| f58f58a | Ronny Lorenz | 01 November 2021, 10:38:42 UTC | Prepare for release v2.5.0 | 11 November 2021, 06:45:22 UTC |
| e69037d | Ronny Lorenz | 11 November 2021, 06:45:08 UTC | SWIG: Add remaining Perl 5/Python 2.x wrappers for subsequence Boltzmann sampling | 11 November 2021, 06:45:22 UTC |
| 2bd7955 | Ronny Lorenz | 11 November 2021, 05:32:46 UTC | TESTS: Make command line program checks more portable | 11 November 2021, 05:33:09 UTC |
| 1055687 | Ronny Lorenz | 11 November 2021, 05:31:17 UTC | Add C++11 requirement to the autoconf/automake build process (needed by dlib) | 11 November 2021, 05:33:09 UTC |
| 2e525e1 | Ronny Lorenz | 09 November 2021, 21:30:15 UTC | Add RNAmultifold.1.gz to installed manpages in viennarna.spec | 10 November 2021, 07:13:07 UTC |
| 6697162 | Ronny Lorenz | 10 November 2021, 06:52:19 UTC | CLEANUP: Uncrustify src/ViennaRNA/utils/utils.c | 10 November 2021, 07:13:07 UTC |
| e5b57b3 | Ronny Lorenz | 10 November 2021, 06:52:19 UTC | CLEANUP: Uncrustify src/ViennaRNA/utils/svm_utils.c | 10 November 2021, 07:13:07 UTC |
| d50285b | Ronny Lorenz | 10 November 2021, 06:52:18 UTC | CLEANUP: Uncrustify src/ViennaRNA/utils/structure_utils.c | 10 November 2021, 07:13:07 UTC |
| 0d61983 | Ronny Lorenz | 10 November 2021, 06:52:18 UTC | CLEANUP: Uncrustify src/ViennaRNA/utils/msa_utils.c | 10 November 2021, 07:13:07 UTC |
| e72f640 | Ronny Lorenz | 10 November 2021, 06:52:18 UTC | CLEANUP: Uncrustify src/ViennaRNA/utils/higher_order_functions.c | 10 November 2021, 07:13:07 UTC |
| 91b4df5 | Ronny Lorenz | 10 November 2021, 06:52:12 UTC | CLEANUP: Uncrustify src/ViennaRNA/search/BoyerMoore.c | 10 November 2021, 07:13:07 UTC |
| 2fde562 | Ronny Lorenz | 10 November 2021, 06:51:55 UTC | CLEANUP: Uncrustify src/ViennaRNA/params/convert.c | 10 November 2021, 07:13:07 UTC |
| cfb1cf7 | Ronny Lorenz | 10 November 2021, 06:51:47 UTC | CLEANUP: Uncrustify src/ViennaRNA/landscape/walk.c | 10 November 2021, 07:13:07 UTC |
| 4527780 | Ronny Lorenz | 10 November 2021, 06:51:47 UTC | CLEANUP: Uncrustify src/ViennaRNA/landscape/neighbor.c | 10 November 2021, 07:13:07 UTC |
| e335144 | Ronny Lorenz | 10 November 2021, 06:51:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/io/io_utils.c | 10 November 2021, 07:13:07 UTC |
| eabe76e | Ronny Lorenz | 10 November 2021, 06:51:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/io/file_formats_msa.c | 10 November 2021, 07:13:07 UTC |
| b277f94 | Ronny Lorenz | 10 November 2021, 06:51:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/io/file_formats.c | 10 November 2021, 07:13:07 UTC |
| dd9df79 | Ronny Lorenz | 10 November 2021, 06:51:12 UTC | CLEANUP: Uncrustify src/ViennaRNA/datastructures/lists.c | 10 November 2021, 07:13:07 UTC |
| e3d6962 | Ronny Lorenz | 10 November 2021, 06:51:12 UTC | CLEANUP: Uncrustify src/ViennaRNA/datastructures/hash_tables.c | 10 November 2021, 07:13:07 UTC |
| a74de0f | Ronny Lorenz | 10 November 2021, 06:51:12 UTC | CLEANUP: Uncrustify src/ViennaRNA/datastructures/char_stream.c | 10 November 2021, 07:13:07 UTC |
| 951b689 | Ronny Lorenz | 10 November 2021, 06:50:58 UTC | CLEANUP: Uncrustify src/ViennaRNA/constraints/soft.c | 10 November 2021, 07:13:07 UTC |
| 8bbbdae | Ronny Lorenz | 10 November 2021, 06:50:58 UTC | CLEANUP: Uncrustify src/ViennaRNA/constraints/SHAPE.c | 10 November 2021, 07:13:07 UTC |
