| 71ff399 | Wenqi Li | 16 February 2022, 20:45:06 UTC | update changelog for v0.8.1 and prepare apps.mmar module for the updates (#3489) * update changelog for v0.8.1 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * rc4 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * prepare for mmar verion updates Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update for 0.8.1 Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 16 February 2022, 20:46:21 UTC |
| 3a08450 | Wenqi Li | 14 February 2022, 22:15:52 UTC | following https://github.com/Project-MONAI/tutorials/issues/545 (#3802) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 16 February 2022, 16:10:33 UTC |
| 4e09627 | Yiheng Wang | 14 February 2022, 14:14:12 UTC | change raise error to warnings for some metrics (#3804) Signed-off-by: Yiheng Wang <vennw@nvidia.com> | 16 February 2022, 16:10:26 UTC |
| b2bd500 | Wenqi Li | 13 February 2022, 21:05:14 UTC | 3791 orientation xform warning spatial dims (#3792) * fixes #3791 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update docstring of invertd, update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typo Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 16 February 2022, 16:10:07 UTC |
| 3785171 | Nic Ma | 09 February 2022, 17:35:53 UTC | 3744 Add `save_state` utility to handle saving logic (#3780) * [DLMED] add save_state utility Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add atomic and func Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] refactor saving logic Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] restore persistent dataset Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] simplify kwargs Signed-off-by: Nic Ma <nma@nvidia.com> | 09 February 2022, 18:42:42 UTC |
| d27ab6c | Wenqi Li | 28 January 2022, 10:12:39 UTC | 3725 fixes download test (#3728) * fixes test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * skip when downloading fails Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 13:36:00 UTC |
| d391b16 | Wenqi Li | 09 January 2022, 23:11:02 UTC | 3616 test downloading issues (#3617) * 3616 test downloading issues Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 13:26:32 UTC |
| 4826824 | Wenqi Li | 09 February 2022, 12:45:50 UTC | tests workaround Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 12:52:40 UTC |
| f9e68d2 | Wenqi Li | 09 February 2022, 10:58:40 UTC | autoformatting Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 12:40:37 UTC |
| 8db6307 | Nic Ma | 08 February 2022, 12:04:39 UTC | 3769 Enhance logger logic of StatsHandler and DataStats (#3774) * [DLMED] enhance logger Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix packaging test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] totally update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update handlers Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update tutorial link Signed-off-by: Nic Ma <nma@nvidia.com> | 09 February 2022, 12:40:37 UTC |
| 0dbf06c | Nic Ma | 06 February 2022, 21:35:27 UTC | 3763 Enhance the doc of `ThreadDataLoader` for `num_workers` (#3770) | 09 February 2022, 12:40:37 UTC |
| 227bad0 | Nic Ma | 04 February 2022, 23:49:46 UTC | 3765 Enhance `create_multigpu_supervised_XXX` for distributed (#3768) * [DLMED] add check for devices Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 09 February 2022, 12:40:37 UTC |
| 1d693a7 | Nic Ma | 03 February 2022, 09:24:56 UTC | 3747 Enhance errors and docs according to Youtube feedback (#3759) * [DLMED] enhance missing key error Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 09 February 2022, 12:40:37 UTC |
| df25a23 | Nic Ma | 01 February 2022, 14:34:01 UTC | 3734 Enhance `CacheDataset` to avoid duplicated cache (#3739) * [DLMED] add HashCacheDataset Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] skip min test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 12:40:37 UTC |
| d41d45b | Wenqi Li | 31 January 2022, 22:52:32 UTC | 3750 skip setuptool 60.6 (#3751) * ignore 60.6.0 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * workaround #3752 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes windows issue Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 12:40:37 UTC |
| 904a937 | Wenqi Li | 27 January 2022, 18:52:04 UTC | update bbox docstring (#3724) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 11:33:45 UTC |
| 7c748ae | Yiheng Wang | 27 January 2022, 10:59:07 UTC | 3716 enhance doc-strings of DenseNet (#3717) * add non-determinism tips Signed-off-by: Yiheng Wang <vennw@nvidia.com> * fix the name error Signed-off-by: Yiheng Wang <vennw@nvidia.com> | 09 February 2022, 11:33:45 UTC |
