021, 13:50:18 UTC | add cupy tests (#2858) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 27 August 2021, 13:50:18 UTC |
| 321454c | Nic Ma | 27 August 2021, 10:34:38 UTC | [DLMED] add missing return (#2857) Signed-off-by: Nic Ma <nma@nvidia.com> | 27 August 2021, 10:34:38 UTC |
| f99ebda | Andres Diaz-Pinto | 27 August 2021, 09:12:09 UTC | Add deepedit transforms (#2810) * Add deepedit transforms Signed-off-by: Andres <diazandr3s@gmail.com> * Run unittests - autofix Signed-off-by: Andres <diazandr3s@gmail.com> * Update transform Signed-off-by: Andres <diazandr3s@gmail.com> | 27 August 2021, 09:12:09 UTC |
| f981ad0 | Nic Ma | 27 August 2021, 00:42:16 UTC | 2707 Fill the outside of holes (#2848) * [DLMED] add support to fill outside Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add paper link for cutout Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 27 August 2021, 00:42:16 UTC |
| dd56514 | Jirka Borovec | 26 August 2021, 21:19:44 UTC | extend ResNet pretrained info (#2854) Signed-off-by: Jirka <jirka.borovec@seznam.cz> | 26 August 2021, 21:19:44 UTC |
| 3eb71c7 | Vishwesh | 26 August 2021, 19:33:29 UTC | Local Patch Shuffle Transform Initial Version Added (#2757) * Local Patch Shuffle Transform Initial Version Added Signed-off-by: vnath <vnath@nvidia.com> | 26 August 2021, 19:33:29 UTC |
| ce139f6 | Jirka Borovec | 26 August 2021, 17:19:30 UTC | CI: pre-commit (#2843) * add pre-commit Signed-off-by: Jirka <jirka.borovec@seznam.cz> | 26 August 2021, 17:19:30 UTC |
| 1065dad | Wenqi Li | 26 August 2021, 16:24:25 UTC | temp. resume github premerge tests (#2853) * resume github premerge tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes #2821 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update group names Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 26 August 2021, 16:24:25 UTC |
| 415f994 | Yiheng Wang | 26 August 2021, 01:23:40 UTC | 2812 enhance swish and efficientnet (#2813) * enhance swish Signed-off-by: Yiheng Wang <vennw@nvidia.com> * add inplace to swish Signed-off-by: Yiheng Wang <vennw@nvidia.com> * add efn features Signed-off-by: Yiheng Wang <vennw@nvidia.com> * add more pretrained weights url Signed-off-by: Yiheng Wang <vennw@nvidia.com> * fix flake8 errors Signed-off-by: Yiheng Wang <vennw@nvidia.com> * use look up option Signed-off-by: Yiheng Wang <vennw@nvidia.com> * fix deepsource issues Signed-off-by: Yiheng Wang <vennw@nvidia.com> * fix type issues Signed-off-by: Yiheng Wang <vennw@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 26 August 2021, 01:23:40 UTC |
| 26f8446 | Richard Brown | 25 August 2021, 19:45:36 UTC | ShiftIntensityd, RandShiftIntensityd (#2839) backends -> backend | 25 August 2021, 19:45:36 UTC |
| a88976c | Nic Ma | 25 August 2021, 17:40:56 UTC | 2707 Add support to randomly fill cutout holes (#2837) * [DLMED] support random fill Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update for test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update dict transform Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix mypy Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] support auto computing min and max Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 25 August 2021, 17:40:56 UTC |
| acf4a9f | Richard Brown | 25 August 2021, 13:57:49 UTC | backends -> backend (#2838) * backends -> backend Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * code format Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * code format2 Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 25 August 2021, 13:57:49 UTC |
| fa5bc15 | Richard Brown | 25 August 2021, 04:22:26 UTC | Scale intensity (#2832) * all close Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * assert_allclose Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * ScaleIntensity Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 25 August 2021, 04:22:26 UTC |
| 38ecaef | Behrooz | 24 August 2021, 23:03:45 UTC | Update Range decorator (#2834) * Change default methods for nn.Module Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Remove DataLoader Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 24 August 2021, 23:03:45 UTC |
| fe559e5 | Richard Brown | 24 August 2021, 18:46:14 UTC | Normalize intensity (#2831) * all close Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * assert_allclose Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * NormalizeIntensity Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 24 August 2021, 18:46:14 UTC |
| b4def1a | Richard Brown | 24 August 2021, 17:19:16 UTC | all close (#2829) Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 24 August 2021, 17:19:16 UTC |
| fab8467 | Richard Brown | 24 August 2021, 13:21:43 UTC | Torch flip (#2822) torch transforms - RandRicianNoise, StdShiftIntensity, RandStdShiftIntensity | 24 August 2021, 13:21:43 UTC |