| 82cee30 | Ronny Lorenz | 10 November 2021, 06:50:58 UTC | CLEANUP: Uncrustify src/ViennaRNA/constraints/ligand.c | 10 November 2021, 07:13:07 UTC |
| 744adaa | Ronny Lorenz | 10 November 2021, 06:50:58 UTC | CLEANUP: Uncrustify src/ViennaRNA/constraints/hard.c | 10 November 2021, 07:13:07 UTC |
| 9edb227 | Ronny Lorenz | 10 November 2021, 06:50:58 UTC | CLEANUP: Uncrustify src/ViennaRNA/constraints/constraints.c | 10 November 2021, 07:13:07 UTC |
| 81b3d39 | Ronny Lorenz | 10 November 2021, 06:50:14 UTC | CLEANUP: Uncrustify src/ViennaRNA/unstructured_domains.c | 10 November 2021, 07:13:07 UTC |
| 6c5e320 | Ronny Lorenz | 10 November 2021, 06:50:14 UTC | CLEANUP: Uncrustify src/ViennaRNA/treedist.c | 10 November 2021, 07:13:07 UTC |
| 4f44b54 | Ronny Lorenz | 10 November 2021, 06:50:14 UTC | CLEANUP: Uncrustify src/ViennaRNA/subopt.c | 10 November 2021, 07:13:07 UTC |
| aa6c99b | Ronny Lorenz | 10 November 2021, 06:50:13 UTC | CLEANUP: Uncrustify src/ViennaRNA/snoop.c | 10 November 2021, 07:13:07 UTC |
| 7df72fd | Ronny Lorenz | 10 November 2021, 06:50:12 UTC | CLEANUP: Uncrustify src/ViennaRNA/snofold.c | 10 November 2021, 07:13:07 UTC |
| 77b56d8 | Ronny Lorenz | 10 November 2021, 06:50:12 UTC | CLEANUP: Uncrustify src/ViennaRNA/sequence.c | 10 November 2021, 07:13:07 UTC |
| 9aebc31 | Ronny Lorenz | 10 November 2021, 06:48:42 UTC | CLEANUP: Uncrustify src/ViennaRNA/ProfileDist.c | 10 November 2021, 07:13:07 UTC |
| fbc1bdf | Ronny Lorenz | 10 November 2021, 06:48:42 UTC | CLEANUP: Uncrustify src/ViennaRNA/plex.c | 10 November 2021, 07:13:07 UTC |
| 76bf3ac | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/pf_multifold.c | 10 November 2021, 07:13:07 UTC |
| f7faec6 | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/pf_fold.c | 10 November 2021, 07:13:07 UTC |
| 3d12e13 | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/perturbation_fold.c | 10 November 2021, 07:13:07 UTC |
| 2ca9f4d | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/part_func_wrappers.c | 10 November 2021, 07:13:07 UTC |
| 7be6287 | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/part_func_co.c | 10 November 2021, 07:13:07 UTC |
| 637dc7d | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/move_set.c | 10 November 2021, 07:13:07 UTC |
| c2db0b3 | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/model.c | 10 November 2021, 07:13:07 UTC |
| 73c7c05 | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/mm.c | 10 November 2021, 07:13:07 UTC |
| ccc9bc4 | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/mfe_wrappers.c | 10 November 2021, 07:13:07 UTC |
| b307439 | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/mfe_window.c | 10 November 2021, 07:13:07 UTC |
| cb79661 | Ronny Lorenz | 10 November 2021, 06:48:40 UTC | CLEANUP: Uncrustify src/ViennaRNA/mfe.c | 10 November 2021, 07:13:07 UTC |
| 7c7564a | Ronny Lorenz | 10 November 2021, 06:48:39 UTC | CLEANUP: Uncrustify src/ViennaRNA/Lfold.c | 10 November 2021, 07:13:07 UTC |
| 80c7132 | Ronny Lorenz | 10 November 2021, 06:48:39 UTC | CLEANUP: Uncrustify src/ViennaRNA/inverse.c | 10 November 2021, 07:13:07 UTC |
| 219667c | Ronny Lorenz | 10 November 2021, 06:48:38 UTC | CLEANUP: Uncrustify src/ViennaRNA/grammar.c | 10 November 2021, 07:13:07 UTC |
| efc44b6 | Ronny Lorenz | 10 November 2021, 06:48:38 UTC | CLEANUP: Uncrustify src/ViennaRNA/gquad.c | 10 November 2021, 07:13:07 UTC |