| c2dbd08 | Wenqi Li | 26 January 2022, 11:55:09 UTC | fixes `grid_sample`, `interpolate` URLs (#3712) * fixes grid_sample, interpolate URLs Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 11:33:45 UTC |
| 533d049 | Nic Ma | 26 January 2022, 09:47:57 UTC | [DLMED] fix mode issue (#3715) Signed-off-by: Nic Ma <nma@nvidia.com> | 09 February 2022, 11:33:45 UTC |
| c3aea07 | Nic Ma | 25 January 2022, 23:52:46 UTC | 3710 Add support to set delimiter for CSV files and change default to comma (#3711) * [DLMED] add support to config delimiter Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 09 February 2022, 11:33:45 UTC |
| 84f25ff | Wenqi Li | 24 January 2022, 18:18:04 UTC | compiler warnings (#3698) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 11:33:45 UTC |
| 8d7944f | Josafat-Mattias Burmeister | 24 January 2022, 14:41:54 UTC | Fix differentiability of generalized Dice loss (#3619) * fix differentiability of generalized Dice loss Signed-off-by: Josafat-Mattias Burmeister <josafat-mattias.burmeister@student.hpi.de> * fix weight clamping for the case that is True Signed-off-by: Josafat-Mattias Burmeister <josafat-mattias.burmeister@student.hpi.de> * add test case for batch mode Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 11:33:45 UTC |
| 95db697 | Nic Ma | 21 January 2022, 16:40:30 UTC | 3695 Update CI to ignite 0.4.8 (#3696) * [DLMED] update ignite to 0.4.8 Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix format issue Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 11:33:45 UTC |
| 70f8f66 | Wenqi Li | 21 January 2022, 12:00:20 UTC | remove tensor-array conversion in `Orientation` (#3687) * remove tensor-array convertions Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update backend Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update tests, remove meshgrid warnings Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typing issue Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes import Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 February 2022, 11:33:38 UTC |
| 8d362c1 | Nic Ma | 21 January 2022, 09:28:58 UTC | 3686 Skip workflow run if data is empty or the specified epoch_length is 0 (#3690) * [DLMED] check 0 length Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add dist tests Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:58:46 UTC |
| 821a7c5 | Wenqi Li | 20 January 2022, 01:08:31 UTC | support stack of images with channels (#3680) * support stack of images with channels Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 21 January 2022, 09:58:46 UTC |
| fe757be | Nic Ma | 19 January 2022, 16:14:07 UTC | 3670 Fix channel_dim in ITKReader and add in it NibabelReader (#3678) * [DLMED] fix channel_dim issue in ITKReader, add it in NibabelReader Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] restore LoadImaged test Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:58:46 UTC |
| 967c643 | Nic Ma | 19 January 2022, 02:24:33 UTC | 3672 Add more messages for AUC warning (#3676) * [DLMED] change to warning Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more error message Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] simplify the messages Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:58:44 UTC |
| 8a25812 | Nic Ma | 18 January 2022, 16:04:00 UTC | [DLMED] change to warning (#3675) Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:55:35 UTC |
| be10900 | Nic Ma | 14 January 2022, 16:22:06 UTC | [DLMED] add label transform (#3666) Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:48:36 UTC |
| eb8d3b2 | Nic Ma | 14 January 2022, 11:16:58 UTC | 3661 Add default values to CopyItems transform (#3662) * [DLMED] add default values Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:47:49 UTC |
| 8888458 | Wenqi Li | 13 January 2022, 22:31:53 UTC | Delete testdata.nrrd (#3658) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 21 January 2022, 09:47:16 UTC |
| ecc8489 | Nic Ma | 13 January 2022, 13:24:39 UTC | 3648 Enhance correct centers for crop (#3652) * [DLMED] add missing doc-string Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance correct centers Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:44:07 UTC |
| fab01ae | Nic Ma | 13 January 2022, 04:14:12 UTC | 3578 Support single channel with OneHot format in KeepLargestConnectedComponents (#3647) * [DLMED] support single channel One-Hot Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:42:22 UTC |
| a9d6dde | Nic Ma | 12 January 2022, 11:45:13 UTC | [DLMED] add missing doc-string (#3646) Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:41:27 UTC |