| 42ad892 | Behrooz | 24 August 2021, 11:28:57 UTC | NVTX Range universal decorator (#2814) * Implement NVTX Range decorator and context manager Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Implement unittests for nvtx range Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update utils init Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Remove Range transform in favor of Range decorator Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update docs Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update docstrings Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update description Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Remove optional Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Change torch testing to numpy testing Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Handle special methods Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Change typing Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * REmove torch.nn Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update method resolution logic Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update tests Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Change _call_impl to __call__ Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Remove debugging outputs Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 24 August 2021, 11:28:57 UTC |
| aad8bb2 | Wenqi Li | 23 August 2021, 21:49:36 UTC | sunset nightly tests (#2820) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 23 August 2021, 21:49:36 UTC |
| 93d467d | Richard Brown | 23 August 2021, 18:17:14 UTC | torch transforms - RandRicianNoise, StdShiftIntensity, RandStdShiftIntensity (#2815) * torch transforms - RandRicianNoise, StdShiftIntensity, RandStdShiftIntensity Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * unused imports Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * NdarrayTensorUnion Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * code review Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * simplify backend Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * code format Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * fix test Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * in place transforms Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 23 August 2021, 18:17:14 UTC |
| c39f6fa | Wenqi Li | 21 August 2021, 06:21:52 UTC | sunset premerge self-hosted pipelines (#2803) Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Mohammad Adil <madil@nvidia.com> | 21 August 2021, 06:21:52 UTC |
| 2c7ec57 | Nic Ma | 20 August 2021, 01:23:19 UTC | [DLMED] enhance CropForegroundd transform (#2808) Signed-off-by: Nic Ma <nma@nvidia.com> | 20 August 2021, 01:23:19 UTC |
| 7659869 | Richard Brown | 19 August 2021, 22:38:02 UTC | Pad base class (#2802) * print backends of all MONAI transforms Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * Pad base class Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 19 August 2021, 22:38:02 UTC |
| 5fe5a0b | Richard Brown | 19 August 2021, 18:45:23 UTC | print backends of all MONAI transforms (#2801) print backends of all MONAI transforms | 19 August 2021, 18:45:23 UTC |
| 7f05d78 | Richard Brown | 19 August 2021, 12:05:21 UTC | get number of data conversions (#2800) * get number of data conversions Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * improve docs Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * move fn to utility Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * code format Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 19 August 2021, 12:05:21 UTC |
| ce196e0 | Nic Ma | 19 August 2021, 08:40:38 UTC | [DLMED] enhance samples crop (#2804) Signed-off-by: Nic Ma <nma@nvidia.com> | 19 August 2021, 08:40:38 UTC |
| e223932 | Nic Ma | 18 August 2021, 13:11:18 UTC | 2796 Enhance doc-string of cache datasets (#2799) * [DLMED] enhance doc Signed-off-by: Nic Ma <nma@nvidia.com> * Update monai/data/dataset.py Co-authored-by: Wenqi Li <wenqil@nvidia.com> Signed-off-by: Nic Ma <nma@nvidia.com> * Update monai/data/dataset.py Co-authored-by: Wenqi Li <wenqil@nvidia.com> Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 18 August 2021, 13:11:18 UTC |
| 28856b8 | Nic Ma | 18 August 2021, 01:22:18 UTC | 2789 Add ToDevice transform (#2791) * [DLMED] add ToDevice transform Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix type-hints Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] inherit Transform Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add kwargs Signed-off-by: Nic Ma <nma@nvidia.com> | 18 August 2021, 01:22:18 UTC |