| a7104e1 | Ronny Lorenz | 10 November 2021, 06:48:38 UTC | CLEANUP: Uncrustify src/ViennaRNA/fold_compound.c | 10 November 2021, 07:13:07 UTC |
| 24c952a | Ronny Lorenz | 10 November 2021, 06:48:38 UTC | CLEANUP: Uncrustify src/ViennaRNA/fold.c | 10 November 2021, 07:13:07 UTC |
| b0e541a | Ronny Lorenz | 10 November 2021, 06:48:38 UTC | CLEANUP: Uncrustify src/ViennaRNA/eval_wrappers.c | 10 November 2021, 07:13:07 UTC |
| 22d68df | Ronny Lorenz | 10 November 2021, 06:48:38 UTC | CLEANUP: Uncrustify src/ViennaRNA/eval.c | 10 November 2021, 07:13:07 UTC |
| e53659a | Ronny Lorenz | 10 November 2021, 06:48:37 UTC | CLEANUP: Uncrustify src/ViennaRNA/equilibrium_probs.c | 10 November 2021, 07:13:07 UTC |
| 63a9228 | Ronny Lorenz | 10 November 2021, 06:48:37 UTC | CLEANUP: Uncrustify src/ViennaRNA/duplex.c | 10 November 2021, 07:13:07 UTC |
| bbb24a6 | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/dist_vars.c | 10 November 2021, 07:13:07 UTC |
| e4fc3a5 | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/c_plex.c | 10 November 2021, 07:13:07 UTC |
| 5ce8575 | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/concentrations.c | 10 November 2021, 07:13:07 UTC |
| 81fc02a | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/commands.c | 10 November 2021, 07:13:07 UTC |
| 415594a | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/combinatorics.c | 10 November 2021, 07:13:07 UTC |
| abbec77 | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/centroid.c | 10 November 2021, 07:13:07 UTC |
| fd90719 | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/bs_wrappers.c | 10 November 2021, 07:13:06 UTC |
| f424931 | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/boltzmann_sampling.c | 10 November 2021, 07:13:06 UTC |
| abffd74 | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/alphabet.c | 10 November 2021, 07:13:06 UTC |
| 2007879 | Ronny Lorenz | 10 November 2021, 06:48:36 UTC | CLEANUP: Uncrustify src/ViennaRNA/ali_plex.c | 10 November 2021, 07:13:06 UTC |
| f3f461d | Ronny Lorenz | 10 November 2021, 06:48:35 UTC | CLEANUP: Uncrustify src/ViennaRNA/alipfold.c | 10 November 2021, 07:13:06 UTC |
| 79b98f5 | Ronny Lorenz | 10 November 2021, 06:48:35 UTC | CLEANUP: Uncrustify src/ViennaRNA/alifold.c | 10 November 2021, 07:13:06 UTC |
| f1a2fd8 | Ronny Lorenz | 10 November 2021, 06:48:35 UTC | CLEANUP: Uncrustify src/ViennaRNA/2Dpfold.c | 10 November 2021, 07:13:06 UTC |
| 0aa84a6 | Ronny Lorenz | 10 November 2021, 06:48:34 UTC | CLEANUP: Uncrustify src/ViennaRNA/2Dfold.c | 10 November 2021, 07:13:06 UTC |
| d9f4d22 | Ronny Lorenz | 10 November 2021, 06:28:28 UTC | CLEANUP: Uncrustify src/bin/RNAup.c | 10 November 2021, 07:13:06 UTC |
| e78e552 | Ronny Lorenz | 10 November 2021, 06:28:28 UTC | CLEANUP: Uncrustify src/bin/RNAsubopt.c | 10 November 2021, 07:13:06 UTC |
| a73cb13 | Ronny Lorenz | 10 November 2021, 06:28:28 UTC | CLEANUP: Uncrustify src/bin/RNAsnoop.c | 10 November 2021, 07:13:06 UTC |
| 9470c51 | Ronny Lorenz | 10 November 2021, 06:28:28 UTC | CLEANUP: Uncrustify src/bin/RNApvmin.c | 10 November 2021, 07:13:06 UTC |
| e31fa24 | Ronny Lorenz | 10 November 2021, 06:28:28 UTC | CLEANUP: Uncrustify src/bin/RNAplfold.c | 10 November 2021, 07:13:06 UTC |
| cb3ea5f | Ronny Lorenz | 10 November 2021, 06:28:28 UTC | CLEANUP: Uncrustify src/bin/RNAplex.c | 10 November 2021, 07:13:06 UTC |