| c77c0b1 | Nic Ma | 11 January 2022, 17:18:30 UTC | 3632 Enhance GridPatchDataset for iterable API and data source (#3636) * [DLMED] update GridPatchDataset Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix test typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update for windows Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix windows test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update test Signed-off-by: Nic Ma <nma@nvidia.com> | 21 January 2022, 09:41:07 UTC |
| a151ca8 | Wenqi Li | 11 January 2022, 11:13:51 UTC | capture windows permission error (#3633) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 21 January 2022, 09:39:31 UTC |
| 5807f5d | Wenqi Li | 10 January 2022, 14:38:59 UTC | 3628 0-d array to_contiguous (#3629) * 0-d array Signed-off-by: Wenqi Li <wenqil@nvidia.com> * handling string types Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 10 January 2022, 15:09:08 UTC |
| 5353d39 | Nic Ma | 10 January 2022, 09:48:02 UTC | [DLMED] fix dtype issue (#3625) Signed-off-by: Nic Ma <nma@nvidia.com> | 10 January 2022, 15:09:01 UTC |
| 941f7d3 | Nic Ma | 09 January 2022, 20:21:11 UTC | 3610 Add ascontiguous utility and check in CacheDataset (#3614) * [DLMED] add ascontiguous Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance CacheDataset Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] export to utility Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add to subclasses Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix antipatterns Signed-off-by: Nic Ma <nma@nvidia.com> | 10 January 2022, 15:08:32 UTC |
| a30f170 | Nic Ma | 07 January 2022, 11:28:09 UTC | 3600 Apply unused `kwargs` for 3rd party APIs in WSIReader (#3601) * [DLMED] add kwargs Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix doc typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 10 January 2022, 15:07:31 UTC |
| fe1a259 | Nic Ma | 07 January 2022, 00:27:32 UTC | 3581 Enhance `slice_channels` utility function (#3585) * [DLMED] enhance slice_channels Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add flag Signed-off-by: Nic Ma <nma@nvidia.com> | 10 January 2022, 15:07:17 UTC |
| c550810 | Nic Ma | 05 January 2022, 11:49:53 UTC | 498 Add logger_handler to LrScheduleHandler (#3570) * [DLMED] add log handler Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix CI tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix CI test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] test CI Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix logging Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] temp test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix wrong unit test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix wrong test cases Signed-off-by: Nic Ma <nma@nvidia.com> | 10 January 2022, 15:07:06 UTC |
| 4687a0c | Wenqi Li | 04 January 2022, 12:33:21 UTC | 3565 - adds metadata when loading dicom series (#3566) * adds metadata when loading dicom series Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes timed tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 10 January 2022, 15:06:49 UTC |
| 82d2f16 | Nic Ma | 01 January 2022, 11:07:10 UTC | 3559 Enhance `DatasetSummary` for several points (#3560) * [DLMED] update dataset summary Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance data type Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix pickle issue Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 10 January 2022, 15:05:32 UTC |
| 8f317dd | Nic Ma | 01 January 2022, 09:59:48 UTC | [DLMED] fix mypy errors (#3562) Signed-off-by: Nic Ma <nma@nvidia.com> | 04 January 2022, 12:12:33 UTC |
| 5bce120 | Wenqi Li | 31 December 2021, 01:09:14 UTC | skipping pretraining network loading when downloading is unsuccessful (#3558) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 04 January 2022, 12:12:25 UTC |
| cb4dd49 | Nic Ma | 24 December 2021, 12:31:42 UTC | [DLMED] enhance set_determinism (#3547) Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 04 January 2022, 12:11:53 UTC |
| 1825acd | Nic Ma | 24 December 2021, 10:47:07 UTC | 3539 Remove decollate warning (#3545) * [DLMED] remove warning Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> | 04 January 2022, 12:11:45 UTC |
| bf344c6 | Nic Ma | 22 December 2021, 17:10:52 UTC | 3525 Fix invertible issue in OneOf compose (#3530) * [DLMED] fix oneof Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add more unit tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update index Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * Revert "[DLMED] update according to comments" This reverts commit c6c3a35f451828570216622ee42c9a25caa1a769. Signed-off-by: Nic Ma <nma@nvidia.com> * Revert "[DLMED] update index" This reverts commit 649a7c59e094283be9625b7b496c53b5884265ab. Signed-off-by: Nic Ma <nma@nvidia.com> | 04 January 2022, 12:06:41 UTC |