| 46d5f2a | Behrooz | 17 August 2021, 22:08:46 UTC | Add NVTX handlers (#2765) * Add NVTX handlers Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 17 August 2021, 22:08:46 UTC |
| cc31355 | Ev Lacey | 17 August 2021, 19:32:42 UTC | Update license example (#2788) Signed-off-by: Everett Lacey <elacey@nvidia.com> | 17 August 2021, 19:32:42 UTC |
| 0840dbb | Yiheng Wang | 17 August 2021, 17:36:43 UTC | enhance dynunet docstrings (#2792) * enhance dynunet docstrings Signed-off-by: Yiheng Wang <vennw@nvidia.com> | 17 August 2021, 17:36:43 UTC |
| cf6edc7 | Richard Brown | 17 August 2021, 16:15:33 UTC | RandGaussianNoise and SavitzkyGolaySmooth Torch/NumpyTransforms (#2740) * RandGaussianNoise and SavitzkyGolaySmooth Torch/NumpyTransforms Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 17 August 2021, 16:15:33 UTC |
| a38bae3 | Wenqi Li | 17 August 2021, 13:48:19 UTC | remove post-merge dev branch test (#2786) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 17 August 2021, 13:48:19 UTC |
| dea3f70 | Wenqi Li | 17 August 2021, 09:07:55 UTC | fixes #2771 (#2793) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 17 August 2021, 09:07:55 UTC |
| 2bf67d4 | Nic Ma | 17 August 2021, 05:59:35 UTC | [DLMED] fix typo (#2790) Signed-off-by: Nic Ma <nma@nvidia.com> | 17 August 2021, 05:59:35 UTC |
| 2d99ae5 | Yiheng Wang | 16 August 2021, 17:42:48 UTC | 2697 enhance norm (#2784) * enhance norm Signed-off-by: Yiheng Wang <vennw@nvidia.com> | 16 August 2021, 17:42:48 UTC |
| 4801ecf | Richard Brown | 16 August 2021, 15:59:58 UTC | add unittest.main (#2783) Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 16 August 2021, 15:59:58 UTC |
| 1cacfd3 | Nic Ma | 16 August 2021, 09:11:03 UTC | [DLMED] add numpy pad args (#2780) Signed-off-by: Nic Ma <nma@nvidia.com> | 16 August 2021, 09:11:03 UTC |
| db81f40 | Yiheng Wang | 15 August 2021, 11:13:51 UTC | 2768 Add parameter bias for conv blocks (#2773) * add bias option Signed-off-by: Yiheng Wang <vennw@nvidia.com> * fix black error Signed-off-by: Yiheng Wang <vennw@nvidia.com> | 15 August 2021, 11:13:51 UTC |
| 7ea09bf | Yiheng Wang | 14 August 2021, 08:51:05 UTC | Fix `UpSample` issue and enhance `UpCat` (#2766) * add unetdecoder Signed-off-by: Yiheng Wang <vennw@nvidia.com> * remove decoder Signed-off-by: Yiheng Wang <vennw@nvidia.com> * recover mis deleted lines Signed-off-by: Yiheng Wang <vennw@nvidia.com> * fix black error Signed-off-by: Yiheng Wang <vennw@nvidia.com> | 14 August 2021, 08:51:05 UTC |
| 5fe8440 | Nic Ma | 13 August 2021, 23:24:58 UTC | [DLMED] enhance the doc of transform (#2767) Signed-off-by: Nic Ma <nma@nvidia.com> | 13 August 2021, 23:24:58 UTC |
| 8b5ea0f | Behrooz | 13 August 2021, 16:26:49 UTC | NVTX Range Transform (#2756) * Implement Range Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add tests for Range Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update docs for Range Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update docstring Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update imports Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add RandRange to tests Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 13 August 2021, 16:26:49 UTC |
| e91065c | Nic Ma | 13 August 2021, 13:44:54 UTC | [DLMED] enhance partition_data_classes (#2761) Signed-off-by: Nic Ma <nma@nvidia.com> | 13 August 2021, 13:44:54 UTC |
| 6f12e18 | Nic Ma | 13 August 2021, 11:11:03 UTC | 2749 Fix ThreadDataLoader reset (#2750) * [DLMED] fix continuously run Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] remove out-date comment Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 13 August 2021, 11:11:03 UTC |
| 2ca9710 | Nic Ma | 13 August 2021, 06:51:24 UTC | 2746 Add round support to AsDiscrete transform (#2753) * [DLMED] add round_values Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 13 August 2021, 06:51:24 UTC |
| a7d4574 | Wenqi Li | 13 August 2021, 00:59:30 UTC | 2743 - no extension check for user specified reader (#2751) * no extension check for user specified reader; allow Path object | 13 August 2021, 00:59:30 UTC |
| a6cf9b6 | Lyndon Boone | 12 August 2021, 18:21:05 UTC | [WIP] OneOf Transform (#2551) * Added OneOf class Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * Clean up OneOf constructor Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * add flatten, len and unit test Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * Added unit tests and inverse method Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * rename test Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * flatten tests Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * add inverse Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> Co-authored-by: Richard Brown <33289025+rijobro@users.noreply.github.com> | 12 August 2021, 18:21:05 UTC |