| 811d19f | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNAPKplex.c | 10 November 2021, 07:13:06 UTC |
| 1a9a211 | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNApdist.c | 10 November 2021, 07:13:06 UTC |
| 9092a42 | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNAparconv.c | 10 November 2021, 07:13:06 UTC |
| 22ede25 | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNApaln.c | 10 November 2021, 07:13:06 UTC |
| de944bd | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNAmultifold.c | 10 November 2021, 07:13:06 UTC |
| a7203cc | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNALfold.c | 10 November 2021, 07:13:06 UTC |
| b595df1 | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNAinverse.c | 10 November 2021, 07:13:06 UTC |
| b3288f6 | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNAfold.c | 10 November 2021, 07:13:06 UTC |
| 1be0416 | Ronny Lorenz | 10 November 2021, 06:28:27 UTC | CLEANUP: Uncrustify src/bin/RNAeval.c | 10 November 2021, 07:13:06 UTC |
| f9129c0 | Ronny Lorenz | 10 November 2021, 06:28:26 UTC | CLEANUP: Uncrustify src/bin/RNAduplex.c | 10 November 2021, 07:13:06 UTC |
| 2378007 | Ronny Lorenz | 10 November 2021, 06:28:26 UTC | CLEANUP: Uncrustify src/bin/RNAdos.c | 10 November 2021, 07:13:06 UTC |
| 21fe2b7 | Ronny Lorenz | 10 November 2021, 06:28:26 UTC | CLEANUP: Uncrustify src/bin/RNAdistance.c | 10 November 2021, 07:13:06 UTC |
| 36621fc | Ronny Lorenz | 10 November 2021, 06:28:26 UTC | CLEANUP: Uncrustify src/bin/RNAcofold.c | 10 November 2021, 07:13:06 UTC |
| 137b8ad | Ronny Lorenz | 10 November 2021, 06:28:26 UTC | CLEANUP: Uncrustify src/bin/RNAaliduplex.c | 10 November 2021, 07:13:06 UTC |
| c42f165 | Ronny Lorenz | 10 November 2021, 06:28:26 UTC | CLEANUP: Uncrustify src/bin/RNA2Dfold.c | 10 November 2021, 07:13:06 UTC |
| 6fcca00 | Ronny Lorenz | 09 November 2021, 21:26:41 UTC | CLEANUP: Remove unused variables from RNAup.c | 10 November 2021, 07:13:06 UTC |
| 9efbd97 | Ronny Lorenz | 09 November 2021, 21:26:29 UTC | CLEANUP: Remove unused variables from RNAPKplex.c | 10 November 2021, 07:13:06 UTC |
| ecc7b21 | Ronny Lorenz | 09 November 2021, 21:26:14 UTC | CLEANUP: Remove unused variables from RNALfold.c | 10 November 2021, 07:13:06 UTC |
| b1079f4 | Ronny Lorenz | 09 November 2021, 21:25:59 UTC | CLEANUP: Remove unused variables from RNAheat.c | 10 November 2021, 07:13:06 UTC |
| 80adf14 | Ronny Lorenz | 09 November 2021, 21:25:45 UTC | CLEANUP: Remove unused variables from RNAmultifold.c | 10 November 2021, 07:13:06 UTC |
| bc538b6 | Ronny Lorenz | 09 November 2021, 21:25:32 UTC | CLEANUP: Remove unused variables from RNAalifold.c | 10 November 2021, 07:13:06 UTC |
| 68f890b | Ronny Lorenz | 09 November 2021, 21:25:20 UTC | CLEANUP: Remove unused variables from RNAfold.c | 10 November 2021, 07:13:06 UTC |
| 0b09a98 | Ronny Lorenz | 09 November 2021, 21:23:56 UTC | CLEANUP: Remove unused variables in wrap_dlib.cpp | 10 November 2021, 07:13:06 UTC |
| 39463a5 | Ronny Lorenz | 09 November 2021, 21:23:38 UTC | CLEANUP: Remove unused variables in subopt_zuker.c | 10 November 2021, 07:13:06 UTC |
| 2039ea5 | Ronny Lorenz | 09 November 2021, 21:23:24 UTC | CLEANUP: Remove unused variables in sequence.c | 10 November 2021, 07:13:06 UTC |
| 76154f2 | Ronny Lorenz | 09 November 2021, 21:23:07 UTC | CLEANUP: Remove unused variables in perturbation_fold.c | 10 November 2021, 07:13:06 UTC |