| 6ac68ce | Wenqi Li | 20 December 2021, 11:27:49 UTC | avoid 60.0.0 (#3514) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 04 January 2022, 12:05:09 UTC |
| 64c69ca | Wenqi Li | 16 December 2021, 12:15:04 UTC | Removes redundant casting -- ensure tuple (#3495) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 04 January 2022, 12:04:13 UTC |
| bf133e6 | Behrooz | 14 December 2021, 16:42:41 UTC | Improve NVTX Range Naming (#3484) * Update to not include number for the name of the first range Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update CuCIM and TorchVision wrappers to include name Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update nvtx range to append undelying class for wrapper tranforms Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add new test cases to cover changes Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update cucim and torchvision check Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 04 January 2022, 12:03:55 UTC |
| 9ccc5ee | Nic Ma | 14 December 2021, 11:08:45 UTC | 3465 Support string as dtype (#3478) * [DLMED] support string dtype Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance dtype in ToCupy Signed-off-by: Nic Ma <nma@nvidia.com> | 14 December 2021, 11:29:24 UTC |
| 45af170 | Yiheng Wang | 14 December 2021, 07:14:55 UTC | fix link error (#3488) Signed-off-by: Yiheng Wang <vennw@nvidia.com> | 14 December 2021, 11:29:24 UTC |
| 2cbb54c | Nic Ma | 13 December 2021, 22:23:09 UTC | Add Iteration base class (#3472) * [DLMED] add Iteration base class Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 14 December 2021, 11:29:24 UTC |
| d386213 | Nic Ma | 12 December 2021, 08:10:37 UTC | 3466 3467 Add `channel_wise` and correct doc-string (#3469) * [DLMED] add channel-wise Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] skip test if before 1.7 Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 12 December 2021, 08:10:37 UTC |
| 89f0bd4 | Nic Ma | 10 December 2021, 13:48:31 UTC | Add missing components to API doc (#3468) * [DLMED] add missing docs Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add missing components Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix test Signed-off-by: Nic Ma <nma@nvidia.com> | 10 December 2021, 13:48:31 UTC |
| 5b36d02 | Nic Ma | 10 December 2021, 10:31:29 UTC | 3444 Add DatasetFunc (#3456) * [DLMED] add dataset generator Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add DatasetGenerator Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix wrong test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] simplify according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove return Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update rtol for CI Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 10 December 2021, 10:31:29 UTC |
| 4b5ad0b | Wenqi Li | 09 December 2021, 20:24:40 UTC | deprecate reduction (#3464) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 December 2021, 20:24:40 UTC |
| 82576e7 | Wenqi Li | 09 December 2021, 14:53:03 UTC | revise MILModel docstring (#3459) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 December 2021, 14:53:03 UTC |
| d2543ad | Wenqi Li | 09 December 2021, 13:37:46 UTC | adds the missing imports (#3462) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 09 December 2021, 13:37:46 UTC |
| a7bc4a3 | Richard Brown | 08 December 2021, 16:59:42 UTC | improve error message if reader nott available (#3457) improve error message if reader nott available | 08 December 2021, 16:59:42 UTC |
| 29e9ab3 | Wenqi Li | 07 December 2021, 17:19:42 UTC | 471- fixes deprecated args (#3447) * fixes deprecated args Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 07 December 2021, 17:19:42 UTC |
| 98c1c43 | Yiheng Wang | 07 December 2021, 14:57:26 UTC | 3293 Remove extra deep supervision modules of DynUNet (#3427) * enhance dynunet Signed-off-by: Yiheng Wang <vennw@nvidia.com> * fix black issue Signed-off-by: Yiheng Wang <vennw@nvidia.com> * use strict=False Signed-off-by: Yiheng Wang <vennw@nvidia.com> * fix black 21.12 error Signed-off-by: Yiheng Wang <vennw@nvidia.com> * enhance code and update docstring Signed-off-by: Yiheng Wang <vennw@nvidia.com> | 07 December 2021, 14:57:26 UTC |
| a17813b | Nic Ma | 07 December 2021, 11:24:32 UTC | Enhance deprecated arg for kwargs in CSV datasets (#3446) * [DLMED] fix deprecated arg Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 07 December 2021, 11:24:32 UTC |
| 8a47227 | Nic Ma | 07 December 2021, 08:47:43 UTC | Add base class for workflows (#3445) * [DLMED] add BaseWorkflow Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] add *args, **kwargs Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 07 December 2021, 08:47:43 UTC |
| f3e7cc0 | Nic Ma | 06 December 2021, 14:38:40 UTC | 3430 support dataframes and streams in CSVDataset (#3440) * [DLMED] add dataframe Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance CSV iterable dataset Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typehints Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add comment Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix file close issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix doc Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 06 December 2021, 14:38:40 UTC |
| 0935d5a | Nic Ma | 03 December 2021, 06:15:53 UTC | 3429 Enhance the scalar write logic of TensorBoardStatsHandler (#3431) * [DLMED] extract write logic Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 03 December 2021, 06:15:53 UTC |
| f6a0c87 | Behrooz | 02 December 2021, 22:01:04 UTC | Update TiffFile backend in WSIReader (#3438) * Update TiffFile backend to read only the entire image Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 02 December 2021, 22:01:04 UTC |
| 035f91c | Wenqi Li | 02 December 2021, 20:41:14 UTC | update create_file_basename (#3436) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 02 December 2021, 20:41:14 UTC |
| ad0f866 | Behrooz | 02 December 2021, 09:20:47 UTC | 3415 Update WSIReader (#3417) * Update WSIReader level/location/size calculation Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update location downsampling Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update tests and add a new test case Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Update few names and logics Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Fix the dependency issue Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Check for imagecodecs + tifffile Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Remove new test case that uses too much memory Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add new case and ignore level=0 for TiffFile Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Address comments Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> Co-authored-by: Nic Ma <nma@nvidia.com> | 02 December 2021, 09:20:47 UTC |
| f94e768 | Wenqi Li | 01 December 2021, 13:00:13 UTC | 3194 update vitautoenc for 2d (#3420) * update vitautoenc Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on the comments; compatibility with the previous model weights Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 01 December 2021, 13:00:13 UTC |
| 0b077da | Patricio Astudillo | 01 December 2021, 12:13:52 UTC | Passing the activation function of the SegResNet to the Residual Blocks (#3419) * Update segresnet_block.py making the activation function a parameter to the class of the ResBlock * Update segresnet.py * passing activation to the residual blocks * little change * signed Signed-off-by: Patricio Astudillo <patricio.astudillo@robovision.ai> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update Signed-off-by: Wenqi Li <wenqil@nvidia.com> * [DLMED] add args and update default (#3418) Signed-off-by: Nic Ma <nma@nvidia.com> Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update docstrings Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Patricio Astudillo <patricio.astudillo@robovision.ai> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Nic Ma <nma@nvidia.com> | 01 December 2021, 12:13:52 UTC |
| fc9abb9 | Nic Ma | 01 December 2021, 11:29:56 UTC | 3392 enhance reduction doc-string for Nan values (#3424) * [DLMED] enhance not-nan reduction Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 01 December 2021, 11:29:56 UTC |
| ff9bbfa | Nic Ma | 30 November 2021, 09:15:03 UTC | [DLMED] add args and update default (#3418) Signed-off-by: Nic Ma <nma@nvidia.com> | 30 November 2021, 09:15:03 UTC |
| 071264d | Wenqi Li | 30 November 2021, 01:58:13 UTC | fixes pickle mod (#3416) * fixes pickle mod Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update pickle Signed-off-by: Wenqi Li <wenqil@nvidia.com> * docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 30 November 2021, 01:58:13 UTC |
| 12f74d3 | Nic Ma | 29 November 2021, 13:06:37 UTC | 3402 Add support to set other pickle related args (#3412) * [DLMED] add support for other pickle Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] test flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] test flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 29 November 2021, 13:06:37 UTC |
| 8a1454a | Nic Ma | 26 November 2021, 23:37:28 UTC | 3398 Support 3D RGB image in matshow3d (#3400) * [DLMED] add channel dim Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add RGB support Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 26 November 2021, 23:37:28 UTC |
| 7d4386f | Wenqi Li | 26 November 2021, 17:15:32 UTC | fixes docstring ref. (#3408) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 26 November 2021, 17:15:32 UTC |
| 4a3db69 | Nic Ma | 26 November 2021, 15:18:29 UTC | 3405 Enhance doc-string of MIL model for data shape (#3407) * [DLMED] enhance doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update based on Yiheng's comments Signed-off-by: Nic Ma <nma@nvidia.com> | 26 November 2021, 15:18:29 UTC |
| 1763381 | Wenqi Li | 26 November 2021, 13:44:35 UTC | update weekly build prefix (#3406) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 26 November 2021, 13:44:35 UTC |
| 714d00d | Wenqi Li | 25 November 2021, 18:16:28 UTC | 3404 fixes crop types (#3403) * fixes crop types Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes dtypes Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 25 November 2021, 18:16:28 UTC |
| d625b61 | Wenqi Li | 25 November 2021, 16:11:05 UTC | fixes typos/style in dints.py (#3395) * fixes typos Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typos Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 25 November 2021, 16:11:05 UTC |
| dca8b1c | Nic Ma | 25 November 2021, 13:06:07 UTC | [DLMED] postpone remove version (#3399) Signed-off-by: Nic Ma <nma@nvidia.com> | 25 November 2021, 13:06:07 UTC |
| 3915492 | Nic Ma | 25 November 2021, 10:24:24 UTC | 3365 update highlight 0.8 (#3381) * [DLMED] update highlights for v0.8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add tutorial link Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add MLFlow related Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update description and charts Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update chart name Signed-off-by: Nic Ma <nma@nvidia.com> * update docs Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update dints link Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update highlights Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 25 November 2021, 10:24:24 UTC |
| d4c1bbe | Wenqi Li | 25 November 2021, 08:05:14 UTC | update changelog for v0.8.0 (#3382) * update changelog for v0.8.0 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Nic Ma <nma@nvidia.com> | 25 November 2021, 08:05:14 UTC |
| 058bb40 | Wenqi Li | 25 November 2021, 02:55:50 UTC | 3366 - whats new in 0.8 (#3383) * whats new in 0.8 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * updated based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Nic Ma <nma@nvidia.com> | 25 November 2021, 02:55:50 UTC |
| a640dde | Nic Ma | 25 November 2021, 00:18:17 UTC | 3368 add `frame_dim` to TensorBoard plot utility (#3385) * [DLMED] add frame_dim Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix CI test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove doc-string of args "currently not used" Signed-off-by: Nic Ma <nma@nvidia.com> | 25 November 2021, 00:18:17 UTC |
| 8c90c59 | dongyang0122 | 24 November 2021, 17:02:43 UTC | add dints model (#3344) * add dints model Signed-off-by: dongy <dongy@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * rename scripts Signed-off-by: dongy <dongy@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * rename scripts Signed-off-by: dongy <dongy@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <dongy@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <dongy@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * Move stem out of dints * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add test dints cell, mixop and dints bug fix * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Change dints.stem * update scripts Signed-off-by: dongy <dongy@nvidia.com> * adds doc; update test_factorized_reduce.py Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update docstring of mixops Signed-off-by: Wenqi Li <wenqil@nvidia.com> * ReLU -> Acti Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update mixops cell Signed-off-by: Wenqi Li <wenqil@nvidia.com> * remove forward() Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * Add dints comments * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add device to dints and fix unit test * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixes typos Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fix docstrings Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fix docstrings Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update mixop and cell Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * Add dints comments * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Remove arch_codes in forward * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add Dints weight parameter function * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <dongy@nvidia.com> * Fix 2D Dints bugs, unit testing, and commenting * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * dints/dints_blocks updates Signed-off-by: Wenqi Li <wenqil@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update ram cost Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <dongy@nvidia.com> * [DLMED] add TorchScript Signed-off-by: Nic Ma <nma@nvidia.com> * Fix dints bug, add comments, torchscript support * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update scripts Signed-off-by: dongy <dongy@nvidia.com> * update docstrings; remoted `is_search` Signed-off-by: Wenqi Li <wenqil@nvidia.com> * torchscript dints inference Signed-off-by: Wenqi Li <wenqil@nvidia.com> * test fixes Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes gpu tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes dints cell tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * skip for previous torch versions Signed-off-by: Wenqi Li <wenqil@nvidia.com> * inplace grads Signed-off-by: Wenqi Li <wenqil@nvidia.com> * remove warning msg Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: dongy <dongy@nvidia.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Yufan He <heyufan1995@gmail.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Nic Ma <nma@nvidia.com> | 24 November 2021, 17:02:43 UTC |
| 721f6f7 | Nic Ma | 24 November 2021, 10:57:40 UTC | 3387 Fix 0.0 or None value in AsDiscrete (#3393) * [DLMED] fix None value Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit tests Signed-off-by: Nic Ma <nma@nvidia.com> | 24 November 2021, 10:57:40 UTC |
| 839f7ef | Wenqi Li | 23 November 2021, 22:33:01 UTC | fixes readme links (#3380) Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 23 November 2021, 22:33:01 UTC |
| 5f68a22 | Eric Kerfoot | 23 November 2021, 18:43:43 UTC | Adding repeats option to ThreadDataLoader (#3389) * Adding repeats option to ThreadDataLoader Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Adding repeats option to ThreadDataLoader Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * Update thread_buffer.py * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> | 23 November 2021, 18:43:43 UTC |
| 9cc339d | Nic Ma | 23 November 2021, 16:32:00 UTC | 3387 fix threshold value issue in AsDiscrete (#3388) * [DLMED] fix threshold issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> | 23 November 2021, 16:32:00 UTC |
| 0cfecbb | Behrooz | 23 November 2021, 15:47:13 UTC | Fix SplitOnGrid issue (#3386) * Refactor some variable names Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Fix SplitOnGrid issue with numpy backend Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Add unittest to cover the fixed issue Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> * Rename c_image to n_channels Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com> | 23 November 2021, 15:47:13 UTC |
| 5d87b23 | Behrooz | 23 November 2021, 13:35:03 UTC | `TileOnGrid` support for `Tensor` input (#3384) | 23 November 2021, 13:35:03 UTC |
| 5adf30b | Behrooz | 22 November 2021, 16:37:10 UTC | Numpy Implementation of SplitOnGrid (#3378) | 22 November 2021, 16:37:10 UTC |
| 37930a9 | Wenqi Li | 22 November 2021, 08:47:08 UTC | 3370 option of zip_longest to decollate (#3373) * option to zip_longest Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds a pad option Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes batch size Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 22 November 2021, 08:47:08 UTC |
| d0e72fb | Nic Ma | 20 November 2021, 05:19:26 UTC | [DLMED] add frame_dim (#3369) Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com> | 20 November 2021, 05:19:26 UTC |
| 5e54d3e | Wenqi Li | 20 November 2021, 01:38:36 UTC | Fixes typos in documentation (#3364) * fixes typos in docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes type errors Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes the docstrings Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typo Signed-off-by: Wenqi Li <wenqil@nvidia.com> | 20 November 2021, 01:38:36 UTC |
